Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->ANAC46                                                                              <---------ZAT18                                                                              <---------ZAT14               <----------DOF2                                <---------YAB1  --------->ZAT14            --------->GLK1(2)                          <----------DOF2      <---------At4g35610           <---------GLK1(2)                      <-------TEIL<------ZmHOX2a(2)  --------->ANAC58         ----------->ARR10                       --------->CCA1(2)          --------->At4g35610       --------->CCA1(2)                        --------->ARR11(3)   --------->ALFIN1    --------->ZAT6     --------->YAB1 <---------HSFB2a(2)   ----------->GT1    --------->ARR11(3)  --------->ANAC58  ---------->DOF2   --------->HSFB2a(2)   --------->YAB1     <---------ARR11(3)--------->ZAT6 <------   gtctcaaagataagattcttttatagaaaaatagtaagagggaatagtaagatacagctttaagatcataggtgaggcagaacactccataacactcttt  23599200                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             --------                    <---------ANAC58           <----------DOF2                              <--------                    <---------ANAC58  <---------ANAC58                        <------ZmHOX2a(2)           ------>MYB46(1)            <---------ANAC58                       <---------ARR11(3)           ------>MYB83              --------->ZAT2   --------->TOE2(3)      --------->ARR11(3)          --------->WOX13(1)       <------ZmHOX2a(1) --------->YAB1--------->ANAC58  --------->DAG2         --------->AtMYB61      <-----------RAV1(2) <---------YAB1 --------->ANAC58 ---------->DOF2 ----DOF2--------->MYB46(3)   ----------->RAV1(1) --------->YAB1 ---------->DOF2 --------->At4g35610   cttcgtcttcaccaatccattttcttgcacagcaacaggagcttggctacttttatcatcaattcacaaaagcatctaagatcagataaagttgatttat  23599300                                                                                          --------->ALFIN1                                                                                       --------->ALFIN1                                                                         <-------GAMYB <---------AtMYB61                                                           --------->GLK1(2)      --------->ALFIN1 ---AHL20(2)                                              <---------ARR11(3)    <---------ANAC46 -->AHL20(2)             ---------->DOF2                  --------->ARR11(3)    <---------ANAC58 --AHL20(2)          --------->At4g35610                  <---------GLK1(2)     <---------ANAC58 ->AHL20(2)        <------ZmHOX2a(1)         --------->MYB52(1)    --------->ALFIN1--------->REM1(2) -WOX13(1)   --------->ATHB12        <----------DOF2     <---------RVE1(1) <---------MYB46(3)   >>>>>   ttaagagagaagaaacgattaggagcttaaagagacttacttttgagaaacggagcaagagattttggagttgggagttgttgtgtggagaggtggaaga  23599400                                                                          --------->TGA1a                                                                          <---------TGA1a                                                                          --------->DEAR3(1)                                                                          --------->bZIP60(1)                                                                          =====================MYC_MYB                                                                          --------->bZIP60(2)                                                                          <---------bZIP60(1)                                                                          --------->O2                                                                          <---------O2                                                                          =======================MYC_MYB                                                                          <---------bZIP60(2)                                                                         --------->ATERF1(1)                                                                         <------NtERF2                                                                        ------>NtERF2                                                                        <---------ATERF1(1)                             --------->ICU4                            ----------->HVH21      -------                     --------->DAG2                                 --------->DAG2      <--------P                   ---------->DOF2                                ==================bZIP_DOF  <------               <---------ANAC46          <-----------------------TaNAC69(2)            <-------GAMYB        ---------->DOF2  <-------TEIL   --------->CCA1(2)         ---------->DOF2     <---------MYB46(3) >>>>TBF1    <---------MYB46(3)        <----------ID1        ----------->GT1       <---------LBD16 --   agaagatggcgaaagtggtttgaaaggtgcaattttgaagagagacgaagccgagacgaagagttgagaaaaggcgacgtcgttttgggggttgagagct  23599500                                                                               ----------->RAV1(1)                                                                              ----------->HVH21                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                         <----------CDC5                                                                         <------NtERF2                                                                        ------>NtERF2                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC58            <-          <---------ICU4                       --------->ARR14(2)     --------->ZAT18        -------- -->ZAT18 --------->ATHB51               --------->GLK1(1)            <---------ZAT18  ----------->GT1 ---ZAT14--------->ICU4                  <---------GLK1(1)           <---------ANAC58--------->ZAT14- ---->NtERF2                    ---------->DOF2<---------ARR14(2)    <---------ANAC58<---------ZAT14<   ctgccatggccattatcgcacagacacaaactgtgaaagtgagatttcagaactggaactatggagagagagcgcgccaagcgacagagtagtaagaaag  23599600       --------->GLK1(1)               <-----------HVH21   <---------LBD16                  <---------O2  --------->ALFIN1             ----------->HVH21                        <----------DOF2 -----ZmHOX2a(1)          --------->At4g35610                    <---------CCA1(2) -->DOF2--------->GLK1(2) <---------ZAT2 <-----------GT1  <---------ALFIN1                   -------- -------->ARR14(2)   *TSS <---------At4g35610 <----------DOF2  <---------MYB52(1)      <------------- ---------ARR14(2) --------->DAG2   --------->O2         ------>ZmHOX2a(1)     <----------DOF2    ---   aggattggggaatctatggataaggctcagctcttgacacttgtcactcttttagcatcctcaccgtttatcttcttttgacttttaggcccagttaagg  