Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------------->AtSPL3                  <----------ID1               --------->MYB52(1)                     >>>>>>>>>WRKY18                          ------           --------->ANAC58                          --------->WRKY12                       ---------           --------->ANAC58                       --------->ATHB12                         ----------          --------->DAG2                         --------->MYB46(3)            <---------At4g35610         ---------->DOF2                       --------->MYB52(1)              --------->At4g35610 --------->ATHB12        <-----------RAV1(2) <---------MYB52(2)    <----------DOF2    --------->TOE2(3) ------ZmHOX2a(2)    --------->MYB46(3)     --------->ZAT2        <---------ANAC58    <---------MYB59 --------ARR11(3)   ------->TEIL            <---------At4g35610   <---------ANAC46    --------->TOE1(3) ------->ARR11(3)   --------->SPL7          --------->At4g35610   <---------ANAC58  ------->TEIL  <--   agatcatttggaaaagcaaacgtaccaccaggtttttgggaccatcagctaaccattgacgacaagttgcttcaatgtctgagatgaacctaaaaaagcg  23671400                                                                   <------ZmHOX2a(1)                                                                 <---------TOE1(2)                                                                 --------->LBD16                               --------->ANAC58                 <---------LBD16                               --------->ANAC46            <----------DOF2 ----->HVH21                   --------->ANAC58           <---------DAG2--------->GLK1(2)           - >DAG2                       ---------->DOF2            <---------ARR11(3)           <---------ATHB12 >DOF2  <---------ICU4<---------WOX13(1)                --------->ARR11(3)    ----------->GT1 ======= -------ANAC46      --------->ATHB12            --------->ICU4 <---------LBD16<---------ZAT6  <------   acgggattagtaatgacattagtgattgaatcaaagcaattgaaatcgtgaagatgaatacctttcccaggaagaagctagagtgaaatcatcgaaatgt  23671500                                                   <----------ID1                                                 >>>>>>>>>TBF1  <-------PIF5                               --------->At4g35610  ------->PIF5                            --------->At4g35610 ----------->RAV1(2)                      <---------At4g35610       <------ZmHOX2a(1) <---------At4g35610                     ----------->RAV1(1)      <---------TOE2(3) --------->At4g35610                     ------------------------>ANAC81                         ---- ------>TEIL         <---------ICU4    ---------->DOF2     --------->DAG2         <---------ANAC58 ============RAV     --------->ATHB12 ------------------------>ANAC81 <---------REM1(1)          <--- -----RAV1(1)       <---------YAB1    --------->MYB52(1)  ---------->DOF2         <---------ANAC58   tgcacctgcaaaacaattgctgatcattgaatacaaaaacgaacagcagaagaagaacaaaaaagttttaggatgtagtaactggcatacctcttcttca  23671600                                                     <---------ANAC55(2)                                                     <---------ANAC46                                                     <---------ANAC58                                               <---------AHL20(1)                                               <---------AHL20(2)                                            --------->YAB1     --------->ARR11(3)                   -                                           --------->ICU4      <---------ARR11(3)                   <                              <---------ANAC58 --------->AHL20(2)                                 ===              --------->HSFB2a(2)     --------->ANAC58        <---------CCA1(2)                   ===              <---------HSFB2a(2) --------->HSFB2a(2)--------->ANAC55(2)                          === --------->YAB1               <---------ANAC58 --------->AHL20(1)                                 <-- ----->At4g35610   --------->ATHB12   --------->ANAC58  --------->MYB52(1)                      ----- ------At4g35610  <---------YAB1  <---------HSFB2a(2)<---------ANAC58                           -----   gcatcatcatcttcttcgagatgattcgatttgcttacagaagccataataaattgcgtaacgaatatctctcagtctctctctgagtttgtatgggtaa  23671700              ------>ZmHOX2a(1)              =============================HOX2a_HOX2a              ==============================HOX2a_HOX2a           <------ZmHOX2a(2)          --------->ARR14(2)                   ---------->DOF2          <---------ARR14(2)                <---------HSFB2a(2)          <-----------ARR10                 --------->HSFB2a(2)          <---------ARR14(3)               <---------ANAC46          --------->ARR14(3)               <---------LBD16          --------->ARR11(3)           --------->At4g35610          <---------GLK1(2)          ----------------->AGL1          --------->AGP1            <------ZmHOX2a(2)          <---------ARR11(3)        --------->CCA1(2)         <---------GLK1(1)         <---------ARR11(3)         <---------At4g35610       --------->AGP1 -------->GLK1(1)                  <---------ARR14(2) ---------GLK1(1)  <------ZmHOX2a(2)--------->ARR14(1)               ================================ =========================HOX2a_HOX2a------>ZmHOX2a(2)               ---------->DOF2              --- =================HOX2a_HOX2a      --------->ARR11(3)             ----------->GT1                 <-- ==================HOX2a_HOX2a    --------->GLK1(1)            --------->YAB1                     --- ----ZmHOX2a(1)   <-----------HVH21--------->ARR14(2)         <---------YAB1   <------ZmHOX2a(1)  <-- ---->ANAC58 --------->TOE1(2)    <---------GLK1(1)      ------->GAMYB--------->DAG2     <------NtERF2 ---->ANAC58------>ZmHOX2a(2)    ----------->ARR10    --------->MYB52(1)      *TSS     <---------DEAR3(1)   ggaactcttgcagatcctccgatcacacagacgaagagatccgcttcgggaaagaacaacgacgatgatggtaaagttacaggaaaacgtcgtcgtttga  23671800                                            <---------ANAC58                                            <---------ANAC46                                            <---------ANAC58                                         <---------MYB52(1)                                   <-------MYC2                        <---------YAB1           <----------DOF2         ------->MYC3                       <------------CBF   <---------ANAC58                ------->MYC2                      <---------ICU4   ===================bZIP_DOF     <-------MYC3  --------->ATHB12    --------->ATHB51              --   <---------TGA1a                <---------ANAC58 <---------WOX13(1)--------->ATHB12              --   <---------ANAC58               <---------ANAC58<------------CBF   -------->ATHB1               <-- ============bZIP_DOF             >>>>>>>>CAMTA3<---------YAB1      <---------YAB1              ----- ------>ZAT2        --------->ANAC58    <---------RAP2.6(3)        <----------DOF2             <----- -------ZAT2        --------->ANAC46   <---------ANAC58          ------------>ATHB5            <----- ------>At4g35610   --------->ANAC58   <---------ANAC58        <--------P             ---------->DOF2 -------At4g35610 --------->MYB52(1)   <---------ANAC46  --------->MYB52(1)        --------->AHL20(2)   agctgacttgagactttgacaaacggcatgaacaacgcgtgccgtttcgtttgattgaaaaacgggttgcattattgttcgacgattaaaaaggccaata  23671900                                                               ----------->GT1                                                              ----------->GT1                                                             <-------MYC3                                                             ------->MYC3                                                       --------->ZAT18 ------>HAHB4              --------->TOE2(3)           <---------ZAT18 ------->YAB1              --------->TOE1(3)           --------->ZAT14                          <---- -------YAB1            <-----------GT1             <---------ANAC46                            <---- ---->YAB1           --------->YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxx ----ATHB12          <---------ICU4               --------->ZAT14            xxxxxxxxxxxxxxxx>smallRNA(i) ----ATHB51<---------ICU4  <----------DOF2        <---------ZAT14      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   ataataggcctaatattggcccattataactttaatgctcaaatttaagtagtgaagtgaacacatgttaaaaactaagaccatctctatcaatggtttc  23672000                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                           --------->AHL20(2)                                                                          --------->ARR11(3)                                                                          --------->AHL20(1)                                                                          <---------ARR11(3)                                                                          <---------AHL20(1)                                                                       --------->AHL20(2)                                                                      --------->YAB1                                                               --------->GLK1(1)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------HSFB2a(2)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->HSFB2a(2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ANAC58                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----ANAC58                ----------->GT1         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxsmallRNA(si3)---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ttatctagaaactgttcaaagtatgagaaagagtagaattagtttttcaagtgagaaactctgagaaacccataaaaatatttatatatcatctattgat  23672100                                      <---------ICU4                                    <---------TOE2(3)                      <---------AHL20(2)                      --------->AHL20(2)                     <---------AHL20(1)                     --------->AHL20(2)    <---------YAB1                <---------AHL20(2)<---------AHL20(2)                --------->AHL20(2)--------->AHL20(2)               --------->YAB1    <---------YAB1              <---------YAB1     --------->ICU4           <---------YAB1     <---------YAB1 --------->AHL20(2)        <---------AHL20(1)    <---------AHL20(2)        --------->AHL20(2)    --------->AHL20(2)                                             <XXXXXXX        --------->AHL20(1)--------->YAB1 <---------AHL20(2)                                  <-------GAMYB        <---------AHL20(2)--------->AHL20(2) <---------AHL20(2)                         <----------DOF2     <---------AHL20(2)   <---------AHL20(2)--------->YAB1                             <---------ICU4   <---------YAB1    <---------AHL20(2) --------->ICU4            <-----------GT1--------->TOE2(3)   <---------AHL20(2)--------->AHL20(1) --------->AHL20(2) <----------DOF2  <---------At4g35610   caaatattattttattattaaaatttaattatataattaatatttattaaaatactaatctcttttttttactgatgaagatgccttaatcttttcgttg  23672200                                                                       --------->AtMYB61                                                          <---------TCP16(1)                                                          <---------PCF5        --------->ARR11(3)                                --------->TOE2(3)         --------->PCF2        <---------ARR11(3)               --------->ARR11(3) --------->AHL20(2) <---------At4g35610    ---------->DOF2               <---------ARR11(3)<---------YAB1      <---------ZAT2   --------->MYB46(3)           ------>ZmHOX2a(1)   <---------ICU4   <---------YAB1      --------->ANAC46   ------>ZmHOX2a(1)           <--------HAHB4 --------->YAB1     --------->ANAC58                   <  --------->TOE2(3)           --------->ICU4 --------->ICU4      --------->ANAC46                  -- XXXXXXXXXXXXXMIR3932A/B      <---------YAB1 <---------ATHB51    --------->ANAC58<---------YAB1    <-   tcatcctaaattcctaatatctgtattttgtgatcattaaaaacacaattatgttagcagggaccacaatccaccactaaaagataattatctgtaagaa  23672300  Previous    Next  AGI:  At5g58510.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60454.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21406.1); similar to hypothetical protein OsI_010849 [Oryza sativa (indica cultivar-group)] (GB:EAY89616.1); contains domain PTHR21422 (PTHR21422); contains domain PTHR21422:SF3 (PTHR21422:SF3) Range:  from: 23665379    to: 23671778    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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