Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------REM1(1)       --------->AHL20(1)                                                                <-----------       --------->AHL20(2)                                ---------->DOF2                 ------------       <---------AHL20(2)                               <------ZmHOX2a(1)               <------------       <---------AHL20(1)      --------->AHL20(2)     --------->LBD16                   <------------ ----------->GT1  --------->YAB1        --------->HSFB2a(2)                             --------->TOE2(3) --------->YAB1  <---------ATHB12       <---------HSFB2a(2)                  <-----------HVH21 ------>YAB1 <---------YAB1    --------->AHL20(1)    <---------LBD16    --------->AHL20(2) -----GT1 <---------YAB1       <---------AHL20(2)    <-----------RAV1(2)<---------AHL20(2)   taatagtaaaatattatcaatgatgtagcaaaataaaatgtactggaagactggcccaggaaagttgacagtatttaaatgtcatcgaattcttaatatg  23734600                                               --------->MYB46(3)          <---------YAB1                --------->AHL20(2)            -------->P                   <---------TOE2(3)      <-------MYC3                           <-----------GT1              <---------AHL20(2)      ------->MYC3                           --------->MYB52(1)           --------->AHL20(2)      ------->MYC2                         <---------MYB46(2)       --------->TOE2(3)      <-------MYC2                         <---------MYB52(2)    <-----------GT1     <---------ANAC58                    <-----------GT1      <---------ANAC55(2)     <---------ANAC58--------->YAB1     --------->AHL20(2)    --------->ANAC55(2)--------->At4g35610 ----AGL15      <---------AHL20(2)      <---------AHL20(2)   --------->MYB59     --------->ZAT2 --->AGL15     <---------AHL20(2)  <---------TOE2(3)    --------->DAG2    --------->YAB1           -- -----AGL2     --------->YAB1    --------->AHL20(2)    ---------->DOF2  --------->AHL20(2)       ---- -----AGL3     --------->AHL20(2)<---------AHL20(2) --------->YAB1  --------->YAB1          ---------   gatggaaacgtgcttaattaaaatgatactgacaattaatatttaactaaccacttataaagttaagtaaccatattaatattagctggaacaagagtaa  23734700                                                                   <------ZmHOX2a(2)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                            --------->GLK1(1)                                                            <---------GLK1(1)                                                          <---------ANAC58                     <-----      <---------ANAC58                               <----------DOF2                          <------ --------->HVH21                               <---------ICU4--------->ARR14(2)               <------ ------->GT1      <---------TOE2(3)   <---------TOE2(3)   <---------ANAC58                 <---------MYB52(1) >YAB1<---------ANAC58      <----------DOF2--------->AHL20(2)<---------ARR14(2)         -------------   tgtgacatgcttatggtattgatgttgagtctttttgactaagaattaaaaatgacttttgggtatccgatccagccatgagccatttcttccattaggg  23734800                        <---------ICU4                                                       --------                       <---------YAB1                                                        --------                      <-----------GT1                                                       <--------   ------>MYB83      --------->YAB1                                                     --------->MYB46(3)   -------->P       <---------YAB1                                                    --------->ANAC46   ------>MYB46(1)<--------HAHB4                                                      ------>MYB46(1) ----ZAT6         --------->YAB1             ---------->DOF2                          ------>MYB83 ---TOE2(3)      <---------YAB1           --------->YAB1                            --------->AtMYB61 ---TOE1(3)    --------------->AGL15<-----------GT1                                 <---------MYB59 ---->AGL1    <---------YAB1 --------->TOE2(3)      --------->YAB1--------->ICU4   --------->MYB46(3)   ttaccaactctgaattactattattatcatttcttaattaacaacaataaagaatcatagaattcacaaagattaatgggctgtaaccaaaccactcatt  23734900                                                              --------->LBD16                                                          <---------DEAR3(1)                                                        <---------O2              ===================                                                        <---------TGA1a           <---------TGA1a                                                        --------->ZAT2            =================bZIP_DOF                         <---------TCP16(1)             --------->O2<---------AHL20(2)    <---------AtMYB61                         ------>NtERF2                  <---------At4g35610       <---------bZIP60(2)                         --------->PCF2                 <---------ZAT2<------------CBF  <----------DOF2                     ------>ZmHOX2a(2)                  --------->At4g35610       ===================                     <---------LBD16        --------->ANAC55(1)<------NtERF2      --------->TGA1a                    <------ZmHOX2a(2)       --------->ANAC58 <---------ANAC46     <---------O2                   <---------ARR14(2)       --------->ANAC58<------NtERF2         <---------ANAC58                   --------->ARR14(2)    <---------ZAT18===========================================bZIP_DOF                  ================================================MYC_MYB         <---------ANAC58                  ------->GAMYB          --------->ZAT14--------->TGA1a           --------->O2                 --------->MYB46(3) <------------CBF  <-----------RAV1(2)         <---------ANAC46            <---------HSFB2a(2)   <---------YAB1   --------->ANAC46 --------->AHL20(2) <---------ANAC58      <---------TOE2(3)--------->LBD16   <---------REM1(2)--------->ALFIN1   <------------CBF ->ATHB12   --------->HSFB2a(2)  ------------>CBF  --------->ANAC58<---------AHL20(2)  <---------ANAC58 ->YAB1  --------->ARR14(2)     --------->YAB1     --------->ANAC58--------->AHL20(2)  <---------ANAC46 -ATHB12 <---------ARR14(2)------------>CBF --------->ANAC46<---------LBD16--------->ARR11(3)      --   agcccattacggttctacaacgatccgggcccaattacaattgtacacgctacaagccaggtggcggaatttaattggatattgacgtggctttggtgag  