Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------ZAT2                                        <------NtERF2                                        --------->ZAT2                                   <---------ZAT6                                 --------->MYB52(2)                                    <------NtERF2                             --------->ANAC58                                         ------>NtERF2                             --------->ANAC58                                        <---------DEAR3(1)                             --------->ZAT6                                       --------->DAG2 ------>GT1                --------->MYB52(1)             <----------DOF2        ---------->DOF2  --- --->ALFIN1          <------ZmHOX2a(1)  --------->At4g35610                     ---------->DOF2   --- --bZIP60(2)       <---------TOE2(3)    <---------At4g35610             <------ZmHOX2a(1)       <----   gtaagaacaaaactagagattgaggaacataacgctagtggcagctatgtgattttagagctttggaactatgaggaaaaccgaaaggcgacgatggagg  23974300                                                                                                   --                                                              <---------ANAC58                     --                                                              <---------ANAC58                     --            --------->ICU4                             ---------->DOF2                       <-------   --------->MYB46(3)                                --------->ANAC58                        <------- ----------->RAV1(1)   <---------------AtSPL8        --------->ANAC58                        -------- --------->MYB52(1)    --------->DAG2              --------->MYB52(1)                       <-------- ------>ANAC58         --------->MYB59            --------->TOE1(2)              ---------->DOF2   -- ------>ANAC58       --------->CCA1(2)           <---------MYB52(2)          ---------->DOF2--------- --ZmHOX2a(1)       --------->ARR11(3)           --------->MYB46(3)       --------->TOE2(3) <--------   aagcaacagatgtgatgttgaagataaggtccaaacttgctgctatgaagaacaaacgaaagaggcttgaggtctaacttaaagaaagaagacaataatt  23974400    --------->ZAT6  <-----------GT1 ------->ANAC46 ------->ANAC55(2) ------->ANAC58 -ATHB1 --ICU4 ->ATHB51                --------->ZAT14 -ATHB12   --------->LBD16            <---------MYB52(1) ------->ANAC58     ---------->DOF2  --------->TOE2(3) >ICU4   <---------LBD16 <---------ZAT14    <-----------GT1                        <---------MYB59 -ATHB51--------->MYB52(1)         ---------->ID1   --------->AHL20(2) --------->REM1(1)   caagtaacaataccggagacgagaaagtgttctgtttttcgttaatttaccagtttaaattagttttgctactacaactattgtaccgaattggattttg  23974500                                                                                           <------MYB83                                                                                           ----------                                                                                           <------MYB46(1)                                                                                          --------->MYB46(2)                                                                                       --------->ATHB12                                                                                       xxxxxxxxxxxxxx                                                                                      <---------YAB1                                                                                  <---------ANAC46                                                                                  <---------ANAC55(1)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                              ----------->GT1     --------->ANAC55(2)                                                            --------->ZAT2        <---------ANAC55(2)                                                            <---------ZAT2     <---------ARR14(2)                                                            --------->At4g35610<---------MYB52(1)                                                            <---------At4g35610--------->ARR14(2)                                                    <---------ANAC46          <-----------HVH21                                               <---------ANAC55(1)           --------->LBD16    <----                                               <---------ANAC46            <---------LBD16--------->MYB59                      <---------ARR11(3)       <---------ANAC58    --------->ARR11(3)<---------TOE1(2)                     <---------CCA1(2)         <---------ANAC58    <---------ARR11(3)------->TEIL            <-----------GT1   <-----------RAV1(1)--------->ALFIN1  --------->GLK1(2) <---------TOE2(2)   tttcttcaaaagtttttctccacaaatcttatgtgttgtttgattttttacgtggagtctggagctgaaaatctttttccggttacgtatgtttggtaaa  23974600                                                                                  <---------ANAC58                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <---------ANAC58                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                <-----------GT1                                                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                               <---------WOX13(1)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             --------->ATHB12                                                                             <---------ICU4                                                                            <---------YAB1                                                                          <------ZmHOX2a(1)                                                                          --------->YAB1                                