Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ----------->HVH21                               <---------AtLEC2                  --------->ANAC58                               <---------ICU4                    --------->ANAC46              <-----                          <---------ARR14(2)                     --------->ANAC58              ------                          --------->ARR14(2)            --------->ARR14(2)                     ------                      --------->ANAC46  <------ZmHOX2a(2)     <---------ARR14(2)             --------          --------->GLK1(2)<------ZmHOX2a(2)            --------->AGP1                      ---------  --------->AtLEC2   ------->GAMYB<---------WRKY18(1)   <---------ARR14(2)                 <---------LBD16 ------->MYC3       --------->MYB46(3) <---------ARR14(2)     --------->ARR14(2)   <-----------GT1 <-------MYC3<----------DOF2--------->YAB1          <---------LBD16            <---------MYB52(1) ---ZmHOX2a(2)      <---------ALFIN1   --------->ARR14(2)<------ZmHOX2a(2)   <-----------RAV1(1)-----   tcacatgcagagactcttttcaacacccgatcagcatgaccgatcccatcgattcccagatcgaaatacgcctcgaaaactgttgtttccttctccggag  23742300                        <---------ARR11(1)                        --------->ARR14(2)                        <---------ARR14(2)                        ------->TEIL                       <---------CCA1(2)               ----------->HVH21             <------MYB83             <---------ANAC58                                  ----------->HVH21    ------>ZmHOX2a(2)--------->TOE1(1)                        <------ZmHOX2a(1)   <------ZmHOX2a(2) --------->TOE2(1)                       --------->At4g35610 ----ARR14(2)<------MYB46(1)                          ------>MYB46(1) --->ARR14(2)<---------ANAC58              <----------DOF2   <---------At4g35610 --->PCF2   --------->MYB55(2)          ------>ZmHOX2a(1)  <-----------RAV1(2) ->LBD16    <---------MYB46(3)        <-----------------AGL1<---------TOE1(2)                  ------ >ANAC46   --------->ALFIN1      <---------ANAC58     ------>MYB83          --------->GLK1(2)<------- ->NtERF2--------->ALFIN1        <---------ANAC58   <---------MYB59    <------ZmHOX2a(1)   --------->CCA1(2)   ccacgatcggagagtgggtgacctcgtatctgaagtcgtgtcctactttggagaccaaatcgcaggagacagaggaagaatctaagacattagatatgaa  23742400            ------>NtERF2           --------->DEAR3(1)         ------>NtERF2         --------->ABI4(1)         <---------ATERF1(1)        --------->DEAR3(1)        --------->RAP2.3(2)        --------->ATERF1(2)        <---------DEAR3(1)        --------->RRTF1(2)        --------->RAP2.3(3)        --------->RRTF1(3)        <---------ATERF1(2)       --------->RRTF1(1)       <------NtERF2       --------->DEAR4(2)       --------->ATERF1(1)       --------->RAP2.6(1)       --------->RAP2.3(1)       <---------ABI4(2)       --------->DEAR3(2)       --------->ORA47(2)      <---------RAP2.3(1)      <---------ERF1      --------->ABI4(2)      <---------ATERF1(1)      <---------DEAR4(2)      <---------RAP2.6(1)      ------>NtERF2      <---------ORA47(2)      <---------RRTF1(1)     --------->RAP2.3(2)     <---------DEAR3(1)     --------->DEAR3(1)     <---------RAP2.3(2)    --------->RAP2.6(1)    --------->RRTF1(1)    --------->ERF1    --------->ATERF1(1)    --------->RAP2.3(1)    --------->ORA47(2)    --------->DEAR4(2)    <------NtERF2    <---------ABI4(2)   <---------ATERF1(1)   <---------RAP2.6(1)   <---------RRTF1(1)   <---------ORA47(2)   ------>NtERF2   <---------RAP2.3(1)                                        --------->YAB1                  -------   <---------ERF1                                             --------->ATHB51                -------   <---------DEAR4(2)                                         <---------ICU4                  <------  <---------RRTF1(2)                                          <--------ATHB1                 <-------  <---------RAP2.6(2)             ------>ZmHOX2a(2)           --------->AHL20(2)       <-------GAMYB  <---------DEAR3(1)             <------ZmHOX2a(2)           <---------ATHB12          ==============  <---------RAP2.3(2)           --------->ARR14(2)           <---------ATHB51         <---------MYB46(3)  <---------RAP2.3(3)           <---------ARR14(2)   <---------O2                   <------NtERF2   <  <---------RRTF1(3)        <---------LBD16          <---------ANAC58               ------>NtERF2   <  --------->ALFIN1    --------->ZAT2                 <---------bZIP60(2)           --------->LBD16  - <---------ABI4(1)    <---------At4g35610            <---------ANAC46             <---------DEAR3(1)< --------->ATERF1(1)  <---------ZAT2 <---------MYB52(1)      --------->ICU4      <---------LBD16    - ---->DOF2<------NtERF2   ----------->HVH21          <---------ANAC58      --------->YAB1    -------- --YAB1--------->ERF1 --------->At4g35610          <-----------HVH21  <---------------------WRI1 ----   agaggcggcgccgccgagagtttcagctacgacggatccgttttggattaaaacgtcgtggcaataatttccgacgatgagaacgcggcgattgggaatc  