23735000                                                                               <---------At4g35610                                                                              <---------bZIP60(2)                                                                           ----------->HVH21             ----------->GT1                                      <---------ANAC58       <---------ZAT18                                            <---------ANAC58       <---------ETT(2)                                <----------ID1--------->At4g35610       <----------ARF1                                 <----------ARF1 <---------ZAT14 --------->MYB52(1)                                    ----------->HVH21   ----------->TGA1 *TSS --------->ALFIN1 --------->DAG2                 --------->SPL7 <---------ZAT2 ================================bZIP_DOF            --------->ALFIN1<---------At4g35610 =========bZIP_DOF    ---------->DOF2      <----------DOF2        <---------ANAC46<---------At4g35610 -------->DOF2----------->GT1   --------->ALFIN1  <---------DEAR3(1) --------->ZAT2 <----------DOF2 <   aaatagcggtggacaagggaaaaaaaaagggactgtggagaaacactttagcacggtgcgacaagatggcgagctcagtgacgctgcttctatggagtct  23735100                                          <-----------GT1                                   <---------ANAC58                                   <---------ANAC58                     <----------DOF2  <---------TOE1(2)           --------->ZAT6       --------->KAN4(2)                                  <---------WOX13(1)          <---------ZAT14      --------->KAN4(1)                                <---------YAB1          --------->ZAT14      <----------TaMYB80                           <----------DOF2          <-------TEIL        <---------KAN4(2)                             <---------DAG2          <---------ZAT18 <---------TOE2(3)                            ---------->DOF2           <--- <<<<<<<<TBF1 ---------->DOF2 ---------->TaMYB80  --------->ZAT6<---------GLK1(1)--------->ATHB12<---   tcttcttctcggtacactaagcgctattcaggtatattcgtgtgtttccttctcactagtcgatcgatttctgcaaagctttatgattgagttcttagat  23735200                                      <---------WRKY38(1)                                   <---------MYB46(3)                                   <------MYB83                              <---------ANAC58                              <---------ANAC58  <---------AHL20(2)                              <---------YAB1    <---------YAB1                          <---------ANAC58      --------->AHL20(2)                          <-------GAMYB--------->MYB52(1)                    <---------AHL20(2)       <------ZmHOX2a(2)  <---------ANAC58------->GAMYB                   <---------ICU4      --------->ARR11(3) <------MYB46(1)  ----------->GT1                --------->ICU4      <---------ARR11(3) <------MYB83--------->DOF5.7(2)                 <---------YAB1    --------->ANAC58     <---------MYB46(3)--------->At5g28300        <---------YAB1              ---    --------->ANAC58    --------->MYB59<---------DOF5.7(2)  --------->ARR11(3)         <---------ANAC46 --------RAV1(1)  ----------------->AGL1<---------TOE1(3)   <---------ARR11(3)   <---------AHL20(2) ------MYB46(3) <-----------GT1    <------MYB46(1)        <---------TOE1(2) <---------YAB1<---------MYB46(3)   tgttgcacgatctagataataccaatttggttgcgattggttaacggtatataattgtcttaggtcttcatgttgattattatttgattcggtgtttgat  23735300                                                <---------MYB52(1)                                               ----------->GT1                                           --------->GLK1(2)                                          <---------ARR14(2)                                      ------>NtERF2                     <---------MYB52(2)                                     <---------SPL7                     --------->MYB46(3)                                     --------->DEAR3(1)          <-----------RAV1(2)         <-------                                     --------->LBD16            <------ZmHOX2a(2)          <---------ICU4                                   <---------LBD16         --------->HSFB2a(2)             --------->YAB1                            --------->TOE2(3)<---------ANAC46 <------ZmHOX2a(1)           --------->ICU4                         --------->YAB1--------->SPL7      ------>ZmHOX2a(1)            --------->YAB1 <---------bZIP60(2)    <---------ATHB12  --------->ARR14(2)<---------TOE1(2)          <-------TEIL -------->HVH21       --------->WOX13(1) <---------HSFB2a(1)<---------TOE2(2)--------->TOE2(3)   gtgacatgtttctgatattagtttcaatcatcttaatcgcggacgattcgggtaatttctcctaggatcagggaacaaacctttatacgttcatcatgag  23735400                                                                                                -----                                                                                                <----                                                                                        <---------ANAC46                                                                               --------->ARR11(3)                                                                               <---------AHL20(2)                                                                               <---------AHL20(1)                                                                     ----------->GT1  <---------MYB46(3)                                  <-------GAMYB                --------->GLK1(2)     <--------P -----              --------->CCA1(2)  <-----------RAV1(1)       <---------TOE2(3)--------->AHL20(2)  <----     <---------ZAT6     ---------->DOF2              <---------AHL20(2)     --------->YAB1 ---------- --YAB1    <---------TOE2(3) <---------GLK1(1)------->TEIL---------->DOF2   <---------AHL20(2)  -----   tcatatagtgtttgagatttgaagccgaaagagttctgttgaattatggacttatttgattaaagaaactggagttaataatatatggttgtttggaaaa  23735500  Previous    Next  AGI:  At5g58710.1    Description:  ROC7 (rotamase CyP 7); peptidyl-prolyl cis-trans isomerase. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-1 precursor (CYP20-1) [Arabidopsis Thaliana] (GB:Q9SP02); similar to CYP5 (cyclophilin 5), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G29960.1); similar to unknown [Populus trichocarpa] (GB:ABK93462.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 23735001    to: 23736991    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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