Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ----------                                                                                           <------MYB83                                                                                           <------MYB46(1)                                                                                          --------->MYB59                                                                                       --------->ATHB12                                                                                       xxxxxxxxxxxxxx                                                                                      <---------YAB1                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC55(2)                                                              ----------->GT1     <---------ANAC55(1)                                                            --------->At4g35610   <---------ANAC46                                                            <---------At4g35610--------->ARR14(2)                                                            <---------ZAT2     <---------ARR14(2)                                                            --------->ZAT2     <---------MYB52(1)                                                    <---------ANAC46          <-----------HVH21                                               <---------ANAC58              --------->LBD16    <----                                               <---------ANAC58            <---------LBD16--------->MYB46(2)                      <---------ARR11(3)       <---------ANAC46    --------->GLK1(2) <---------TOE1(2)                     <---------CCA1(2)         <---------ANAC55(1) <---------ARR11(3)<---------TOE2(2)            <-----------GT1   <-----------RAV1(1)--------->ALFIN1  --------->ARR11(3)------->TEIL   tttcttcaaaagtttttctccacaaatcttatgtgttgtttgattttttacgtggagtctggagctgaaaatctttttccggttacgtatgtttggtaaa  23974600                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                <-----------GT1                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                               <---------WOX13(1)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             --------->ATHB12                                                                             <---------ICU4                                                                            <---------YAB1                                                                          --------->YAB1                                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                          <------ZmHOX2a(1)                                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <---------MYB52(1)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    <---------MYB46(3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                          --------->ZAT14----------->GT1                                                          xxxxxxxxxxxxxxx>smallRNA(si3)                                                          <---------ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                         xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                         xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        xxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ATHB12                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxx                                                        xxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxx                                                        xxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->AtLEC2                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxx                                                        xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ANAC58                                                        xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ANAC58                                                        *TSS xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx                                 ------->GAMYB          xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx                        <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxx                        --------->AHL20(2)       ---------->DOF2 --------->MYB52(1)  xxxxxxxxxxxxxxxx          --------->ARR11(3)   --------->At4g35610     xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC46 ->GT1    <---------ARR11(3)   <---------At4g35610--------->DAG2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<- xxx>smallRNA(si3)   <---------ARR11(3)     <-----------GT1xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------CBF         --------->AHL20(1)   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ttgggttacgaagttcttacgaatatataattcaactgtcgaattttaacaaaaagcgtctgtagtccaacggttaggataattgccttccaagcaatag  23974700               <------NtERF2              --------->LBD16             --------->LBD16             --------->ANAC46            <---------LBD16           xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(se3) --------->LBD16 xxxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(fl3)                                                                      >>>>>> xxxx>smallRNA(s)   --------->ANAC58                                                           >>>>>> xxxxxxxx>smallRNA(le3)                                                                       ------>NtERF2 xxxxx>smallRNA(s)  --------->RAP2.6(2)                                                       ------- xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------YAB1                                             -------- xxxxxxx>smallRNA(le3)           <---------AHL20(2)                                          -------- xxxxxxxxx>smallRNA(s)           --------->AHL20(2)                                          -------- xxxxxxxxx>smallRNA(i)       --------->AHL20(2)                                             <-------- xxxxxxxxx>smallRNA(fl3) --------->ICU4                                                     --------- xxxxx>smallRNA(fl3)--------->ANAC58                                     ------->GAMYB--------->YAB1 x>smallRNA(i)<-----------HVH21<---------YAB1                           --------->ANAC58    ------->GAMYB xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     --------->ANAC58 <-----------GT1 xxxx>smallRNA(fl3) --------->ANAC46          --------->YAB1<---------------AGL15    <---------YAB1 --------LBD16------>NtERF2  <---------AHL20(2)         --------->AHL20(2)        --------->AHL20(2)   acccgggttcgactcccggcagacgcaatatttatttttatacatctattatcaaatttttaatacatttagcaacgacatcgttttattataacccgcc  23974800                                                                   <---------SPL7                                                                  --------->DEAR3(1)                                                                 <------NtERF2                                                                 --------->RAP2.3(1)                                                                ------>NtERF2                                                               --------->ANAC46                                                              <---------ABI4(2)                                                              <-------PIF4                                                              ------->PIF4                                                              <-------PIF5                                                              <-------MYC3                                                              ------->MYC2                                                              ------->MYC3                                                              ------->PIF5                                                              <-------MYC2                                                             --------->ANAC58                                                             --------->ANAC46                                                             --------->ANAC58                       -                                                           <------------OsbHLH66                    -    <---------CCA1(2)                                     <---------ZAT14                          -- >>>E2Fc                                                  <---------ZAT18                          -- >>>E2Fd                                                  --------->ZAT14                         --- -->LBD16                                                 --------->ZAT18                         --- ->ANAC46                           --------->YAB1     <---------ANAC58                      <------- ->ANAC58                 >>>>>>>>>>GATA-1             <---------ANAC55(1)                   <------- ->ANAC58           ----------->GT1<---------YAB1      <---------ANAC58       --------->ALFIN1------- -LBD16<-----------GT1  <---------YAB1            <-----------RAV1(1)    ------>MYB46(1)     -------- >MYB46(3) --------->ATHB12        <---------ATHB12    <---------ANAC46  ------>MYB83------------>CBF   aaaatcgtatcaccgattggaagggtattatcgtctaatcataaaacgtagtatgttgcgtgcacgcgccgaaccaaatcgtgtggccacaatttctcgg  23974900         --------->ANAC46   ------->GAMYB  <------------AtMYB77  --------->MYB46(3) ------>MYB46(1)                                                                  <---------ANAC58 ------>MYB83                                                                     <---------ANAC58 -------->P   <---------ALFIN1                                                    <---------ANAC46 -------->MYB52(1)                                                               <---------LBD16 -------->MYB55(1)     ---------->ID1                             <---------RVE1(1)     <---------ANAC58 ------->AtMYB61--------->ANAC58                                  <---------CCA1(1)  <---------MYB52(1) ------->MYB46(3)  <----------DOF2                      >>>>>>>>>TBF1      <---------ANAC46 ------>MYB46(3)--------->ANAC46               <---------ANAC46  <---------ARR11(3) <------NtERF2 ------>DEAR3(2)--------->ANAC58             ------>NtERF2       <---------ARR14(2)<---------MYB46(3) --HSFB2a(2)--------->AtMYB61               <---------LBD16      --------->ARR11(3)--------->LBD16 --LBD16 <---------ALFIN1                  <---------LBD16 >>>>>>>>>TBF1  <---------At4g35610     <-- -->TOE1(1)--------->ANAC46     ------------>CBF    <---------ZAT14   <-----------RAV1(1)         --- ->HSFB2a(2)<---------ALFIN1  <----------DOF2--------->LBD16   *TSS   <---------MYB46(3)<---------ANAC58   accaaccgtctccaccacacgctttgtcttctctttcaatttgtttccggcgagtgaagaagaagaagatatttgttgctgatggcgggtacttgcactt  23975000             --------->ATHB12                       <---------AHL20(2)          ---------->ID1                        <-------TEIL        ================================================MYC_MYB        ==========================================bZIP_DOF --------->At4g35610        --------->TGA1a                        <--------P  <---------At4g35610        <---------O2                        <---------TOE2(3)    <---------GLK1(1) --------->GLK1(2)        --------->O2                        <---------TOE1(3)    --------->GLK1(1)<---------GLK1(2)       <------NtERF2                   <----------DOF2     --------->ZAT2    <---------SPL7 --------- -------HSFB2a(2)                    <---------At4g35610   <---------ZAT2  --------------->AtSPL8 ------>HSFB2a(2)              <---------MYB46(3)  <---------WOX13(1) <----------DOF2       ---------   cgataaggcctcgtctcattggctcttcttcaattgttgagctttcaaggttgattaatcgagctggagttcctttctctgtacgattctctacaagaac  23975100                               ------>MYB46(1)                               -------->P     <---------HSFC1(2)                             --------->MYB46(3)                             <---------MYB59  --------->HSFB2a(1)                             <---------MYB111(1)                             <---------MYB111(2)                        ------->GAMYB<---------TGA1a                        --------->ANAC46      <------MYB46(1)                      <---------At5g28300     --------->HSFC1(2)                     <-----------GT1 <---------O2               <---------AtMYB61     --------->TGA1a             <---------MYB46(3)------>MYB83   <------MYB83<---------ARR14(2)             --------->MYB55(2)================MYC_MYB    --------->ARR14(2)                      ---            <---------DEAR3(1)--------->MYB55(1)          ------->TEIL                      <--------            --------->ALFIN1 <---------MYB46(2)<---------ARR11(3)                       ---------->DOF2            <---------AtMYB61--------->DEAR3(1)--------->ARR11(3)                    --------->ANAC58       <---------ALFIN1 =======================MYC_MYB   <---------CCA1(2)           --------->ANAC58      <---------REM1(2)--------->MYB46(3)     <---------HSFB2a(1)                    --------->ANAC46 <---------ZAT18<---------MYB46(3)   --------->O2  ------>ZmHOX2a(1)              --------->At4g35610 >ANAC58 <---------DEAR3(1)------->TEIL      --------->MYB59                      <---------At4g35610 >ANAC58 --------->ANAC46 <---------ALFIN1 <------ZmHOX2a(1)                 <---------GLK1(2)    <--   cagagccctccacggtggtggtttaaccgcacctacctctcgtgaggaaggtccttcttgtatcttcgttggacctattgattctgctcgcaaagaaact  23975200                                                                             <---------ANAC46                                                                             --------->ALFIN1                                 --------->GLK1(2)                         <---------ANAC58                                 <---------ARR11(3)                        <---------ANAC46       <----------DOF2           --------->ARR11(3)                      <---------ZAT14    <---------ARR11(3)          --------->RVE1(1)                  <---------MYB46(3)    --------->ARR11(3)       --------->AHL20(2)                   <---------YAB1 ------>HSFB2a(2)            --------->YAB1                       <---------TOE2(3)<---------YAB1 -GLK1(2)            --------->ANAC58  <----------DOF2      ---------->ID1 <---------ANAC58 -------HSFB2a(2)    --------->ANAC58 <---------MYB52(1) <-------TEIL <---------MYB46(3)            -   ctagaagctctttatcgccaagtacgcctaataaaaatctgttttttggttcttcaaaattcgtctctatggttgtggagtgtgtattattcagaaattt  23975300                                                          --------->ARR11(3)                                                          <---------ARR14(2)            <---------AHL20(2)                            --------->ARR14(2)     <---------TOE2(2)                         <------MYB83     <---------TOE1(2)               <---------YAB1     <---------MYB46(3)         <---------AHL20(2)    ------>ZmHOX2a(1)          <----------DOF2 <------MYB46(1)                   --------->ICU4    <-   --------->TOE2(2)       <---------ANAC58   <---------AtMYB61         <----------DOF2            <- -------->GLK1(2)          <---------ANAC58  <---------WOX13(1)         <---------DAG2<---------TOE2(3)   agaatcctatgttttaaattctaaattttgcttctttttcttattggattggtctcggtggatattgagttctgctttatgaaatttttatgttataggc  23975400            <---------YAB1     --------->ANAC55(2)                                                                            -     <---------ANAC55(1)                                                                           --     <---------ANAC58                                                                              --     <---------ANAC46                                                                    ------->TEIL     <---------ANAC55(2)                                                       --------->ARR14(2)  <-     <---------ANAC58                                                          <---------ARR14(2)  --    <-------TEIL           --------->YAB1                               <---------MYB52(1)         <- <------ZmHOX2a(1)      <----------DOF2                 <---------TOE1(3)      --------->KAN4(2) ---- --------TOE2(3)    --------->ANAC58                    <---------TOE2(3)     <----------TaMYB80 ---- --------TOE1(3)    --------->ANAC58         ----------->HVH21     --------->ZAT6     <---------ANAC46   taaggatgcgtattacaatggcaagcctttgatagttgatgacatgtttgacagagttgaggtaagataacactgttagcatattcttgtgtatgtagca  23975500  Previous    Next  AGI:  At5g59395.1    Description:  pre-tRNA. tRNA-Gly (anticodon: TCC) Range:  from: 23974656    to: 23974727    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g59400.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN64889.1) Range:  from: 23974963    to: 23976933    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version