23742500                                                                   <---------ARR11(3)                                                         --------->At4g35610                                                         <------MYB83                                                        --------->MYB55(2)                                                        <---------MYB46(3)                                                        --------->ALFIN1                                                        <-----------RAV1(1)                                                       <---------MYB55(1)                                                       <---------ANAC46     <---------ANAC46                                 <---------ZAT2    ------>NtERF2                                     --------->ZAT2    <------NtERF2                                     <---------At4g35610  <---------DEAR3(1)                                <---------RAP2.6(2) ------>NtERF2                                    ------>ZmHOX2a(2)--------->ARR14(2) -->ARR14(2)                                   <---------ICU4      <---------ARR14(2) -->GLK1(2)                        <---------ARR14(2) ----------->RAV1(2)        ---------->DOF2 ---ARR14(2)                       --------->ARR14(2) <------NtERF2--------->ARR11(3) --GLK1(1)                        <------ZmHOX2a(1)<---------LBD16<------ZmHOX2a(1) =========MYC_MYB              ==========================HOX2a_HOX2a     <---------HSFB2a(2) ---------bZIP60(2)            <------ZmHOX2a(1)  =======================HOX2a_HOX2a<---------At4g35610 ---------TGA1a           <---------ANAC46    <---------YAB1   <---------At4g35610  --------->At4g35610 -------->TGA1a        ----------->HVH21      --------->ICU4--------->ZAT14  --------->DAG2 ---------O2       <---------At4g35610    <-----------TGA1 <XXXXXXXXXXXXXXXXXXXXMIR162A/B -------->O2       --------->At4g35610   --------->bZIP60(2)<---------ZAT14 ---------->DOF2 ->GLK1(1)        --------->MYB52(2)     --------->ANAC46<------MYB46(1) --------->HSFB2a(2)      >>> ------->HVH21  <---------MYB52(1)=======================HOX2a_HOX2a<------ZmHOX2a(2)          >>>>>>   cgacgcggcgagtgagacgtttgctgcgacggaggaggattcaacgtcatgatcgcggctggtgcagaggatcatcgagaaagtgaagcagaaggaagaa  23742600                                   ------>MYB83                                   ------>MYB46(1)                                  --------->MYB52(1)                                           ------                                 --------->AtMYB61                                            <------                                --------->MYB46(3)                                         *TSS------                              --------->ORA47(1)                                   --------->MYB52(1)                              ------>NtERF2                                     --------->ANAC55(1)    --------->ATHB12         --------->DEAR3(1)                                 --------->ANAC55(2)    --------->YAB1           --------->RAP2.6(2)                                <---------ANAC55(2)  --------->GLK1(2)         --------->DEAR3(2)      <----------ID1              --------->ANAC46 <--- >>>>>>TBF1             ---------->DOF2    >>>>>>>>>TBF1                        --------->ANAC58 <--- >>>TBF1   --------->ICU4  --------->At4g35610>>>>>>>>>TBF1   --------->MYB52(1)--------->ANAC58<----   gaagaatcatggaattagtaagacgaagaagccgaccaacgagaagaagaagaagagacaaaactaatggctataagctaatacgtaacgtcttgagatt  23742700     <---------ZAT2                                      <-----------GT1     --------->ZAT14                        <---------ANAC58     --------->ZAT2                         <---------ANAC46  <---------ANAC58                       ----------->HVH21  <---------ANAC58                     <---------At4g35610 --->ARR14(1)                 <---------ANAC46    <------NtERF2                                     < ---GLK1(2)                 <-----------HVH21    ------>NtERF2                               <------- --->GLK1(2)               <-----------RAV1(1)  --------->ANAC58                      --------->AHL20(1) ------ANAC58              --------->ALFIN1 <---------ANAC58    <----------DOF2       <---------AHL20(2) ------ANAC58      --------->YAB1      --------->At4g35610   ------>ZmHOX2a(1)        --------->AHL20(2) ---TEIL          <---------YAB1<---------ANAC46--------->ANAC58<---------DAG2  ------->GAMYB--------   cgttccctgctctctgtcttatgatatatgtgtcgcgagggagatgacgcgcgcctaattttcctcctttttttttttgtaaccgaaataaaatgatgtt  23742800                     <---------ICU4                    <---------YAB1                   <---------ARR11(3)                   --------->ARR11(3)              --------->GLK1(2)    --------->AHL20(1)    <---------AHL20(2)    <---------AHL20(1)              <---------AHL20(1)           <---------ALFIN1                  <-    --------->AHL20(2)      <-----------GT1      <---------GLK1(1)                              ----- --------->YAB1  <---------YAB1     <---------AHL20(2)         ------>ZmHOX2a(1)              ------- ---------AHL20(2)--------->YAB1    --------->AHL20(1)        --------->ANAC46       <----------DOF2 --YAB1       <---------ARR14(2)    --------->AHL20(2)------>ZmHOX2a(1)           <---------ARR11(3) --->GT1      --------->ARR14(2)   --------->AHL20(2)--------->TOE2(3)     --------->ANAC46  --------   aaataataaaatagagaatatgatcatttttctccaattttattttgttcgaattccttattctcctccacttatccaagacaatttctttttgaaaaag  23742900                                  --------->At4g35610                                  --------->ATERF1(1)                                  <---------At4g35610                                 <---------ATERF1(1)                                 <---------RAP2.3(1)                                 ------>NtERF2                                 <---------MYB46(3)                                 <---------ERF1                                 <---------DEAR3(2)                                <---------RAP2.3(3)                                <---------RAP2.3(2)                                <---------RAP2.6(2)                                <---------RRTF1(3)                                <---------DEAR3(1)                              <---------ATERF1(1)                             --------->ANAC46                             <---------DEAR3(1)                             --------->ANAC58                             --------->ANAC58                            --------->SPL7                                <------NtERF2                          <---------ZAT14                                --------->HSFB2a(2)                          <---------SPL7                                 <---------HSFB2a(2)                          --------->ZAT18    <----------DOF2            <---------LBD16                   <-------TEIL--------->RAP2.6(3)                      --------->ETT(1)                  --------->ARR14(1)     --------->ZAT14                <---------ANAC46                  --------->CCA1(2)      <---------ZAT14           <-------GAMYB ----------HVH21 <---------ARR14(2)      <---------ZAT18          <-----------RAV1(1) ---->At4g35610  <---------GLK1(2)<------NtERF2                --------->GLK1(2)    <------ZmHOX2a(1) -->DAG2         --------->ARR11(1)    <---------At4g35610    <---------ARR14(2)   <----------ID1   - -->DOF2         --------->ARR14(2)    --------->At4g35610    <---------GLK1(2) ---------->DOF2     -   ctgtcacataccaaaacaagattcgaagcgcacggcggctcagtggacttttagtagatgctccgattctgttgtcgggaagaaaaggacaactaaacag  23743000                             --------------->AGL15                            <---------ANAC55(1)                       --------------->AGL15                       <---------------AGL15                      ----------------->AGL1            --------->AHL20(2)            <---------AHL20(2)                   <-----------RAV1(2)  ---------->DOF2  <---------WOX13(1)          <-----------HVH21 -------->ANAC58 --------->ATHB12  --------->HSFB2a(2)                                             <- -------->ANAC58<---------YAB1     <---------HSFB2a(2)----------->GT1                       ---------   agacgaaagacgatttatatgattgccattacgagttatagaaacagagagtcagggggtttatttatgagacatgagacattttgtttaagtcatggtg  23743100                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                       <---------AHL20(2)            <---------At4g35610             --------->ICU4                            --------->AHL20(2)           ------->TEIL-----             <---------YAB1       ----------->RAV1(1) <---------AHL20(2)          ---------->DOF2           --------->YAB1        <----------ID1    --------->AHL20(2)       ------>NtERF2  <---------TOE1(2) ---------DOF2              --------->YAB1        <---------YAB1           --------->DEAR3(1)<------- >ICU4  ----------->GT1    <---------YAB1 --------->ALFIN1             <---------ARR14(2)<---------ANAC46   acttttgagtttgttataatggacatactattatagcaacaagagtgggactattatttatttagtcagaacgaataccgcccatgaagctccttggatc  23743200  Previous    Next  AGI:  At5g58730.1    Description:  pfkB-type carbohydrate kinase family protein. similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21458.1); contains InterPro domain Carbohydrate/purine kinase (InterPro:IPR011611) Range:  from: 23740630    to: 23742691    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g58740.1    Description:  nuclear movement family protein. similar to nuclear movement family protein [Arabidopsis thaliana] (TAIR:AT4G27890.1); similar to Os01g0668000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043813.1); similar to hypothetical protein OsI_003155 [Oryza sativa (indica cultivar-group)] (GB:EAY75308.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain CS (InterPro:IPR007052) Range:  from: 23743000    to: 23744840    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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