Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <------NtERF2 ----->NtERF2 ------->RRTF1(3) ------->RAP2.3(3) --------ATERF1(2) ------->ATERF1(2) ------->RAP2.3(2) ------->ANAC46 ------->DREB2C(2) ------->RAP2.6(2) ------->DEAR3(1) ------->RRTF1(2) ------>ERF1 ------>ORA47(2)            ------>ZmHOX2a(2) ------>RRTF1(1)            ================================HOX2a_HOX2a ------>ATERF1(1)     <---------At4g35610 ------>RAP2.3(1)     ----------->RAV1(2) ------>DEAR4(2)     --------->LBD16 ----NtERF2          ------>NtERF2 ------ATERF1(1)   <---------LBD16 -->NtERF2        =================HOX2a_HOX2a           --------->ALFIN1 ------RAP2.3(1)  ------>ZmHOX2a(1)                    <---------ANAC58 ---->DEAR3(1)<---------ARR14(2)                       <---------ANAC58 -----DEAR3(1)<---------ARR11(3)                       <---------ANAC46 --->ATERF1(1)--------->ARR11(3)                       <---------bZIP60(2) -----HVH21   --------->ARR14(2)                     <------ZmHOX2a(1) ---ATERF1(1)--------->CCA1(1)                 ------>MYB83 ->ANAC46    --------->RVE1(1)  --------->YAB1 ------>MYB46(1)                  ----------->GT1   gccgccatataagaaatatcctccggctgatccatagtaactcaaaaccaaacaaggacgtgtttgtctataagtatatgtctagttaaaaaactgttct  23900200                                         <---------YAB1       <-----------GT1               <----------DOF2  <----------DOF2       ---------->DOF2                               -       <---------MYB52(1)   <---------YAB1           --------->AHL20(2)                    <------ZmHOX2a(1) <----------DOF2   <----------DOF2    <---------MYB52(1)   <---------KAN4(2)     ----------->GT1    -   gttctttctgttatgttctttctttttcttatgactttctgttatgatgcatcaaataaagaataaactgttctgttttgaatttgttaaataggagagt  23900300                                     <---------AHL20(2)                                    --------->ARR11(3)                                    <---------ARR11(3)                                    --------->AHL20(1)                                    <---------AHL20(1)                                    <---------AHL20(2)                                    --------->AHL20(2)            --------->AHL20(2)                               --------->AHL20(1)        ----------->GT1                               <---------AHL20(2)       --------->DAG2                               --------->AHL20(2)   --------->ANAC58                           --------->AHL20(2)       --------->ANAC58        <---------------AtSPL8 --------->At4g35610      --------->AHL20(2)        <---------ANAC55(2)  <---------ARR11(3) -------->ANAC58          <---------AHL20(2)    ------------------------>ANAC81 -------->ANAC58    --------->YAB1 --------->AHL20(2)  ---------->DOF2   --------->ARR11(3)   gcaagctcaagaacaagctgtttcataaataaataaaatatattttctaaaatcaagtaaagtaaaaaaaaaatagatattgtactaaatgaataaactt  23900400                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                <---------WRKY38(1)                                                                                <---------WRKY12                                                                               --------->WRKY18(1)                                                                              <-----------HVH21                                                <---------ANAC58      --------->ANAC55(1)                         <---------ICU4         <---------ANAC58      --------->ANAC58                        <---------YAB1 --------->AHL20(1)             --------->ANAC58                      --------->YAB1   --------->AHL20(2)             --------->ANAC46                   ----------->GT1     <---------AHL20(2)             <---------ANAC55(2)               ------->TEIL           --------->AHL20(2)          <---------AHL20(2)           <---------------AtSPL8 --------->AHL20(2)             --------->AHL20(2)     ---------->DOF2 <---------YAB1   <---------AHL20(2)<----------ID1--------->ANAC55(2)   gattcaacaaagttttgtacgttgttataatttcacttaaataatttagtgcgtcaaaaaaacaaaattaaaacgtaattggtcaaggaaaaaaaaacaa  23900500                                                                              ----------->HVH21                                                                            <---------At4g35610                                                                          <---------RAP2.3(2)                                                                          <---------ATERF1(2)                                                                          --------->ATERF1(2)                                                                          <---------RAP2.3(3)                                                                         --------->RAP2.6(3)                                                                        --------->MYB52(1)                                                                       ----------->HVH21                                                                      ------>ZmHOX2a(2)                                        --------->ANAC58             <------ZmHOX2a(2)                                   --------->AHL20(2)                <---------At4g35610                                   <---------AHL20(2)                --------->CCA1(2)                                  <---------AHL20(2)                --------->ARR14(2)                                  --------->AHL20(2)                --------->AGP1           <-------                                  --------->AHL20(1)                <---------AGP1   --------->ZAT14                           ----------->GT1                          --------->ARR11(3)      ---------          ------------------------>ANAC81              <-------TEIL <---------ARR11(3)     <---------YAB1         --------->DAG2   ----------->GT1  --------->WOX13(1)       <---------ARR14(2)    -------->P        ---------->DOF2 ---------->DOF2 --------->ANAC58     <----------DOF2--------->At4g35610       ------------------------>ANAC81  --------->ANAC46     <---------DAG2------>NtERF2--------->MYB46(3)   gtctcaagggaaaaggaaaacaaaaaaaaaggaaaatttaataagcaatctggaccgttcatactttttagatctgacggctgacagagaactaccattg  23900600                                                                                  <-----------RAV1(2)      --------->YAB1                                                              <---------HSFB2a(2)   <----------DOF2                         *TSS                                   --------->HSFB2a(2) -----CBF                        --------->LBD16 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             - >ATHB12                       <---------LBD16 --------->YAB1              ---------->DOF2<------NtERF2   ggcatcttttataaacagagagatttgtttgattccggtcgaactcaaaacataatttgctctcaataagacattaacaaagtcccagaggcagagagag  23900700                                                                                                    <                                                        <-------GAMYB     <---------AtMYB61       ---                                                        <---------At4g35610         --------->TOE2(3)                                                        --------->At4g35610         --------->TOE1(3)                                                    --------->AtLEC2    <----------DOF2           ---                           <-----------GT1  <---------At4g35610     <---------CCA1(2)  ---------->DOF2 -------->GLK1(2)    <---------ARR11(3)     --------->At4g35610  ------>ZmHOX2a(1)  <---------MYB59 <   agaatcagagagagagaagtcgagatgtttttccacatagtattggagcggaacatgcagttgcatcctcgtttctttggtcgtaacctaaaagaaaacc  23900800            <---------YAB1       <---------At4g35610 --------->ARR14(2) <-----------ARR10 <---------ARR11(1) <---------ARR14(2) ------->TEIL ---------->DOF2 ---------ARR14(1)                 <---------TOE1(2)                  <-----------GT1 ------>TOE2(1)                ------->PIF5                --------->HSFB2a(2)        <----------DOF2 ------>TOE1(1)                <-------PIF5             --------------->AGL15  <---------ANAC46 ---------CCA1(2) --------->ARR11(3)       <----------DOF2 <---------HSFB2a(2)<---------LBD16   tcgtatctaagctcatgaaagatgtcgaaggcacttgcaggttttctttctctattcacttctagtagaaaatcaccaatttcggatgctttaatcgcaa  23900900                                  ------>ZmHOX2a(1)                                 --------->TOE2(3)                                 --------->TOE1(3)                                                  <       ------>ZmHOX2a(1) <-------TEIL                                   --------->TOE2(3)           <      --------->TOE2(3)<---------ARR14(2)                      <---------AHL20(2)                  -- <----------DOF2       <---------GLK1(2)           --------->DAG2 --------------->AtSPL8         <--- <---------DAG2        --------->ARR14(2)         ---------->DOF2<-----------GT1                 <<<<   acccttttcctcaattctcaattcggattcgttttccttaagacaacttcgaaaaagttgcatattttttcgaaccctaatctccgtctagttcaatttg  23901000                                                                          <---------ANAC46                                       ------>ZmHOX2a(2)                  <---------ANAC58                                      <------ZmHOX2a(2)                   <---------ANAC58                                     --------->ARR11(3)               --------->At4g35610 ------MYB83           --------->AHL20(2)                             <---------At4g35610 ------MYB46(1)        <---------AHL20(2)                             <---------ZAT2 ------->MYB59        --------->AHL20(2)    <----------DOF2           --------->ZAT2 ------MYB52(1)   ----------->GT1    <---------ARR11(3)              <-----------RAV1(1)          <-- <<<<<MYB98       --------->ZAT18---------->DOF2<-----------GT1<----------DOF2     ---------->DOF2---   ttaggttttagggattagagtggattaaattcgaataaagatcgttcttttaactaaattgtagtctttctctgctgcttgtgactaaagtctgattttt  23901100  Previous    Next  AGI:  At5g59170.1    Description:  proline-rich family protein. contains InterPro domain Glutelin; (InterPro:IPR000480) Range:  from: 23899214    to: 23900348    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g59180.1    Description:  DNA-directed RNA polymerase II. Identical to DNA-directed RNA polymerase II subunit RPB7 (RPB19) [Arabidopsis Thaliana] (GB:P38421); similar to RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14660.1); similar to DNA-directed RNA polymerase II subunit RPB7 (RNA polymerase II subunit B7) (GB:P46279); contains InterPro domain RNA polymerase Rpb7, N-terminal; (InterPro:IPR005576); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 23900643    to: 23902434    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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