Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <-----------GT1                                        <---------AHL20(1)                                        --------->AHL20(1)                                        <---------AHL20(2)                                       --------->AHL20(2)                                     <------                                       --------->YAB1                                        --------                                      <---------YAB1                         ---------->DOF2 <-------                                    -------->ATHB1                        <---------------AGL15                                    <---------ICU4              --------->AHL20(2)          <--------                                    <--------HAHB4              <---------AHL20(2)  --------->GLK1(2)                                   --------->ICU4              <---------AHL20(1)  --------->ARR11(3)                                   <---------ATHB51            --------->AHL20(2)  <---------ARR11(3)                                   <---------ATHB12            <---------AHL20(2)  <---------GLK1(2)                      <----------ID1--------->YAB1             --------->AHL20(1) <---------RVE1(1) -------ALFIN1      --------->ANAC46--------->ATHB51     --------->TOE2(3)--------------->AGL15   ccactcccaatgtactatatataagcgactaatttcaattattatattttctattttaaacttaatttatttgttactcaaaagagattttgtgatggtt  23969100    --------->YAB1             --------->LBD16  --------->ANAC58               --------->YAB1 -GAMYB                       --------->ANAC55(2)                 <---------------AtSPL8 --->GT1                      <---------ANAC55(2)              --------->ARR11(3)       <---------AHL20(2) --MYB46(3)          ---------->DOF2            --------->ANAC58 ------>ZmHOX2a(2)      --------->AHL20(2) -YAB1        <---------AHL20(1)         --------->ANAC46 --------->ICU4 --------->ANAC46    <-------TEIL   aaacaattgtgactaatatacttcaaagacatccgtatcaaacacaaaacaagctccataatgttgatctagtacaaacaattgtgacatataaatgcat  23969200                                                                   ----------->RAV1(1)                              <-------GAMYB                     --------->ANAC46                             ----------->GT1        <---------ANAC55(2)      --------->TOE2(3)                 --------->TOE2(3)        <---------AtMYB61  --------->YAB1 ----------->GT1    <-----               <---------ARR11(3)      ------->TEIL<---------ICU4 --------->ANAC46     <---------WOX13(1)   attgtcgaaactcactaaatcttagattactcggttaaatggatgtggtctaataagtgtcaataaacacaacacaaaatgttaaactgatggattagtg  23969300                                                          ---------->DOF2                                                       <------MYB83                                                       <------MYB46(1)                                                    <-------GAMYB                                     ------->MYC3  --------->MYB55(2)                             <--                             --------->YAB1        <---------MYB46(3)                 <-------GAMYB<-                          ----------->GT1      <---------YAB1  ---------->DOF2       <---------MYB46(3)            --------->AHL20(2)       <-------MYC3  --------->MYB111(2)         <XXXXXXXXXXXXXXXXXXXXMIR827 ----ZAT6   <---------AHL20(2)  <---------AHL20(2) --------->MYB52(2)  --------->MYB52(1)         ---   atgagaagatgagtttaaatgtttcatttagtaataaaacgtgtttattatgtttgttggtaaagaaaagaagaaacgaattgttgatggttaactaaat  23969400                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                              -------                                                                                            <--------                                                                                           --------->At5g28300                                                                    --------->GLK1(2)     -----------                                                                    <---------ARR14(2)   <------NtERF2                                                           ----------->HVH21            ------>NtERF2                                                        --------->TOE1(2)              --------->DEAR3(1)                                                       <---------HSFC1(2)              <---------DEAR3(1)                                    ----------->GT1    --------->HSFC1(2)           ------>ZmHOX2a(2)                                    --------->YAB1     <---------ZAT2              <------ZmHOX2a(2)                            ------>MYB46(1)            <---------HSFB2a(1)        --------->ARR11(3)                            ------>MYB83               --------->At4g35610        <---------ARR11(3)               ------>ZmHOX2a(2)  --------->ARR14(2)   <---------At4g35610        <---------ARR14(2)      <---------YAB1        --------->MYB52(1)         --------->ZAT2        <---------HSFB2a(2) <--- -------AHL20(2)          <---------MYB59             --------->GLK1(2)      --------->HSFB2a(2) ---- --------AHL20(2)         ------->GAMYB      --------->LBD16  <---------ANAC46    --------->ARR14(2) ------>AHL20(2)       <-----------GT1     ----------------->AGL2   --------->ARR14(2) *TSS<-------GAMYB   