Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->TOE2(3)                     <-------GAMYB                                           <---------LBD16                    ----------->GT1                                        ----------->HVH21                <---------SPL7                                             --------->ANAC46   =======          <---------YAB1                                                  --------->SPL7      <------ZmHOX2a(1)        --------->YAB1<---------MYB52(1)                           --------->At4g35610   <---------REM1(1) -------YAB1 ------>ZmHOX2a(1)                  ---------->DOF2 ----------->ARR10<---------DEAR3(1)   atgaaggctattatcctcggtaccgttaatctcgctatctgagttctcatcaaagggactgaagataacatctgcatacgacggaggctcgatgtaggag  23643600                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                      --------->ARR11(3)                                          <--                                      <---------ARR11(3)                                          ---                                      --------->ARR14(2)                                        <----                                      <---------ARR14(2)                                        <----                                     <---------GLK1(1)                                          <----                                     --------->GLK1(1)                                          <----                                    ----------->ARR10                                          <-----                                  --------->LBD16                                              ------                                 <---------ANAC46                                              <-----                                --------->At4g35610                                            <-----                                <---------At4g35610                                            <-----                                <---------LBD16                               --------->ZAT2   ------                             <---------At4g35610                              <---------ZAT2  <------                          --------->At4g35610                                 --------->At4g35610 ---                      ----------->HVH21                 <---------ANAC46      ----------->RAV1(2)<---           ------>ZmHOX2a(2) --------->ZAT2          --------->ALFIN1         <---------At4g35610----         --------->ARR14(2)  <---------ZAT2          <---------DEAR3(1)     <-----------RAV1(2)------         <---------ARR14(2) <-----------RAV1(1)    <------ZmHOX2a(1)  --------->YAB1          <------     <---------ZAT2 --------->At4g35610            =========================HOX2a_HOX2a      <-------     <---------At4g35610  <---------ZAT2        <------ZmHOX2a(1)    <------ZmHOX2a(2)<---------ICU4-     --------->ZAT2 <---------At4g35610<---------HSFB2a(1)<------NtERF2   --------->GLK1(2) ------->GAMYB     --------->At4g35610  <---------At4g35610 <---------TOE1(2)  --------->ALFIN1     --------->YAB1< =================HOX2a_HOX2a--------->At4g35610============================HOX2a_HOX2a  --------->MYB52(1)   ttatcgctgctgatcggcttagagctgaagctgctgcggaaatcttcgtaggaggatggcgcaaggagtggatcagaatcagctggaatcataacggtcg  23643700    xxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxx>smallRNA(fl3)    <---------ANAC46   <------NtERF2   --------->ATERF1(1)  ------>NtERF2  <---------RAP2.3(1)  <---------ERF1 <---------RAP2.3(3) <---------RRTF1(3) <---------ANAC46 <---------RRTF1(2) <---------DREB2C(2) --------->ATERF1(2) <---------ATERF1(2) <---------DEAR3(1) <---------RAP2.6(2) <---------RAP2.3(2) ------NtERF2 --------ATERF1(1) --------MYB46(3) --------ERF1 ---->NtERF2 ------->ABI4(2) -------DEAR3(1) ------>ALFIN1 -----DEAR3(2) --MYB83 --MYB46(1) -----MYB46(3) ----MYB46(3) --->MYB111(2) ----DEAR4(1) ----DEAR3(1) ----DREB2C(2) --->MYB46(2)                                                                 --------->bZIP60(1) ---MYB55(1)         <---------MYB46(3)                                    --------->WRKY12 -------->HVH21  --------->ANAC58                                          ----------->HVH21 ----GAMYB       <---------ANAC55(2)                                       --------->WRKY38(1) ----->ATERF1(1)<---------LBD16                                           <---------MYB52(1)        < --->MYB55(2) ----------->HVH21                                           --------->DOF5.7(2)      <- ---ORA47(1) <-----------HVH21              <---------SPL7               <-------GAMYB             <- ----HVH21   <---------PCF2    --------->ALFIN1  --------->At5g28300  <---------At5g28300       <---- -------->ATERF1(1) ------->TEIL     <---------bZIP60(2)             <-----------GT1         <------- ---------ABI4(1)--------->ANAC58 ----------->HVH21                ------->TEIL      <---------CCA1(2)   gtggcggcgagagcgggtcacggacgttggagagtgttgacatggcgctacggtaaccagagttcgatgtatcaccgttgacatcgcttatcttcagagg  23643800                                         <<<<<<<<<NAM                                    <---------ARR11(3)                              <-----------GT1     <---------ALFIN1       --------->GLK1(2)    --------->MYB46(3)     --------->ARR14(2) -----------HVH21          <---------ARR14(2) -----MYB83                <---------GLK1(2) -----MYB46(1)           ----------->ARR10  <----------DOF2            <---------ARR14(2)       <---- --ZmHOX2a(1)      <---------TOE1(2)<-----------ARR10                  --------->ARR14(2)       <---- --At4g35610      ------>ZmHOX2a(1)<---------CCA1(2)   <---------TOE2(3)                       <-----   atggtcaccaccatctactcctaggtcgagattctccatatcatccctttgcgcattgagattagtttcttcgaatccatcggcattctctgagcccatc  23643900                                                                                        --------->LBD16                                                                                        ----------->HVH21                                                                                       --------->LBD16                                                                                      ----------->RAV1(2)                                                                                      <---------LBD16                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  <---------ARR11(3)                                                                                  <---------ARR14(3)                                                                                  --------->ARR11(3)                                                                                  --------->ARR14(3)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                 --------->GLK1(1)                                                                                 <---------GLK1(1)         <---------LBD16                                                   --------->MYB52(1)       <      <---------ZAT14                                          --------->ATHB12  <----------TaMYB80<- -----ICU4                   <---------At4g35610      <---------TOE1(3)  --------->MYB46(3)    ------ ----HAHB4        <----------ID1          --------->MYB52(1)  <---------YAB1    ----------->ARR10 <-- ----ATHB12     --------->MYB52(1)<---------WOX13(1)  <---------TOE2(3)  <---------MYB52(2)    ------   atttcgacttctctggagtaacgacgaactaagctaattgaaattaacagaaaattagggtttgatgatttgggaacaaacggagatcccctgaaatgtg  23644000                                                                                                  ---                                                                                                 <---                                                                                         <---------ALFIN1                                                                                         --------->ANAC46                                                                                      --------->ZAT18                                                                                      --------->ZAT14                                                            <---------PCF2         <---------ANAC58 <                                                            --------->ZAT18        <---------ANAC58 =                                                           <------NtERF2           <---------ANAC46 <                                                         --------->ALFIN1         <------------------                                                        ------->PIF5             --------->MYB52(1)<-                                                        <-------PIF5           <---------MYB52(2)<---        <---------DEAR3(1)          --------->LBD16    --------->ZAT2  <---------ZAT2 <---------ZAT18     ----------->HVH21            <---------LBD16      <---------TGA1a --------->ZAT2 <-------TEIL<-- ----------CDC5                  --------->MYB52(1)    <---------ZAT2  <---------At4g35610       <--- --------At4g35610         ======================================bZIP_DOF  <------ZmHOX2a(1)    <---- ----->HVH21 *TSS        <---------AHL20(2)          <-----------RAV1(2)<-----------RAV1(2)   ------- -------ANAC46           --------->AHL20(2)    ==================bZIP_DOF --------->At4g35610 <------ ----->TGA1--------->ALFIN1---------->DOF2     ---------->DOF2         --------->At4g35610   <-------   acgctgagcgacggtgtggctatcgaattaaaagaaaccggagtgactaaaatgcgcaggtggggactatgggagcaggagactaacgtgcacaccgtgg  23644100              <-------PIF4              ------->PIF4              <-------MYC3              ------->PIF5              ------->MYC2              <-------MYC4              <-------PIF5              ------->MYC3              <-------MYC2              ------->MYC4             ----------->GT1             =======================bZIP_DOF        <---------DEAR3(1)        --------->ALFIN1<---------ANAC46    <---------ANAC46    <---------ANAC58 ======================MYC_MYB <--------P  --------->ANAC58 ------>LBD16--------->ANAC58 ------ANAC58--------->O2  ---------->DOF2 -----------HVH21  <---------ICU4                                                          <---------TOE1(3) ======================MYC_MYB                                                             <---------TOE2(3) -------GAMYB--------->ANAC55(2)                                                          <---------- -----TaNAC69(2)  --------->ICU4                                                        <-----------HVH21 -----NtERF2 --------->bZIP60(2)                                                ----------->HVH21 ------ANAC58<---------ANAC55(2)                             <-------TEIL     --------->At4g35610 -------MYB46(3)  <---------YAB1                          <---------ANAC46   <---------ARR14(2) ------ANAC46=======================bZIP_DOF              <---------ANAC58   --------->ARR14(2)     - --NtERF2    --------->TGA1a                              <---------ANAC58   --------->GLK1(2)  ----- -->ALFIN1   <---------TGA1a                   --------->GLK1(2)            <---------GLK1(2)  ------ ---DEAR3(1) <---------O2<----------DOF2       <---------ARR14(2)    <---------ANAC46  <----------DOF2 ----HVH21<------NtERF2 <---------ANAC58       --------->ARR14(2)   <-----------------------TaNAC69(2)   cgggttaggggtggcacgtgataatggcttaaagtctcgtcaattgacaaatctgccaatgcgtacatgtgatgtgaagaatctgacaactttcaggtaa  23644200                                                        <---------ANAC46                                                  -------->ATHB1                                                  --------->ATHB12                                                  -------->HAHB4                                                  --------->ATHB51                                                  <---------ICU4                                                 <---------ATHB51                                                 --------->ICU4                                               --------->YAB1                                               <---------ICU4        --------->DEAR3(1)                    <---------AHL20(2)       <------NtERF2                          --------->AHL20(2)                               <-----     <---------DEAR3(1)                     --------->YAB1                         <---------ATHB12 < -RAV1(2)                                   --------->TOE2(3)              <-------TEIL        <----- -------->ZAT14<---------ANAC58    <---------GLK1(1)   <---------LBD16  <---------At4g35610   ------- ---->DAG2     <---------ANAC58   ---------->DOF2<---------YAB1         --------->At4g35610   <------ ---->DOF2<---------MYB52(1)     <------ZmHOX2a(1)<---------AHL20(2) ---------->DOF2     <---------YAB1   agtatagtcgccgatgggcttgtttaggcccattaggaaagcccaatattaattattgacggagatagccatatagctgcatccaaacattcttattagg  23644300         --------->At4g35610         <---------At4g35610      <---------At4g35610   ---------->DOF2                   --------->ARR14(2)  <---------MYB52(1)        ------>ZmHOX2a(2)                                     --------->MYB46(3) -MYB83  --------->ZAT2     ====================HOX2a_HOX2a                    <---------WRKY12 ---------ANAC46      --------------------->WRI1      --------->ARR14(2)       <---------WRKY38(1) -MYB46(1)      <-----------ARR10    <---------ARR14(2)             <---------TOE2(3)     ---------->DOF2 -->MYB59<---------ZAT2 ----------->HVH21------>ZmHOX2a(1)     <----------DOF2--------->WRKY18(1) ---TOE2(3) --------->At4g35610     <---------GLK1(1) <---------ARR14(2) ---------->DOF2  <---------ICU4   tttcgttaagcagctgcagagcttccctgatcgtgtcgaaatcctgtgtttaactggaaccgagtcttttgatgtaaaaggtcaacaactcataaagaca  23644400                                                                                --------->ALFIN1                                                                              <---------TGA1a                                                           --------->MYB55(2) <---------bZIP60(2)                                                           <---------MYB46(3) <---------O2                                                          <---------ANAC58    <---------ANAC58                                                          <---------ANAC46    <---------ANAC46                                                          <---------ANAC58    --------->O2                                                         <---------LBD16      --------->TGA1a                                                         <---------At4g35610  <---------ANAC58                                                        --------->MYB52(2) ----------->HVH21                                                     <-----------HVH21    --------->DEAR3(2)      ---                                               --------->ARR14(2)      --------->LBD16     <---------ZAT2             <---------ETT(1)      <---------At4g35610==================================MYC_MYB   ---     <---------TOE2(3)             --------->At4g35610<--------P     <---------LBD16       ----------   ---------->DOF2       <---------CCA1(2)     <---------ARR14(2)   --------->MYB52(1)     --------->ZAT2   cttcaaaaaggttttccgacaaaattcttatcttctcagatgtcttccaaattcgggttagcgggtggaataccggagcgacgtgttcgacccatctggg  23644500  Previous    Next  AGI:  At5g58440.1    Description:  phox (PX) domain-containing protein. similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41442.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21370.1); contains InterPro domain Phox-like; (InterPro:IPR001683); contains InterPro domain Vps5 C terminal like (InterPro:IPR015404) Range:  from: 23641084    to: 23644013    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g58450.1    Description:  binding. similar to hypothetical protein OsI_018849 [Oryza sativa (indica cultivar-group)] (GB:EAY97616.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21372.1); similar to Os05g0345400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055256.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 23644052    to: 23649449    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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