Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------>NtERF2   ----------->RAV1(2)     ----------->GT1    <---------ANAC58        ---------->DOF2    <---------ETT(2)  <---------ARR14(2)     --------->YAB1     <---------ANAC58     <------ZmHOX2a(1)     --------->ETT(2)----------->ARR10 --GT1         <-----------GT1         --------->ZAT6       <---------YAB1  ---------->DOF2   ttttttatcgtaacaaaataccacttgtttgccttctcgttacagtaggaaaaagaaacgttttcattgtcgacgactcaaagagtagaacctgaagtcc  23699800                     <---------CCA1(1)                     <---------RVE1(1)                    --------->ARR11(3)                    <---------ARR11(3)                    <---------AHL20(1)                       --------->ANAC58              ----------->GT1                 --------->ATHB12           <------MYB83                       <---------AHL20(2)           <------MYB46(1)                   <---------AHL20(1)        <---------MYB52(1)                   --------->AHL20(1)      --------->ETT(2)                       --------->AHL20(2)      <---------ETT(2)                       <---------AHL20(2)                              <-------   ------->GAMYB  ----------->ARR10   ----------->GT1        --------->ANAC58  <---------ICU4--------   gataacagtcgataggtagtaagatattttgaccaaaacatcgtgaatttattgaaatgctgaacgaaaactgatacaacatcatttcatggactcgaga  23699900                                                 <---------TCP15(1)                                                 <---------ARR14(2)                                                 <---------TCP20              ----------->GT1                    --------->ARR14(2)                  --------->ARR14(2)    <---------YAB1 --------->ICU4                --------->PCF2                      <---------ARR14(2) <---------YAB1--------->At5g28300           --------->DAG2                    --------->YAB1 --HSFB2a(2) --------->ANAC58              ---------->DOF2             <---------GLK1(1)        <---- ->HSFB2a(2) --------->ANAC58       ---------->DOF2   <----------CDC5  --------->GLK1(1)  <---------MYB52(1)   actcttattactggcacggtaatattgaatattgatgctaaagtcaaaagggacccgcttagtcatttgtctgatttccaattttaaaatccgtttttga  23700000        <---------MYB52(1)                                            --------->YAB1       <-------GAMYB                                                --------->ANAC58      <---------ANAC46                <---------AHL20(2)            --------->ANAC58     <-------TEIL           <---------ANAC46                      --------->MYB46(3)             <---  --------->ZAT2       --------->ARR11(3)                      <---------WRKY38(1)               <---  <---------ZAT2       <-----------ARR10                      <<<<<<<<<WRKY6                     ----  <---------At4g35610  <---------ARR14(2)               <---------AHL20(2)                       <---  --------->At4g35610  <---------ARR11(3)              --------->AHL20(2)                        <--- ------->TEIL          --------->ARR14(2)              <---------AHL20(2)                        ---- -----AtLEC2      --------->YAB1  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC46 --------->CCA1(2)   atgaagctgcgttgtttcaatgacaaatcttcgtgtttgtataatttagggtctgaaataaatagtcaacaagcaaaacccaaaacgatatgaactggaa  23700100       <---------At4g35610                 ----------->HVH21       --------->At4g35610               ------>ZmHOX2a(1)   <-----------HVH21                 --------->ARR14(2) ------HSFC1(2)          ---------->DOF2--------->TOE2(3) ---MYB83              <---------YAB1<---------ARR14(2)                     --------->YAB1 ----->HSFB2a(1)     --------->YAB1  --------->ARR11(3)             --------------------->WRI1 ------HSFB2a(1)   ------->TEIL   --------->AHL20(2)            --------->YAB1                      < ---MYB46(1)<---------YAB1    ----------->GT1          <------------MYB.PH3(1)                     -- ----->HSFC1(2) <---------ATHB12  <---------AHL20(2) --------->MYB52(1) ---------->ID1   *TSS    ----   ggttgtgtcagattacaaatgaatcatcaaagggattaaaatcctcagacagggataactgttttttcatatttgttctcatcatccacaatctaatttc  23700200                                                 <---------At4g35610                                                 --------->ZAT14        --------->DAG2                           --------->At4g35610            ------->GAMYB       ---------->DOF2    ------>ZmHOX2a(1)      --------->ZAT2      ----------->GT1 ---------AHL20(2)       --------->TOE2(3)       <---------ZAT2    --------->ARR11(3) ------->AHL20(2)   <---------ICU4             <-----------RAV1(2) <---------ARR11(3) <------------CBF ----->TOE2(3)   --------->YAB1        <---------GLK1(2)------>ZmHOX2a(1)      <---------ALFIN1   attaaatcaaaaagagaaaacataattccttagaattcaaagattagcctcagcagtcctagtcaagaagatagtatatcaacacacttattgaaatttc  23700300          <---------ARR11(3)                                 ------>MYB46(1)          --------->ARR11(3)                                 ------>MYB83          <-----------ARR10             --------->AHL20(2)  ----------->RAV1(1)       --------->YAB1 <---------At4g35610                  ------->GAMYB       --------->AHL20(2)     <----------DOF2             --------->MYB46(3)           --------->YAB1  --------->ICU4 --------->YAB1    --------->YAB1    --------->TOE1(3)         ----------->GT1  --------->MYB46(3)  --------->At4g35610            --------->TOE2(3)     <---------TOE2(3)   ------   agtaaccattaatatctaatcttcatcagcctctttatcagattaaacaaaaaaacattaaccaacaaaaacaaattgaagttgttaaatcatattagaa  23700400                                                <------------ATHB5                                                --------->YAB1                                                <--------HAHB4                                                --------->ATHB12                                                <---------ICU4                                                -------->ATHB1                                               <---------ATHB12                                    --------->YAB1                                    <--------HAHB4                                   <------ZmHOX2a(2)                                   <---------YAB1                            -------->HAHB4     --------->ICU4                            <---------ICU4   --------->WOX13(1)                           --------->ICU4  --------->LBD16                         --------->YAB1   --------->ANAC46      <---------At4g35610                        <---------YAB1   <---------LBD16       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------At5g28300   --------->ZAT14  <---------ARR11(3)  --------->YAB1<---------ICU4            <---------ZAT14        --------->HSFB2a(2)  --------->ARR11(3) <-------TEIL  <---------ATHB12       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->DOF2   <---------MYB52(1)    --------->ICU4 <---------YAB1--------->At4g35610  <---------HSFB2a(2)   agaagaactcagtcccttagatgttcataataatgcgatcattaccgcaatcattacaggtctgtaaactgactcatcactgttcttccaaaaacttata  23700500                                       <---------At4g35610                                       --------->At4g35610                                    <---------At4g35610                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      --------->ANAC46                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------ANAC55(2)                               <---------AHL20(2)                                       --------->ANAC55(2)        --------->ARR14(2)     --------->ARR11(3)                                       --------->ANAC58        <---------ARR14(2)     --------->AHL20(1)                                       --------->ANAC58        <---------ARR11(1)     <---------AHL20(1)                                 --------->AHL20(2)        --------->GLK1(2)   --------->YAB1                   <---------ATHB12 ----------->GT1       <---------CCA1(2)    --------->AHL20(2)  <---------YAB1        --------->At4g35610        ----   caaaaacccaaatctagatttcaatacgaataatatatagctgctcagttgtgattctcccaaatcaacatcagcaaaaatcgtataaatacgaaatcac  23700600                                --------->ANAC58                                --------->ANAC58                              ---------->DOF2                     <---------AHL20(2)   <---------WOX13(1)                 --------->MYB46(3)          ----------->GT1 --------->MYB52(1)        <----------DOF2          <---------MYB52(2)     --------->ATHB12--------->AHL20(2) --------->ATHB12           --------->YAB1                <---    <-------TEIL <---------AHL20(2)    <---------YAB1         --------->ANAC58      --------->ARR14(2) ----->DEAR3(1)  --------->AHL20(2)----------->RAV1(1)        --------->ANAC58      <---------ARR14(2)   cgaagattcatagggagaattatataaataacgaaagcaacacgattgattttgcttcaagggaacgaatcatatgggaacgaacaaatccacatagact  23700700  Previous    Next  AGI:  At5g58595.1    Description:  snoRNA. snoRNA Range:  from: 23700106    to: 23700189    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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