Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----      <----------DOF2                                                                          ------     --------->TOE2(3)                                                                        -------     --------------->AGL15              --------->YAB1                                        -------     <---------------AGL15             --------->ICU4                           --------->ANAC58-----  <---------CCA1(2)               --------->ANAC55(2)                           --------->ANAC58----- ------ZAT2           ---------->DOF2  <---------YAB1                 ---------->DOF2       ---------   gctcatacctttataagagataaccaaagttagtttatgtgatcatcaattttgcttcaaccagaagttatacaaagttatcaagcatgtagaaacaacc  23920600   ---------->DOF2  <---------AHL20(2)  --------->AHL20(2)      <-------TEIL -->GAMYB              --------->ATHB12 --->MYB46(3)         <---------YAB1 -->ANAC58            --------->ICU4 -->ANAC58      --------->ANAC58                                                ---------->DOF2 ---->YAB1 --------->ANAC58                                                  --------->AHL20(2) ---->TOE2(3)   --------->ANAC58                                          ----------->GT1 >MYB46(3) --------->ANAC58     <---------YAB1    <---------YAB1  <-----------RAV1(2)    <----------DOF2   aaaattaaagaacaagacaagctcatgattcattttgattccaatctactctatgattcaatatttaagcaggggaagattaaaaagcttactttcgctt  23920700                               <---------ANAC55(2)                               --------->ANAC55(2)                               --------->bZIP60(2)                               --------->TGA1a                               <---------TGA1a                               --------->ANAC58                   --------->MYB46(3)                  -------->P   <---------O2                  ----------------------->TaNAC69(2)                                     <---------ICU4                  =======================MYC_MYB                                        <---------YAB1               <---------ANAC58--------->ANAC58                                    --------->ANAC58               <---------ANAC58--------->O2                                        --------->ANAC46    <---------ALFIN1 >>>>>>>>>>>>>>>>>LFY                                   --------->GLK1(2) -------  ------>ZmHOX2a(1)<-----------------AGL1                      --------->AtLEC2    --------->ANAC58<-   cttcctccacattttttgcttaccaccagtggcacgtctcttgtgaattgaatcacgagagatacctgcaaaacagagaatcaacaagtcatcaatacac  23920800                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)   --------->ANAC58     --------                                             <----------DOF2          --------->MYB52(1)     <-------                  --------->ETT(2)        --------->ARR11(3)         --------->ARR11(1)     ---------        >>>>>>>>>TBF1                     <---------ARR11(3)     ---------->DOF2            <-------- -->ANAC46       --------->HSFB2a(2)     <---------CCA1(2)--------->TOE1(2)            ------->TEIL - --------YAB1    <---------HSFB2a(2)----------->GT1   --------->GLK1(1) --------->ANAC58    <--------   cactattgaagaagaatttctcgacattgatgctagaaaggttatatctttgccagaaatcgaacgagaaagaaacggaattgaaaatgtacccatgatt  23920900                                                                                        <---------ZAT18                                                                                ----------->TBP                                                                              <---------------AGL15 ->ATHB12                                                  *TSS    --------->ALFIN1     --------->ZAT14 --ICU4                                                <---------ANAC58       --------------->AGL15 >ICU4                                                 <---------ANAC58      ----------------->AGL3 -YAB1                                                 <---------ANAC46      ======================== --------->DOF2   <----------DOF2  <----------DOF2    <---------LBD16      --------->ANAC58 -ATHB12  XXXXXXXXXXXXXXXXXXXX>MIR773B  <---------TOE2(3)<------NtERF2     --------->ANAC58    ------   tcaaaagcgtttgattcaagcttttggttctcacgagctttagaggtttaacaaatggcggaagagtaagtggtgtctcgctataaatagtttactctgc  23921000                                                           --------->AtMYB61                                                           ------->GAMYB                               ------------>CBF           --------->MYB46(3)                       <-                              <-----------GT1  <----------DOF2                                     <-                        ------------>CBF      <---------ANAC58  --------->TOE2(3)             -------                       --------->TOE2(3)      <---------ANAC58<-----------------AGL3        ---------               --------->TOE1(3)           ------>ZmHOX2a(1) <---------ALFIN1               --------- ===============================================================================MADS_MADS  --------->YAB1 >NtERF2       --------->TOE2(3)    --------->YAB1   --------->ANAC46        --------->GLK1(2)-------   caaacacaaacaaaaaaccctaaaacgtcaatttacaatcgtgtccttgctttaaacacaaccacacattaatggaaagaatcgattttttaaaaataat  23921100                                                                                         <---------At4g35610                                                          --------->TGA1a            <----------DOF2                                                          --------->O2              <---------ANAC58                                                          <---------O2              <---------ANAC58                                                          ======================================bZIP_DOF                                                       ==============================HOX2a_HOX2a                                                       ==========================HOX2a_HOX2a             <---------HSFB2a(2)                       =========================HOX2a_HOX2a          --------->ARR11(3)                       <---------ARR14(2)          --------->YAB1  <------ZmHOX2a(1)                                --------->ARR14(2)          <---------ICU4 ----------RAV1(2)                          <---------ANAC58                  <------ZmHOX2a(2) --------LBD16    *TSS   --------->CCA1(2)  <---------ANAC58              ------>ZmHOX2a(2) -->YAB1 <---------GLK1(2)                 <---------LBD16<---------TGA1a<------ZmHOX2a(2) >AHL20(1)<---------ARR11(3)   <----------ID1      --------->GLK1(2)    --------->ARR14(2) >AHL20(2)--------->GLK1(2)--------->CCA1(2)<---------LBD16   ---------->ID1  <---------ATHB12      < -->AHL20(2) --------->HSFB2a(2)   --------->AtMYB61   ------>ZmHOX2a(1)<---------ARR14(2)          -   atcaggagtcaaaatctcgaagatgagagataagcgaccaaaattagcgggagaatcctcacttgtctcactccgatccgatcatggctttcgctgtctc  23921200                           ---------->DOF2                        ----------->GT1                             <---------At4g35610                        <-------GAMYB                        <---------TOE1(2)                       ----------->GT1                    --------->TOE2(1)                  --------->YAB1                          --------->TOE1(1) -------TEIL     <---------ATHB12          --------->HSFB2a(2) <----------DOF2            ----------- -------->ZAT14--------->WOX13(1)    <---------ALFIN1    ------>ZmHOX2a(1)             ------>NtERF2   ggttcagtcacatttcgcaatcagagcgttaaaacgagaccacttcaagaacccttctcctcgtactttctgctcgtgttttaaatcgaggcctgactcg  23921300                          <---------ANAC58                      <---------ANAC58                  --------->ANAC58                  <---------HSFB2a(1)                  --------->ANAC58                  --------->HSFB2a(1)                 --------------->AtSPL8                                             --------->ANAC58                 --------------->AtSPL3                                             --------->ANAC58   --------->TOE1(3)  <---------ANAC58   --------->LBD16                    --------->LBD16   --------->TOE2(3) ------->TEIL ----------------->AGL1     <-------TEIL  <-----------RAV1(2) >HVH21    ---------->DOF2<---------ANAC58                  --------->CCA1(2)     ---------->DOF2   tcttaccttagtttaaaggaacgtacttgcttcgtttccaaaccgggtttagtcactactagatacagacatatattccaggtgaaaagcaattttctct  23921400                                                                       ----------->HVH21                                                                   <---------At4g35610                                                                   --------->At4g35610          -----                                                             <-----------HVH21             ------>NtERF2                                                            <------MYB83  <---------O2     ----------                                                           <---------AtMYB61              --------->RAP2.3(3)                                            <---------ARR14(2)     --------->ZAT2         --------->DEAR3(1)                                            --------->ARR14(2)     <---------ZAT2         -----------                                          --------->LBD16  --------->MYB46(2)             <---------ETT(1)                                        <-----------------AG<------MYB46(1)               --------->DREB2C(2)                                        <---------LBD16    --------->MYB59<---------TGA1a --------->At1g77200                                        <-----------------AGL2   <------NtERF2            --------->DEAR4(1)                                        <-----------------AGL1 <---------DEAR3(1)        --------->RAP2.3(1)            --------->HSFB2a(2)        <-----------GT1     --------->MYB111(1)        --------->ZAT18            <---------HSFB2a(2) <---------YAB1     <-------TEIL--------->ETT(1)    <---------HSFB2a(1)  <---------YAB1 --------->AHL20(2)   <-----------GT1    <---------MYB52(1)     <------ZmHOX2a(1)----   gattttgatttcttctaaaaaaaattcaaaagttttgatttttccggttttggttcatggttaggtcggagctgagacgggaggagagttcgccgacagt  23921500  Previous    Next  AGI:  At5g59240.1    Description:  40S ribosomal protein S8 (RPS8B). Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (japonica cultivar-group)] (GB:BAA07207.1); similar to Os02g0489400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046866.1); contains InterPro domain Ribosomal protein S8e; (InterPro:IPR001047) Range:  from: 23919691    to: 23920959    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59250.1    Description:  sugar transporter family protein. Identical to D-xylose-proton symporter-like 3 [Arabidopsis Thaliana] (GB:Q0WWW9;GB:Q9FIF2); similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT5G17010.1); similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT5G17010.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN83894.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21605.1); similar to putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae] (GB:ABB17074.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Major facil Range:  from: 23921118    to: 23924203    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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