Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                -----                                                                                               <-----                  <---------At4g35610                                                         <------ZmHOX2a(2)                  <---------ZAT2                                 --------->ZAT14     --------->DAG2    --------->KAN4(2)                                     <---------GLK1(1) ----------->GT1  --------  <-------TEIL   --------->ANAC58                     >>>>>>>>>TBF1        <---------TOE2(3) -------- ------------>AtSPL8       --------->ARR11(3)     --------->At4g35610   <---------REM1(1)    <------- -------------AtSPL8   ------>ZmHOX2a(1)       --------->At4g35610    --------->CCA1(2)      <------- ------>DOF2     --------->ANAC58            --------->YAB1      <---------ZAT14    ---------->DOF2<-   aaagtacattccattcggcaagctcctaagaaattgaaaacaattgatcatcagaagaagaaatcactgaagagatgaaggaaaaaaaaagtgaagatcc  23572800                                           --------->ZAT14      ---------->DOF2                      <---------ZAT14 ----------->RAV1(2)                  --------->WRKY38(1) --------->At4g35610                  --------->WRKY12        --------->ANAC58 --------HVH21                      <-------GAMYB   --------->ANAC58 ---->WOX13(1)                     <---------DEAR3(2)    --------->DEAR3(1) --TEIL                            <---------MYB46(3)    ----------->HVH21 ->ARR14(2)                       <---------DEAR3(1)--------->ANAC58                           ------ ->ARR11(3)                  ---------->DOF2     --------->ARR14(2)                            ------ --ARR14(2)            --------->ALFIN1<---------WRKY18(1)------>NtERF2                        <----- --ARR11(3) --------->At4g35610--------->DAG2  <---------YAB1 --------->ANAC58             <------ZmHOX2a(1) --------ALFIN1--------->At4g35610<---------RAP2.6(2)   --------->DEAR3(2)            --------->ALFIN1   atcacctgtaaagcagaagcagaagttgtggcaaaggcggttgactgttctgatacgctccgacgagcaaaatcggagttgatagaaggtgaaggagtat  23572900                                  --------->GLK1(2)         <------ZmHOX2a(1)        --------->ARR14(2)       <---------TOE2(3)     --------->ANAC58                                                     <--  --------->ARR14(2)         --------->ANAC46                                                     ---  <---------ARR14(2)         --------->ANAC58                                       <---------ANAC58 --->KAN4(2)        ---------->DOF2   <-----------HVH21      --------->At4g35610    <---------ANAC58 --->ARR14(2) <---------At4g35610 <---------ARR14(2)       <-----------RAV1(2)--------->AHL20(1)  <-- ----ARR14(2) --------->At4g35610--------->WOX13(1) <-------GAMYB             --------->ARR11(3)-----   tcccaatctgaggatgagcagagaaagcttcaagccaatctgtcacattaacttggttgaaccagatgtctcttgcagtatatattgcttcttgagaagt  23573000                                           --------->ANAC46                                    --------->ZAT2   ------>MYB83                                    <---------ZAT2   ------>MYB46(1)                                    --------->HSFB2a(1)                                    <---------HSFB2a(1)                                    <---------HSFC1(2)                                    --------->At4g35610     <---------HSFB2a(2)       <---------------------WRI1     <-----------RAV1(2)     <---------ARR14(2)   <---------HSFB2a(1)     --------->HSFB2a(2)     --------->ARR14(2)   --------->HSFB2a(1)   ------>ZmHOX2a(2) ------->GAMYB           --------->HSFB2a(2) <---------At4g35610       --------->GLK1(1) -------DOF5.7(2)        <---------HSFB2a(2) --------->At4g35610       <------ZmHOX2a(2)          <-- ------>MYB52(1)    --------->At4g35610  <---------ALFIN1             <---------ARR14(2)      <------ ---------GT1    <---------At4g35610--------->HSFC1(2)                --------->ARR14(2) <-----------GT1 ---->DOF5.7(2)  --------->At4g35610<---------At4g35610    --------->YAB1              <-----------GT1   taacggtccagacgtagacatctgcttcgcgaattcggagcttccacagcaaaccttccattcatcttctccgatctccatcgccattttttctctcttt  23573100                  <---------WRKY18(1)                 --------->WRKY12                 --------->WRKY38(1)        <---------ALFIN1       *TSS    <---------At4g35610       ===============================HOX2a_HOX2a       ------>ZmHOX2a(1)                     <------------CBF    <---------ATHB12           <------ZmHOX2a(2)   --------->ARR14(2)         --------->ARR11(3)         --------->YAB1                     <--------   <---------ARR14(2)   <---------REM1(1)<---------At4g35610                             <----------DOF2 ---------GT1  <-------GAMYB  <---------ARR11(3)     <----------DOF2                <----------DOF2 ----DOF2     <-----------RAV1(1) ---------->DOF2   <---------DAG2  <----------DOF2<---------DAG2   tctccaatcctcacttctgttgactggtgtaagatcaaaagtcatctaattgggccttttcataaacgggcttttcaaaaatgggccttttctttatctt  23573200                                                                                       <---------TOE2(3)                                                                                   <----------DOF2                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                       ---------->DOF2 <---------TOE1(3)                                                             <-----------GT1 --------->ARR11(3)                                                           <---------ANAC58  --------->AGP1                                                           <---------ANAC58  <---------ARR11(3)                                                       --------->HSFB2a(1)   --------->ARR14(2)       <---------AHL20(2)                              --------->HSFC1(2)    <---------ARR14(2)  <----------DOF2                     *TSS             <---------HSFB2a(1)  --------->GLK1(1)   <---- -ARR11(3)  --------->YAB1       -------->ATHB1        <---------HSFC1(2)   <---------GLK1(1)   <----   cttcctttttttattcatcatcttctatatgtgaattattcagaaacagaagcgagaagtttcttacaatttgtaaagagatctgttttagggttttgcc  23573300                                                                                                    <                                                                                                    -                                                                                                    <           <------NtERF2                                            <------ZmHOX2a(2)               -          --------->LBD16                                    <---------ZAT2                         <         <---------ANAC46        --------->CCA1(2)           --------->O2                           -         <---------ANAC58       <---------ARR14(2)    --------->GLK1(1)              --------->WOX13(1)         <---------ANAC58       --------->ARR14(2)    <---------GLK1(1)            <---------ATHB12 -        <---------------------WRI1      ---------->DOF2      <---------O2============================        <---------LBD16      <-----------------AG    <---------ARR14(2)  <------ZmHOX2a(1)          <    <-----------RAV1(1)      ----------------->AGL1  --------->ARR14(2)  ============================ -----ANAC58               --------->DEAR3(1)       =======================HOX2a_HOX2a <---------ATHB12 -----ANAC58       ---------->DOF2  <---------LBD16 <------ZmHOX2a(1) <---------HSFB2a(2)  <---------   ttgttcttgtggcgggaataacaaagacatcgccgatatggggaaagacgaagaggaaatgcgaggtgagatcgaggagcgactaatcaatgaagagtac  23573400         >>>>>>>>>TBF1   <---------HSFB2a(2)   --------->HSFB2a(2)  ------>ZmHOX2a(2)  ==============================HOX2a_HOX2a ===============================HOX2a_HOX2a <------ZmHOX2a(2) --------->CCA1(2) ---------ARR14(3)                             --------->ANAC58 -------->ARR14(3)                      <---------YAB1                                             <- ---------ARR11(3)                    <---------ICU4                                               -- -------->ARR11(3)               ------>ZmHOX2a(2)                                                 <- ---------ARR14(2)              <------ZmHOX2a(2)                                                  -- -------->ARR14(2)       ==============HOX2a_HOX2a                                    ------>ZmHOX2a(1) -------->AGP1           ------>ZmHOX2a(1)     --------->ANAC58                     ----------->RAV1(2) =======HOX2a_HOX2a      ===============HOX2a_HOX2a                              <---------ANAC58 --- ---------AGP1--------->ZAT6   <---------ARR11(3)                      <---------ZAT6 ----------->HVH21 ========HOX2a_HOX2a<----------DOF2----------->GT1        <---------ZAT18        <---------ANAC58<--- ------AtSPL8--------->ZAT14   --------->ARR11(3)         --------->ZAT18   <---------AtLEC2 --------   aagatctggaagaagaacactcctttcctctacgatctcgttattactcacgctctcgagtggccttcacttactgttgaatggcttcctgaccgtgaag  23573500        ---------->DOF2     --------->LBD16    --------->HSFB2a(2)    <---------HSFB2a(2)   <---------LBD16  ------>MYB83  --------->MYB52(1)  ------>MYB46(1) --------HSFB2a(1)                                   --------->LBD16 ------->HSFB2a(1)                               --------->TOE2(2)    <---------ANAC58 --------HSFC1(2)                    --------------->AtSPL8           --------->ANAC55(2)        ---- ------->HSFC1(2)               <---------GLK1(2)--------->TOE1(2)    <---------ANAC55(2)  <---------At4g35610 ---->TEIL                    <---------YAB1  <---------ALFIN1        <---------ANAC58     --------->At4g35610 ------ARR14(2)          <---------At4g35610  <---------CCA1(2)    <---------ATHB12        --------->ZAT2 ->REM1(2)           <---------MYB52(1)<---------SPL7--------->HSFB2a(2)                   <---------ZAT2   aaccttccggtaaagactactccgttcagaagatgattctcggtacccatacctccgagagcgagcccaattacttgatgctagcccaagttcagcttcc  23573600                                                          <----------DOF2                                  <---------ICU4         <---------ANAC46                                  --------->YAB1         <---------ANAC58                                 --------->ICU4          <---------ANAC58                <---------AHL20(2)                              <---------TOE1(1)       <---------RAP2.6(2)        <-------TEIL                              <---------TOE2(1)     <------MYB83               --------->TOE1(2)     <---------ARR14(2)      --------->SPL7         <------MYB46(1)          --------->DAG2 <-------- -->ZmHOX2a(1)         <-----------HVH21 <---------ZAT14<------NtERF2      ---------->DOF2<---------AHL20(2)   tcttgacgataccgagagtgaagctcgtcagtacgatgatgaccgctctgaatttggtggctttggctgtgcaactggaaaggtgcgattttttattttt  23573700  Previous    Next  AGI:  At5g58220.1    Description:  TTL (TRANSTHYRETIN-LIKE PROTEIN); steroid binding. Identical to Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5- ureidoimidazoline decarboxylase (TTL) [Arabidopsis Thaliana] (GB:Q9LVM5;GB:Q2V2X6;GB:Q2V2X7); similar to unnamed protein product [Vitis vinifera] (GB:CAO23132.1); contains InterPro domain Uncharacterised conserved protein UCP037178, transthyretin (InterPro:IPR017129); contains InterPro domain Transthyretin; (InterPro:IPR000895) Range:  from: 23571622    to: 23573107    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g58230.1    Description:  MSI1 (MULTICOPY SUPRESSOR OF IRA1). Identical to WD-40 repeat-containing protein MSI1 (MSI1) [Arabidopsis Thaliana] (GB:O22467); similar to MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) [Arabidopsis thaliana] (TAIR:AT2G16780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60819.1); similar to WD-40 repeat-containing protein MSI1 (GB:O22466); similar to unknown [Populus trichocarpa] (GB:ABK95832.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 23573238    to: 23575471    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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