23599700                                                                 <---------ETT(2)                                                                 --------->DEAR3(1)                                                                <------NtERF2                                                                --------->ATERF1(1)                                                                --------->RAP2.3(1)                                                               <---------RAP2.3(1)                                                               <---------ATERF1(1)                                                               --------->LBD16<---------At4g35610                                                               ------>NtERF2  --------->LBD16                                                              <---------DEAR3(1)                                                              <---------ATERF1(2)               --------->TOE1(3)                              --------->DEAR3(1)--------->WRKY12           --------->KAN4(2)                                  --------->ATERF1(2)------>NtERF2          <---------KAN4(1)                                  --------->ATERF1(1)----------->HVH21          --------->KAN4(1)                     --------->ARR14(2)            --------->At4g35610          <----------TaMYB80                    <---------ARR14(2) <------NtERF2--------->WRKY38(1)   --------->MYB52(1)*TSS                       <---------ARR11(3)----------->RAV1(1) -->DOF2 ---------->TaMYB80                     --------->ARR11(3)------>NtERF2 --------->WRKY45 ---- ----AGL1<---------KAN4(2)                      <---------GLK1(2)----------->HVH21          --------- --------->CBF----------->RAV1(2)          ------>ZmHOX2a(2) <---------LBD16--------->MYB46(3)  -----   cccaataacagaatatacctgaaaccgttcgaatttgatcactgatcggagattttcgtcttcgccggcgacattgcatccgctgaccagagaattaaaa  23599800                            <--------ATHB1                                                <---------ANAC58                            <---------ICU4                                        <<<<<<<<<ARR1                            --------->YAB1                                        <<<<<<<<<ARR1                           --------->ICU4            <---------At4g35610          <<<<<<<<<ARR2       <----------DOF2     <---------ATHB51          --------->At4g35610   ----------->RAV1(1)   <---------RAP2.6(2)     <---------ATHB12         <---------MYB46(3)  --------->HSFB2a(2) ----->DAG2      ---------->DOF2                   <--------P <-----------GT1     <<<<<<<<<ARR2 >AHL20(2)    <---------HSFB2a(2)                 <---------ANAC58   ------>ZmHOX2a(1)    <---------ANAC58 ----->DOF2  ------>ZmHOX2a(2)                    <---------ANAC58------>ZmHOX2a(1)  ------>ZmHOX2a(1)   aagttgcgactttgatcgcgaaagtttcaataatggaggtcattgatcaatgggttgctgaatttttcctccttcgacaacacaatcctagggcttcccc  23599900                                                                        ----------->HVH21                                                                      --------->ANAC55(2)                                                                      <---------ANAC58                                                                      <---------AtLEC2                                                                      <---------ANAC55(2)                                                                      <---------ANAC58                                                                      <---------ANAC55(1)                                                                      <---------ANAC46                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                                        --------->RVE1(1)                                     ------>NtERF2      --------->GLK1(1)                           <                            <---------HSFB2a(1)         --------->CCA1(1)                         <--                          <------ZmHOX2a(1)   --------->DAG2   <---------ANAC58                ------                ----------------->AGL3       ---------->DOF2   <---------ANAC58              ------>ZmHOX2a(2)               ------>NtERF2--------->HSFB2a(1)         <---------CCA1(1)               <---------WOX13(1)            <---------RAP2.3(1)   ------>ZmHOX2a(1)     <---------GLK1(1)             --------->ATHB12           <---------RRTF1(3) --------->GLK1(2)         <---------RVE1(1)    --------->At4g35610<----           <---------DEAR3(1) <---------ARR14(2)       --------->ARR11(3)  --------->bZIP60(1)<------           <---------RAP2.3(3)--------->ARR14(2)       <---------ARR11(3)  <---------bZIP60(1)<------   tattaatctgatttcggcgctaaaattaggagattcctccgactgcataaagctcaagatatcttccgtcttgcgtgacatctccaattcattgatccga  23600000                                  --------->GLK1(2)    <---------WOX13(1)           <---------GLK1(2)        ----------->RAV1(1)  --------->ATHB12          <---------HSFB2a(2)         <---------At4g35610 <---------YAB1             --------->HSFB2a(2)         --------->At4g35610                         - -------TEIL            ------>ZmHOX2a(2)   --------->HSFB2a(1)                             <-------- -------SPL7          --------->ARR14(2)    <---------HSFB2a(1)                           <---------At4g35610 --->LBD16            <---------ARR14(2)    --------->HSFC1(2)              <---------ARR14(2)      < -----TOE1(2)         --------->ARR11(3)    <---------HSFC1(2)              --------->ARR14(2)    <-- ---TOE1(1)           <---------ARR11(3)   ----------->ARR10                <---------GLK1(2)     <-- ---TOE2(1)     <---------HSFB2a(1)        <-----------ARR10<---------HSFB2a(1)           --------->At4g35610   ggtacgattgatgagggaatgctcgatcttctcgagattcttgagaagcttctcttgcagcaacattcgctactcatggattctcacaagtctgcttatt  23600100  Previous    Next  AGI:  At5g58330.1    Description:  malate dehydrogenase (NADP), chloroplast, putative. similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G56720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70407.1); similar to Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH) (GB:P21528); similar to Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH) (GB:O48902); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase; (InterPro:IPR008267); contai Range:  from: 23596948    to: 23599621    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g58340.1    Description:  DNA binding. similar to TRFL5 (TRF-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G15720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65086.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 23599721    to: 23601638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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