Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     ----------->GT1                                                                  --------->DAG2                                     --------->ZAT2               <---------TOE1(3)                                     <---------ZAT2              --------->SPL7                                     --------->At4g35610        <---------MYB52(1)                              ==================================HOX2a_HOX2a                              <------ZmHOX2a(1)                --------->LBD16          --------->YAB1                     <---------ANAC55(2)                      --------->ANAC55(2)     --------->ANAC58                     --------->ANAC55(2)                      --------->ANAC46        --------->ANAC58                 --------->GLK1(2)   <---------At4g35610      <---------ANAC55(2)   ---------->DOF2       --------->ARR11(3) --------->ICU4                 <------ZmHOX2a(2)         <------ZmHOX2a(1)      <------ZmHOX2a(1)----------->HVH21                 ===========================HOX2a_HOX2a    <---------TOE2(3)--------->At4g35610                 =================================HOX2a_HOX2a  --------->CCA1(2)  <---------At4g35610                --------->ARR11(3)   <------ZmHOX2a(1) --------->ARR11(3)<-----------RAV1(2)                  <---------ARR11(3) <---------TOE2(3)       <-   gaagataaggatgttgaagaatcaggtgatgaggaacacagctcaagagccactaagagatcatccgtaaggttactaaggaagaggaaagcataagaga  23585900                                                     --------->ZAT6                                                --------->At4g35610                           <---------AHL20(2)   <---------At4g35610                       <---------AHL20(2)    --------->At4g35610                      <---------ARR11(3)     <---------At4g35610          <---------ARR14(2)                      <---------AHL20(1)   <---------ZAT14                --------->ARR14(2)           <---------REM1(2)            <---------ANAC58          <---------ICU4         --------->ETT(2)<---------AHL20(2)--------->ZAT18        --------->MYB52(1)        ------->GAMYB   <----------DOF2   <---------CCA1(2)  <---------ANAC58       --------->YAB1             -------->P ---------DOF2--------->ANAC46          <---------ANAC46      --------->ZAT6          <-----------GT1   gctttcttttgtctacatgccccatatatttttttggtttttgagtgggctgctaatactactaatactaatggcatatttgtaagtttatcaacccaag  23586000                                                     <---------MYB46(3)                                                    <---------AtMYB61                                                  <----------DOF2                                              <---------RAP2.6(2)            ------>ZmHOX2a(1)                                             <---------At4g35610         <-----------GT1            <-----------GT1             --------->At4g35610       <---------AHL20(2)       ---------->ID1       <---------AGP1   --------->At4g35610 <---------AHL20(2)                 -   <----------DOF2   ---------->DOF2    <---------At4g35610      --------->AHL20(2)    <---------MYB46(3)   gtaaactttgtttttttcaatttgaaagtagaactgaaactctgatgagcggctttggttcggaaatttaaattgtttcctctcagttttggttactagg  23586100                                           <-----------TGA1                                           <-----------HVH21                 --------->MYB52(1)                                      -------->P                            <---------ARR14(2)                        <-----------GT1   --------->ANAC46    --------->AHL20(2)      --------->At4g35610             ------>MYB46(1)         <---------AHL20(2)        <---------AHL20(2) --------->YAB1      <---------YAB1 --------->AtMYB61        --------->AHL20(2)        --------->AHL20(2) -------->ICU4     <---------At4g35610------>MYB83  --------->AHL20(2)      <---------ZAT14   cgatgatgagctatatacttctgatgataccatttagaccaactccgtcacaaaataaacaaattaaaatggagagagtaaacgggctattaaatatcaa  23586200                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                       <---------TOE2(3)         <---                                                           --------->At4g35610                   ----                                                           <------NtERF2                         <---                   --------->DAG2                          <---------At4g35610                  <----                  ---------->DOF2        <----------DOF2  <---------DEAR3(2)            --------->ANAC46                 ---------->DOF2     <-----------GT1     <---------RAP2.3(3)        ------>ZmHOX2a(1)             --------->YAB1 <---------AHL20(2)           <---------DEAR3(1)   <----------DOF2   -----            <---------YAB1 --------->AHL20(2)     <---------At4g35610 <-----------GT1   *TSS---------   aactgggccttactatgacaaaaggcccatttaatctattttccttttatttagatgagtcggctcacaaattaacatttcttttcctctactccaaaga  23586300                                                                                            <-------GAMYB                                                                                            ---------                                                                                           <---------MYB46(3)           ---------->DOF2                                                                 --------->MYB55(2)       --------->ANAC58                                                                    <--------- -------ARR11(3)                                                   ------>ZmHOX2a(2)     <---------At4g35610 ------>ARR11(3)                                                  --------->GLK1(1)      <------NtERF2 ----->RVE1(1)                                                    <------ZmHOX2a(2)     ------>NtERF2 ------RVE1(1)                                                    <---------GLK1(1)   --------->LBD16 ----->CCA1(1)                                                   <---------AGP1       <---------LBD16 ------GLK1(1)                                                   <---------ARR11(3)   <---------At4g35610 ----->GLK1(1)                                                   --------->ARR11(3) <---------LBD16 ------CCA1(1)       --------->AHL20(2)               <---------ALFIN1            <---------SPL7<---- -----ARR11(3)       <---------AHL20(2)  <---------DAG2------>NtERF2             <---------ANAC58 ---->ARR11(3)      --------->AHL20(2)   <----------DOF2     ---------->DOF2     <---------ANAC58 ->DOF2--------->ANAC58          --------->WOX13(1)  --------->MYB46(3) ---------->DOF2<---------DEAR3(1)   tatctcggttcgcaaaagtctatttaatttcatagcaatctcacttttctcttcccccaccctcaaagatctctcaaagaatggcttccgcggctgttgc  23586400                                                                           <------NtERF2                                                   --------->DEAR3(1)     <------NtERF2                                                 --------->LBD16          ------>NtERF2                                                 --------->ZAT14------>ZmHOX2a(2)                                                 --------->At4g35610      <---------ATERF1(1)                                                 <---------At4g35610     --------->RAP2.6(2)                                                --------->DEAR3(1)       --------->DEAR3(1)                                               --------->ANAC46<------ZmHOX2a(2)                                      <---------ARR11(3)       --------->GLK1(1)   --------->HSFC1(2)                 <---------AGP1          <---------AGP1   ---------->DOF2   --------->HSFB2a(1)     --------->ORA47(1)<---------ALFIN1 --------->ARR14(2)   <---------HSFC1(2)     --------->DEAR3(1) --------->ANAC46 <---------ARR14(2)   <---------MYB46(3)    --------->At4g35610--------->MYB46(3)<---------ARR11(3)  <---------TOE1(2)    <---------ALFIN1 ------>ZmHOX2a(2)     --------->ARR11(3)        <---------WRKY18(1) >At4g35610          <-----------HVH21--------->ARR11(3)      --------->ARR14(3)      <----------DOF2 --RAV1(1)<---------WRKY18(1)         ------->TEIL<-----------RAV1(2)   <---------RAP2.6(2) -----AtLEC2    ---------->DOF2    <---------WOX13(1)         <---------ARR14(3)     <---------ANAC46   atcgatggttcttgaccctaaagcatcaccggccttgatggatctatccaccgcagacgaagaagatctctatggccgcctcaaatcgcttgaacgacaa  23586500           <---------GLK1(1)                                                     <-----------HVH21           --------->GLK1(1)                  --------->GLK1(2)   <---------ANAC58                <--    --------->ZAT18                  --------->ANAC58             <---------ANAC58 <---------WRKY12--    <---------ZAT14           ---------->DOF2<---------GLK1(2)    <---------ANAC46--------->WRKY18(1)    --------->ZAT14    --------->GLK1(2) ---------->DOF2   --------->At4g35610  <----------ID1    <-- <---------ZAT6    --------->YAB1    --------->ANAC58      <---------At4g35610  ----------->GT1   <--   ctagagttcaccgatatccaagaagaatatgtgaaagacgagcaaaagaatctcaaacgagagctgttacgagcacaagaagaggtcaaacgaattcaat  23586600                                                            <-----------------AGL3                                                           --------->GLK1(1)                                                           <------ZmHOX2a(2)                                                          --------->AGP1                                                          <---------ARR14(2)                                                          --------->ARR11(3)                                                          --------->ARR14(2)                                                         <---------CCA1(2)                                                        <---------DEAR3(2)                                                     <-----------HVH21    <----------DOF2                  <------ZmHOX2a(2) <---------TOE1(2)                        ----- -------ANAC58 <-----------HVH21    <---------AGP1 <------NtERF2                         --------->GLK1(1) ------->LBD16<------MYB46(1)    <--------P    ------->GAMYB------>ZmHOX2a(2)            --------->ARR14(2) -------ANAC55(2)  <---------At4g35610      --------->MYB52(1)                           <---------GLK1(1) -------ANAC58<------MYB83     ----------->GT1--------->ANAC46              <---------ATHB12    <----   ccgtgcctttggtgataggtcagttcatggagatggtagatcagaacaacggcatcgtcggatctactactggctccaattactatgtcagaattctcag  23586700                                                          ------->GAMYB                                                         --------->DEAR3(1)                                                         --------->ANAC58                                                         --------->ANAC58                                                <---------MYB52(1)                                              --------->DEAR3(1)                 --------->LBD16                                              --------->ANAC46                  <---------HSFB2a(2)   --------->YAB1                           <---------At5g28300                 --------->HSFB2a(2)  <---------ATHB12                --------->LBD16  --------->ANAC58            <---------LBD16 --------->ANAC58                <---------ANAC58  --------->ANAC58           ------>NtERF2 --------->ANAC58           --------->At4g35610<-----------TGA1             <---------ANAC58      <-- ---->At4g35610             <---------At4g35610<-----------HVH21            <---------ANAC58      --- -----At4g35610   ---------->DOF2<---------ANAC58<---------ALFIN1   <---------TOE2(3)<---------At4g35610   cacaatcaatagagaactcttaaagccttctgcttccgtcgctcttcaccgtcactccaacgcccttgttgatgttttgcctccggaggctgattctagc  23586800  Previous    Next  AGI:  At5g58280.1    Description:  transcriptional factor B3 family protein. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G19184.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21292.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 23584564    to: 23585896    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g58290.1    Description:  RPT3 (root phototropism 3); ATPase. Identical to 26S protease regulatory subunit 6B homolog (RPT3) [Arabidopsis Thaliana] (GB:Q9SEI4); similar to RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A), ATPase [Arabidopsis thaliana] (TAIR:AT4G29040.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96620.1); similar to unknown [Populus trichocarpa] (GB:ABK95490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21297.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); Range:  from: 23586288    to: 23588566    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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