tttaatttcttattcgatctcggtttaaccgaaccgaatcgtaaacccagaaacagaagctgcgacggagaatccatttctcgagatcgtcgccgttaaa  23969500                                                                  --------->GLK1(1)                                                                  <---------GLK1(1)                                                             <---------ATERF1(1)                                                             --------->LBD16                                                             ------>NtERF2                                                            <---------DEAR3(1)                                                            --------->ATERF1(2)                                                           --------->ATERF1(1)       <---------YAB1                                      <---------ANAC58      ------>ZmHOX2a(2)                                    <---------ORA47(1) ------->TOE2(2)                                           <---------ANAC58 ------->TOE1(2)                                           <---------ANAC46                   ------- ------ARR11(3)                                       <-----------RAV1(1)                    -------- ----->ARR11(3)                                    --------->GLK1(2)                        <-------- ----->ARR14(2)                                   <---------ARR14(2)          <------ZmHOX2a(2) -->AHL20(2)                                      <---------GLK1(2)          <---------ARR14(2) -MYB52(1)                                       <---------At4g35610         --------->ARR14(2)  ---- >GT1<------ZmHOX2a(2)                       <-----------HVH21<------NtERF2--------->LBD16 ------>NtERF2 ------ARR14(2)         <----------ID1     <---------TOE1(2)<---------ATERF1(2) <---------ALFIN1----- ----->GLK1(2) --------->ATHB12  --------->TOE2(3)--------->ARR14(2)<-----------GT1       --------->DEAR3(1)   atctgcgatctcattgctcattggtgaagacaaatccctaattcgtatgtcagattctgtggccggcgatttccctcccgatccacttctcgcctccgga  23969600                       <---------ARR14(2)                    <---------bZIP60(1)                    --------->ANAC55(2)                    --------->ANAC58                    --------->bZIP60(1)                    --------->ANAC58                 ----------->TGA1                 ----------->HVH21                <-----------HVH21               <---------At4g35610               --------->LBD16               --------->At4g35610               <---------ATERF1(1)               <---------DEAR3(2)                                                               -----              --------->DEAR3(1)                                                                -----              <---------DEAR3(1)                                                                -----            ------>NtERF2                                        <---------ARR14(2)            ------           --------->ANAC46                               <---------LBD16                    <-------    <---------At4g35610--------->ARR14(2)          ----------------->AGL1                   <--------  --------->REM1(1) <---------ANAC55(2)            <-----------------AGL1                   <-------- -->LBD16<---------ATERF1(1)                    --------->DEAR3(1)     <---------GLK1(2)   <--------- ->HSFB2a(2)--------->LBD16                     --------->MYB46(3)  --------->YAB1         <--------- -LBD16  ------>ZmHOX2a(1)                  --------->DEAR3(2)   --------->ARR14(2)--------->HSFB2a(2) -->NtERF2 --------->DEAR3(1)         <---------ZAT6     <-----------RAV1(2)       <---------HSFB2a(2) ---->ARR14(2)--------->ATERF1(2) <---------ZAT14------>NtERF2  <------ZmHOX2a(1) <---------LBD16  --   gccttcatctcctccgccggtgacggaaccctagacagtagtgcgaaacgacgaccgattcagggaggaatcggaatttctggttcgggagagagcgtac  23969700                                                                    --------->ATERF1(1)                                                                    <------NtERF2                                                                    ----------->RAV1(2)                                                                   <---------ATERF1(1)                                                                   <---------RAP2.3(1)                                                                  <---------DEAR3(1)                                                                  --------->RAP2.3(2)                                                                  --------->RAP2.3(3)                                                                 --------->RAP2.3(1)                                                                 --------->ORA47(2)                                                                 --------->DEAR4(2)                                                                 --------->RRTF1(1)                                                                 ------>NtERF2                                                                 --------->ATERF1(1)                                                                 <------NtERF2                                                                <---------ORA47(2)                                                                <---------ATERF1(1)                                                                <---------RAP2.3(1)                                                                <---------RRTF1(1)                                                                <---------DEAR4(2)                         ----------->GT1                       <---------DEAR3(1)        ----------->RAV1(2)                         <---------At4g35610                   <---------RAP2.3(3)      ------>NtERF2 <---------LBD16         --------->At4g35610                   <---------RAP2.3(2)    <---------ANAC58 ---->ANAC58           <-----------RAV1(2)                    --------->SPL7          <---------ANAC58 ---->ANAC46       --------->ICU4                             <---------ABI4(1)   <---------ANAC58 ---->ANAC58   --------->ZAT18                               --------->ALFIN1     <---------ANAC58 --->SPL7     ------->GAMYB                           --------->LBD16          <---------WOX13(1) --SPL7      --------->ANAC58                        <---------ANAC46        --------->ATHB12   <---- -ANAC58    --------->RAP2.6(3)        --------->ANAC58    <---------ANAC46 <---------YAB1      <---- -ANAC58   <---------DOF5.7(2)         --------->ANAC46    <---------ANAC58 --------->ICU4 ------>ZmHOX2a(1) ------AtSPL8--------->ANAC58          --------->ANAC58    <---------ANAC58<---------ARR11(3) <------ ------AtSPL3--------->ANAC46     --------->At4g35610<------NtERF2--------->DEAR3(1) <---------ATERF1(1) ----->TEIL--------->MYB52(1)   --------->YAB1      <---------LBD16------>NtERF2 <---------MYB46(3)   gcatcgggatggctaacggcactgatcaggtgaatcatcagacggaatcgaagtcgcggaagcgtgcggcgcctggagataattggttgcctcctggttg  23969800                                  <---------At4g35610                                  --------->At4g35610                              ----------->RAV1(1)                              ================RAV                         <---------At4g35610 <---------MYB46(3)                         --------->LBD16  <------MYB83                       <---------LBD16    <---------ANAC46                      --------->MYB52(1) --------->MYB52(2)                    --------->HSFB2a(1)  <---------DEAR3(1)      <---------ZAT2                    <---------HSFB2a(1)  --------->MYB55(2)      --------->ZAT2               <-------TEIL  <------NtERF2<------MYB46(1)        --------->At4g35610              --------->ARR14(1)  <---------ZAT2          <---------GLK1(2)              --------->CCA1(2)   ----------->RAV1(2) ---------->DOF2                               <             <---------GLK1(2)<---------ALFIN1    --------->DAG2 <---------At4g35610             <---             <---------ARR14(2)   --------->ZAT2  <---------TOE1(3)               <---------------AGL15             --------->ARR11(1) <---------ALFIN1  <---------TOE2(3)               --------------->AGL15 --MYB46(1)  --------->ARR14(2) <-----------RAV1(2)----------->GT1   <---------WRKY18(1)         ---- --MYB83   ----------->ARR10------>NtERF2<---------MYB46(3)--------->GLK1(2) <----------DOF2     ---- --P     --------->CCA1(2) --------->PCF2--------->MYB46(2)<-----------ARR10 <---------DAG2      <---   gagagttgaagataagattcgaacttccggtgccacagctggttcggtggataaggtaaagaatctcagcttgactctgcttttctctatgaagttttga  23969900         <---------ANAC46                    <---------MYB52(1)         <---------ANAC58                  <-----------RAV1(1)         <---------ANAC58              <---------WOX13(1)    <---------MYB46(3)               --------->ATHB12                             <---------TOE2(3)  <-------GAMYB                     <---------YAB1                               ---------->DOF2 <---------ANAC46                 <----------DOF2                     --------->GLK1(2) -------TEIL                  --------->ARR14(2)                      <---------ARR11(3) ------ZAT2                   <---------GLK1(2)                       --------->ARR11(3)----------->HVH21 ----->At4g35610              <---------ARR14(2)                      <-----------ARR10 <---------ZAT6 ----->ZAT2    --------->ZAT6<------ZmHOX2a(1)       ---------->ID1  --------->RVE1(1)----------->GT1 ------At4g35610           <---------TOE2(3)<-------GAMYB <----------DOF2     <----------DOF2       -   gctgcgttgttgcttgaagactacaaattgaggattctttgattgctgttgttttgttctctttggtttaaaaatcttgcctttaaagtagtgacaagtg  23970000  Previous    Next  AGI:  At5g59370.1    Description:  ACT4 (ACTIN 4). Identical to Actin-4 (ACT4) [Arabidopsis Thaliana] (GB:P53494); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT12 (ACTIN-12), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G46520.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to Actin (GB:Q05214); similar to hypothetical protein [Vitis vinifera] (GB:CAN83697.1); similar to Actin-58 (GB:P30167); contains InterPro domain Actin/actin-like; (InterPro:IPR004000); contains InterPro domain Actin, conserved site; Range:  from: 23966965    to: 23969063    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g59380.1    Description:  MBD6 (methyl-CpG-binding domain 6); DNA binding. similar to MBD5 (methyl-CpG-binding domain 5), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46580.1); similar to unknown [Populus trichocarpa] (GB:ABK93437.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Methyl-CpG DNA binding; (InterPro:IPR001739) Range:  from: 23969487    to: 23970933    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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