Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                                                                      <---------ARR11(3)                                                                                      <---------ARR14(2)                                                                                  --------->ANAC46                                                                                 <---------LBD16                                                                                <---------ALFIN1                                                                              --------->SPL7                      <---------AHL20(2)                                   --------->ANAC55(2)                    <---------AHL20(2)                                     <---------ANAC58                  <---------AHL20(2)                                    --------->GLK1(2)                  --------->AHL20(2)                                    --------->ARR14(2)                --------->AHL20(2)                                      <---------ARR14(2) --------->GT1  <---------AHL20(2)                                   <---------TOE2(3)--------->ARR14(2) ------>DAG2  --------->AHL20(2)                              <---------YAB1<---------SPL7      ----- -------------AtSPL8--------->AHL20(2) ----------->GT1      <---------ICU4 <---------ANAC55(2)  ----- ------>DOF2  <---------AHL20(2)    <---------ANAC46        --------->YAB1 <---------ANAC58    ------   aaagtacaatcgatatatatatatatatatgaaaaattaagtggaaattcaatgtagtagaatcatgagttaagaatccgtaccacgggatctaacaatg  23835600         <---------ALFIN1        --------->MYB46(3)        <---------MYB111(1)        --------->DEAR3(1)        <---------MYB111(2)        <---------MYB55(2)       --------->ANAC58       --------->ANAC58      --------->PCF2  --------->DAG2         <---------ARR11(3) ---------->DOF2         --------->ARR11(3)                                    ---------->ID1      -- ---->TOE2(3)           --------->RVE1(1)                        --------->ANAC58            -------- ---->YAB1------>MYB83  --------->CCA1(1)                        ----------->GT1            --------- ----->GT1------>MYB46(1)--------->ARR14(2)<----------ID1        --------->ANAC58       ---------->DOF2   ttaaaaagcacccaccttgttttgaaatatcttccaaacttgagggagacaaaaaaaaaaaaaaaacaagtaaaaacatttgtcttaaaaaaaagaagaa  23835700                        --------->AHL20(2)                    --------->AHL20(2)                    <---------AHL20(2)                 --------->YAB1                <---------YAB1                            ---------->DOF2                --------->ICU4                  <----------DOF2            <---------ARR11(3)             --------->At4g35610            --------->ARR11(3)             <---------HSFC1(2)      >>>>>>>>>TBF1--------->AHL20(2)      --------->HSFC1(2)--------->HSFC1(2) -------->DOF2--------->YAB1<---------------AtSPL8<----------DOF2           <----------DOF2 --->GT1  ----------->GT1  ---------->DOF2 <---------At4g35610        <----------DOF2               - --------------->ANAC81--------->AHL20(2) --------->GLK1(2)  <---------HSFC1(2)    ----------->RAV1(1)   aaaaagaagaagaagataataataaataaaaaagaacagaacagaagctgctcttttgtccaaagcttcttcctttctctttctccaacatttcttctct  23835800                                 <-----------GT1                           --------->AHL20(2)                                     <----------DOF2                          XXXXXXXXXXXXXXXXXXXXX>MIR864-3P                   <---------AHL20(2)                       <---------AHL20(2)                                  <---------AHL20(2)                       --------->AHL20(2)              <----------DOF2     --------->AHL20(2)                    --------->AHL20(2)    <----------ID1               <---------AHL20(2) ----------->GT1   --------->AHL20(2)   --------->REM1(2)     ---------->ID1<---------YAB1 ---------->GT1  --------->YAB1<---------ATHB12        <---------DAG2 <---------AHL20(2)       <-----   gcaagttaaaaacttactaaaataaaaaattcaataaacccttgaagacaaaattagcttttttgttttttttttattttaattcttttttggttatttt  23835900                                                    --------->ARR14(2)            ----------->GT1                                                  <---------MYB46(3)            *TSS   --------->AHL20(2)                                        ----------->HVH21 <----------DOF2   ---------->DOF2     --------->ARR11(3)              --------->ATHB12   ------>ZmHOX2a(1) --------->ANAC58   <---------YAB1        --------->TOE1(1)     <---------MYB52(1)         --------->ANAC58 ----AHL20(2)           ------>ZmHOX2a(1)      <----------DOF2 <----------DOF2  ---------->DOF2   <--   tttttatgattttgttttttgttttcctcgtaaaacccatgagtgacccctttggttcctctttgctttaatcttcaagaaagaaagaaaaaaatgcctt  23836000                                               --------->ATERF1(1)                                              --------->ABI4(1)                                              <---------ATERF1(1)                                              ------>NtERF2                                             --------->ANAC46                                             --------->RAP2.3(2)                                             ------------------>SPL14                                             --------->RAP2.3(3)                                             --------->RRTF1(3)                                             --------->DEAR3(1)                                             <---------DEAR3(1)                                            --------->ERF1                                            --------->ATERF1(1)            ------>ZmHOX2a(2)               --------->RAP2.3(1)            =============================HOX2a_HOX2a           <---------GLK1(1)                --------->DEAR4(2)          --------->ARR11(3)               <---------ATERF1(1)          <---------ARR11(3)              --------->ANAC46                            ------>NtERF2          <---------AGP1               <---------GLK1(2)--------->LBD16              ----------->HVH21         <---------CCA1(2)        ------>ZmHOX2a(1)--------->SPL7                  ------>ZmHOX2a(1)    <----------DOF2           <---------ARR14(2) <---------SPL7              <---------ATERF1(1)   <---------ANAC58           --------->GLK1(2)--------->RAP2.3(1)         --------->At5g28300   <---   <---------ANAC58           --------->ARR14(2)--------->DEAR3(1)       <---------DEAR3(1)   ------- --------DOF2                <---------ARR14(1)<------NtERF2          ----------->HVH21      <-------   cttttgcttttggatctcatcaccatttggcgaatcctacagactcgccgccgtactccgtcgaaattagcatcgacggtgactcctccgactgggattc  23836100                                      <---------ANAC46                                      --------->DEAR3(1)                                     <------NtERF2                                     <---------LBD16                                     --------->ATERF1(1)                                    <---------RAP2.3(1)                                    <---------ATERF1(1)                                    ------>NtERF2                                    <---------RRTF1(1)                                    <---------ERF1                                    <---------RAP2.6(1)                                   <---------DEAR3(1)                                  --------->ERF1                                  --------->RAP2.6(1)                                  --------->ATERF1(1)                                  --------->RRTF1(1)                                 <---------RAP2.3(1)                                 <---------ATERF1(1)                                <---------ATERF1(2)                                --------->ATERF1(2)                               --------->DEAR3(2)                               <---------LBD16                              ------->TEIL                            --------->ZAT14                            <---------SPL7                            <---------ZAT14                           --------->ALFIN1                          <------NtERF2                        <---------DEAR3(1)         <-------TEIL                      --------->LBD16--------->RAP2.3(1)     <---------MYB46(3)                     >                     <---------DEAR3(1)--------->LBD16       ----------->GT1                    <----    <-----------RAV1(2)<---------ABI4(1)        --------->At4g35610                    ---------->DOF2 -------DOF2         <---------RAP2.6(2)<------NtERF2      <---------MYB52(1)       <------ZmHOX2a(1) -->GLK1(2)         <---------LBD16--------->DEAR3(1)     --------->LBD16        <------ZmHOX2a(1)--- --GLK1(2)          --------->SPL7--------->RAP2.3(1)   <---------LBD16 <------ZmHOX2a(1)    <------ZmHOX2a(1)   tttgtctcaggtcgatttagagtccggcggtgtaccggcgccggagaaacagctacattccggtggtaagaagaggagaactaggaggagaaagaggagg  23836200                                            --------->At4g35610                                            <---------At4g35610                                        <-----------HVH21                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                    --------->ARR14(2)            >>>>>>>>>TBF1           <---------AGP1         >>>>>>>>>TBF1              <---------ARR11(3)      >>>>>>>>>TBF1                 --------->ARR11(3)               --------->At4g35610   >>>>>>>>>TBF1    --------->ALFIN1--------->GLK1(2)                <---------At4g35610 >>>>>>>>TBF1    --------->DAG2     <---------ARR14(2)         ---------->DOF2                    <-- --ZmHOX2a(1)  ---------->DOF2     <------ZmHOX2a(1)        --------->MYB52(1)             >>>>>>>>>TBF1 --------------------->ANAC81    <---------TOE1(2)<----------DOF2   --------->GLK1(2)   >>>>>>>>>TBF1   aagaagaagaagaagaagaaaggtggaagagattgcaggatctgtcatcttcctttagagactaacaaagaagctgaagatgaagatgaagaagaagaag  23836300                                                                      <---------ANAC58          <---------YAB1                     >>>>>>>>>TBF1         <---------YAB1          --------->ICU4                  >>>>>>>>>TBF1  >>>>>>>>>TBF1<---------ANAC58        --------->YAB1                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <--------P       <---------YAB1                  >>>>>>>>>TBF1  >>>>>>>>>TBF1<---------TOE2(3)  <------MYB46(1)       --------->ICU4                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <------MYB83     <---------At4g35610            >>>>>>>>>TBF1  >>>>>>>>>TBF1   <---------TOE1(3) <---------TOE2(3)    <---------YAB1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <----------DOF2       --- -------YAB1                     >>>>>>>>>TBF1  >>>>>>>>>TBF1   <---------YAB1       --------->MYB59-   atgattctgatgatgatgaagatgaagaagatgaagaagaagaagaagaagaagaagaagaagaatattatggtttgcctttgcaattaggttgctcttg  23836400                               --------->At4g35610            --------->ALFIN1   <---------At4g35610            <-----------RAV1(1)<---------ZAT2          <---------ANAC58    --------->ALFIN1          <---------ANAC58   <---------ZAT14        ---------->DOF2          <---------ANAC46   --------->ZAT18      <------ZmHOX2a(2)                       ---------->ID1 ------->DOF2<-------GAMYB   --------->ZAT14     <---------ARR11(3)                  <----------DOF2 -------->DAG2   <---------ANAC46                --------->ARR11(3)            --------->ZAT6   taaaggtgatttgggtgttgctcatagtaagtgtgctgagacttggtttaagatcaaaggaaacatgtaagtttctcttcaagactacttttgttttttt  23836500  Previous    Next  AGI:  At5g59000.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to unknown [Populus trichocarpa] (GB:ABK94615.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (InterPro:IPR011016) Range:  from: 23835980    to: 23837463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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