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      <---------MYB52(1)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <---------MYB46(3)                                                                    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                          xxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                          xxxxxxxxxxxxxxxx>smallRNA(le3)                                                          --------->ZAT14----------->GT1                                                          <---------ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxx                                                        xxxxxxxxxxxxxxxx>smallRNA(s)      <---------ATHB12                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  xxxxxxx                                                        *TSS xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxx                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC46                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AtLEC2                                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58                                                        xxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxx                                                        xxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxx                                 ------->GAMYB          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxx                        <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxx                        --------->AHL20(2)       ---------->DOF2 --------->MYB52(1)  xxxxxxxxxxxxxxxx          --------->ARR11(3)   <---------At4g35610     xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC58 ->GT1    <---------ARR11(3)   --------->At4g35610--------->DAG2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<- xxx>smallRNA(si3)   --------->AHL20(1)     <-----------GT1xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------CBF         <---------ARR11(3)   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ttgggttacgaagttcttacgaatatataattcaactgtcgaattttaacaaaaagcgtctgtagtccaacggttaggataattgccttccaagcaatag  23974700               <------NtERF2              ------>NtERF2             --------->LBD16             --------->ANAC46            <---------LBD16           xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(se3) --------->LBD16 xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(s)                                                                         >>>>>> xxxxxxx>smallRNA(le3)                                                                         >>>>>> xxxxxxxxx>smallRNA(i)            <---------YAB1                                              ------- xxxxx>smallRNA(s)  --------->ANAC58                                                          ------>NtERF2 xxxxx>smallRNA(fl3)--------->ANAC46                                                         -------- x>smallRNA(i)--------->LBD16    <---------AHL20(2)                                          -------- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          -------- xxxxxxxx>smallRNA(le3)          --------->AHL20(2)                                         ------->GAMYB xxxxxxxxx>smallRNA(le3)     <---------AHL20(2)                                             <-------- xxxx>smallRNA(s)   --------->RAP2.6(2)                                  ------->GAMYB--------->YAB1 xxxxxxxxxx>smallRNA(fl3)    --------->AHL20(2)                         --------->ANAC58    --------- xxxxxxxxx>smallRNA(fl3) --------->ICU4                                 --------->ANAC58 <-----------GT1 xxxx>smallRNA(fl3) --------->ANAC58                    --------->AHL20(2)           <---------YAB1 --------LBD16<-----------HVH21<---------YAB1 --------->YAB1<---------------AGL15 --------->AHL20(2)   acccgggttcgactcccggcagacgcaatatttatttttatacatctattatcaaatttttaatacatttagcaacgacatcgttttattataacccgcc  23974800                                                                   <---------SPL7                                                                  --------->DEAR3(1)                                                                 --------->RAP2.3(1)                                                                 <------NtERF2                                                                ------>NtERF2                                                               --------->ANAC46                                                              <-------PIF5                                                              <-------MYC3                                                              ------->MYC3                                                              <-------MYC2                                                              ------->PIF5                                                              <-------PIF4                                                              <---------ABI4(2)                                                              ------->PIF4                                                              ------->MYC2                                                             --------->ANAC46                                                             --------->ANAC58                                                             --------->ANAC58                       -                                                           <------------OsbHLH66                    -    <---------CCA1(2)                                     <---------ZAT14                          -- >>>E2Fc                                                  --------->ZAT18                          -- >>>E2Fd                                                  --------->ZAT14                         --- -->LBD16                                                 <---------ZAT18                         --- ->ANAC46                           --------->YAB1     <---------ANAC58                      <------- ->ANAC58                 >>>>>>>>>>GATA-1             <---------ANAC58                      -------- ->ANAC58           ----------->GT1<---------YAB1      <---------ANAC55(1)    --------->ALFIN1------- -LBD16<-----------GT1  <---------YAB1            <-----------RAV1(1)    ------>MYB46(1)     <------- >MYB46(3) --------->ATHB12        <---------ATHB12    <---------ANAC46  ------>MYB83------------>CBF   aaaatcgtatcaccgattggaagggtattatcgtctaatcataaaacgtagtatgttgcgtgcacgcgccgaaccaaatcgtgtggccacaatttctcgg  23974900         --------->ANAC46   ------->GAMYB  --------->MYB46(3)  <------------AtMYB77 ------>MYB83                                                                     <---------ANAC58 -------->P   <---------ALFIN1                                                    <---------ANAC58 ------>MYB46(1)                                                                  <---------ANAC46 -------->MYB55(1)                                                               <---------LBD16 -------->MYB52(1)     ---------->ID1                             <---------RVE1(1)     <---------ANAC58 ------->AtMYB61--------->ANAC46                                  <---------CCA1(1)  <---------MYB52(1) ------->MYB46(3)  <----------DOF2                      >>>>>>>>>TBF1      <---------ANAC46 ------>DEAR3(2)--------->ANAC58               <---------ANAC46  --------->ARR11(3) <------NtERF2 ------>MYB46(3)--------->ANAC58             --------->LBD16     <---------ARR11(3)--------->LBD16 --LBD16 <---------ALFIN1                   <---------LBD16      <---------ARR14(2)<---------MYB46(3) ->HSFB2a(2)--------->AtMYB61              <---------LBD16     *TSS   <---------MYB46(3)<---------ANAC58 -->TOE1(1)--------->ANAC46     ------------>CBF    <---------ZAT14   <-----------RAV1(1)         --- --HSFB2a(2)<---------ALFIN1  <----------DOF2------>NtERF2 >>>>>>>>>TBF1  <---------At4g35610     <--   accaaccgtctccaccacacgctttgtcttctctttcaatttgtttccggcgagtgaagaagaagaagatatttgttgctgatggcgggtacttgcactt  23975000             --------->ATHB12                       <---------AHL20(2)          ---------->ID1                        <-------TEIL        <---------O2                           <--------P  --------->ZAT2        --------->TGA1a                     <---------TOE1(3)                <---------SPL7        ==========================================bZIP_DOF <---------ZAT2  --------------->AtSPL8        --------->O2                        <---------TOE2(3)    <---------GLK1(1)        ================================================MYC_MYB  --------->GLK1(1)          ---------       <------NtERF2                   <----------DOF2     --------->At4g35610     --------->GLK1(2) ------>HSFB2a(2)                    <---------At4g35610   <---------At4g35610    <---------GLK1(2) -------HSFB2a(2)              <---------MYB46(3)  <---------WOX13(1) <----------DOF2       ---------   cgataaggcctcgtctcattggctcttcttcaattgttgagctttcaaggttgattaatcgagctggagttcctttctctgtacgattctctacaagaac  23975100                               ------>MYB83                               -------->P     --------->HSFB2a(1)                             --------->DEAR3(1)                             <---------MYB111(1)                             --------->MYB46(3)<---------ARR11(3)                             <---------MYB46(2)--------->ARR11(3)                        --------->ANAC46      --------->HSFC1(2)                        =======================MYC_MYB                      <---------At5g28300     <---------HSFB2a(1)                     <-----------GT1 <---------TGA1a               <---------AtMYB61     --------->O2             <---------MYB46(3)------>MYB46(1)<------MYB46(1)             --------->MYB55(2)================MYC_MYB                                            ---            <---------AtMYB61<---------MYB111(2)          <---------ARR14(2)                <--------            <---------DEAR3(1)--------->MYB55(1)          --------->ARR14(2)            ---------->DOF2            --------->ALFIN1 <---------MYB59  <------MYB83------->TEIL               --------->ANAC58       <---------ALFIN1 ------->GAMYB<---------O2  ------>ZmHOX2a(1)                 --------->ANAC46      <---------REM1(2)--------->MYB46(3)     <---------HSFC1(2)                     --------->ANAC58 <---------ZAT18<---------MYB46(3)   --------->TGA1a     <---------CCA1(2)        <---------At4g35610 >ANAC58 <---------DEAR3(1)------->TEIL      --------->MYB59                      --------->At4g35610 >ANAC58 --------->ANAC46 <---------ALFIN1 <------ZmHOX2a(1)                 <---------GLK1(2)    <--   cagagccctccacggtggtggtttaaccgcacctacctctcgtgaggaaggtccttcttgtatcttcgttggacctattgattctgctcgcaaagaaact  23975200  Previous    Next  AGI:  At5g59390.1    Description:  XH/XS domain-containing protein. similar to XH/XS domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69191.1); contains InterPro domain Region of unknown function XH (InterPro:IPR005379); contains InterPro domain Region of unknown function XS (InterPro:IPR005380) Range:  from: 23972160    to: 23974377    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g59395.1    Description:  pre-tRNA. tRNA-Gly (anticodon: TCC) Range:  from: 23974656    to: 23974727    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g59400.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN64889.1) Range:  from: 23974963    to: 23976933    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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