Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          --------->AHL20(2)                                         <---------ATHB12                                       --------->WOX13(1)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <---------ATHB12                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    --------->ANAC58                                    --------->ANAC58                                                <                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <                                   --------->WOX13(1)                                         <------                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <------                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        -------                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                        -------         --------->ATHB12        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        -------      --------------------->WRI1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <-------    <-------TEIL                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------YAB1    ------->TEIL            <---------------------WRI1                              <---------AHL20(2) ---------------AtSPL8<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         --------->AHL20(2) ---------TOE2(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ---------->DOF2   --------->ARR11(3) - -----DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ---------->DOF2         <---------ARR11(3) <   ttaatgtacattgattgtatcgactctcatttcgatgcaatcaatgaattaggcgttacaaaagaaaaagaatacaaactcaagattttataatcgaatc  23563200 ---------ARR14(2)               ----------->GT1 ---------GLK1(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---ARR11(1)               --------->RAP2.6(3) ---ARR14(2)              --------->MYB52(1)                                     <---------------AtSPL8 >TEIL                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC58 -->GLK1(2)            <---------ANAC58<---------ARR11(3)          --------->ANAC55(2) -->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------ANAC58  <---------ZAT14 --ARR14(1)     <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)----------->HVH21 -------->ARR14(2)     <---------ANAC58--------->ARR11(3)        <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i) ---------ARR11(3)     --------->ANAC55(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->ZAT14   tagatactctataacattctaattttcgtaacggctagtaaaatctaaacagtctaaatattcaaattttcgtgacaaatagtcgagtacagacactcta  23563300                                             <---------AHL20(2)                                             --------->AHL20(2)                                            <---------AHL20(1)                                            --------->AHL20(2)                                        <---------YAB1                                      --------->YAB1           <---------MYB46(3)                    <------ZmHOX2a(2)<---------YAB1       <---------ZAT14              --------->MYB52(1)------->TEIL<---------AHL20(2) ----------->GT1           <---------ANAC58     <---------ARR11(1)        --------->ZAT14           --------->ANAC55(2)  --------->GLK1(2)     --------->AtMYB61           <---------ANAC58    <---------CCA1(2)     --------->MYB46(3)      <----------DOF2   aacattcaaattttcgtaacggatcaaagactcgaatctatgataatttaattcaacctctgcattggttacaaatgttcttttgaatttttgtcttaag  23563400                                  --------->ARR14(2)        =========================================                                  --------->GLK1(2)         <-----------------AGL3                  -                                  <---------ARR14(2)   <---------------AtSPL3                  <-----                            --------->ZAT14    --------->DAG2<---------ZAT6           <------------CBF         <----------DOF2    <---------ZAT18   ---------->DOF2----------->GT1        <---------YAB1---   ----------->GT1  ---------->DOF2       >>>>>>>>>TBF1<---------------AtSPL8       <---------TOE2(3)   gggaattgtgactttgtgagaaaaaagcattgcacaaatctgaagaagaaaagtggtatggtacagttaatgggactactactactaacattgaaaaacg  23563500                                                                              --------->At4g35610                                                                          ------------>AtMYB77                                                                         --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                      --------->ZAT18                                                                     --------->TCP23                                                                     --------->TCP16(2)                                                                     --------->TCP15(2)                       ---------->DOF2                              <---------TCP15(1)                   <----------DOF2                                  <---------TCP20                   <---------------AGL15                            <---------TCP16(1)             ------>MYB46(1)                           *TSS --------->YAB1----------->RAV1(1)             --------->MYB52(1)                   <---------ANAC58  <---------TCP11(2)           --------->AtMYB61                     ---------->ID1     --------->PCF2 ==================================MADS_MADS--------->AHL20(1)      <---------PCF5 -------->DAG2     --------------->AGL15    <---------AHL20(1) --------->MYB52(1)                   < -----ID1  <---------MYB59      --------->ARR14(2)<---------ANAC46 <-----------TCP11(1)          <--- ------->DOF2------>MYB83       <---------ARR14(2)<---------ANAC58------->GAMYB              --------   aaaaggctcaaaaccaaaccgctttaaaaggaaggaacctctctaatatttttcgtattaactcataacgggcccacaacagttgcaatagtctttcaaa  23563600                                                              =========================HOX2a_HOX2a                                                              ------>ZmHOX2a(2)                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                            ------->TEIL                                                     ===============HOX2a_HOX2a                                                <------ZmHOX2a(2)                                                --------->GLK1(1)                                               --------->AGP1<------ZmHOX2a(2)                                               --------->ARR11(3)                                               <---------ARR11(3)                                               <---------AGP1==========================HOX2a_HOX2a                                               <---------ARR14(2)                                               --------->ARR14(3)                                               <-----------ARR10                                               --------->ARR14(2)                                              <---------CCA1(2)                                   <--    ------>ZmHOX2a(1)           ------>ZmHOX2a(2)    ================HOX2a_HOX2a               ------    ===================================HOX2a_HOX2a   ------>ZmHOX2a(1)          ------>ZmHOX2a(1) <--    ==================================HOX2a_HOX2a------>ZmHOX2a(2)             --------->TOE2(3)  --- -----------GT1                 ============================HOX2a_HOX2a   <<<<<<<<<TBF1   <---------ZAT18 ------GLK1(2)                 <------ZmHOX2a(2)<---------GLK1(1)  <----------DOF2       --------->ANAC46 ->YAB1                        =============================HOX2a_HOX2a<<<<<<<<<TBF1    --------->At4g35610   attctcctctctaatctcacaaaaacctctccgatctctcgctctctcagatctcctccatggatcccgcttcttcttcttcctcaaatcagcgcaaccg  23563700                                             <---------CCA1(2)              <---------ALFIN1              --------->ARR14(2)             <---------ZAT14                <---------ARR11(1)             <---------ZAT18                <---------ARR14(2)             --------->ZAT18                ------->TEIL             --------->ZAT14                <-----------ARR10         --------->HSFB2a(2)             <---------ANAC58  <---------CCA1(2)                      <---------ANAC58                 <---------ALFIN1 -------ARR14(2)           <---------ALFIN1<---------ARR14(1)       <---------ARR14(2) ->GAMYB <---------HSFB2a(2)         <----------DOF2                --------->ARR14(2)<---------ALFIN1 ---------ARR10           --------->ANAC46 <---------CCA1(2)--------->AtLEC2     ------->TEIL     <-- ------>ARR14(2)   <----------DOF2<-----------GT1      ------>ZmHOX2a(2) --------->LBD16      <<<<<<<ZML2   aatcgtctcttctggtacactcttttccccctcatttttcttttcgtatctcttcgatctccatgaacaaaatcccccaattgaacccaaaccctagaac  23563800                                                                                               ------                                      --------->CCA1(2)                                    ----------                                     --------->ARR14(2)                                  --------->SPL7                                     <---------ARR14(2)                               <---------ANAC58                                     --------->ARR11(3)                               <---------ANAC58                                     <---------ARR11(3)                               <---------ANAC46         <---------MYB52(1)        ----------->ARR10                  ----------->HVH21 <------NtERF2       <---------MYB46(3)     ----------->TGA1               ---------->DOF2     <---------ICU4------ -------YAB1                  ----------->HVH21        <-----------RAV1(2)  <---------ANAC46   <-----   attatagagccgttgatgttctgtttctacttctgacgagatatgttgacttctctcgcaggggaaagaccagtgatggctgataatggcgtccaacagg  23563900  --------->AHL20(2)                              --------->MYB46(3)  <---------AHL20(2)                       ----------->GT1  <---------TOE2(2) --------->AHL20(2)                       <---------YAB1    <---------TOE1(2)               --------- <---------AHL20(1)                     -------->ATHB1     ------>ZmHOX2a(1)           <---------ALFIN1 <---------AHL20(2)                     <---------ICU4--------->AtMYB61                --------->AtMYB61 --->ANAC55(2)           <<<<<<<<<TBF1  --------->ATHB12  --------->TOE2(2)           --------->MYB46(3) ->RAV1(1)            <<<<<<<<<TBF1     --------->ATHB51------>MYB46(1)          <----------DOF2 ----->GT1         <<<<<<<<<TBF1       --------->ICU4 <---------ALFIN1  <---------ANAC58    <-------- ----ANAC55(2)  <<<<<<<<<TBF1          <---------ATHB51 ------>MYB83    <---------ANAC58----------->RAV1(1)   taatttaattcaatcttcttcttcttcttcttctattttgaattattgtaaaaccaccatcctaggtttaaaatgcgttgttcctttcaccaccagcagg  23564000                                                             ------>ZmHOX2a(1)   <---------TOE2(3)                                                   --------->ARR14(2)           <-----------GT1                                                   <---------ARR14(2)        --------->YAB1                                                 <---------MYB46(3)         <---------YAB1                                               --------->LBD16           ------>ZmHOX2a(1)                                              <---------ANAC58       <---------ALFIN1                                              <---------ANAC46      <---------At4g35610                                              <---------ANAC58   ------>ZmHOX2a(2)                --- >ZAT2                                        <---------ANAC55(1)===============HOX2a_HOX2a       --- -ZAT2                                  --------->ARR11(3) ----------->RAV1(2)<---------AHL20(2)  ---   tttctcacgacgatggaaggaacattgtttcttcgtcttatagttcttccgtggttccttctcctgatcccgctccttattataacgttcttcaaacccc  23564100  Previous    Next  AGI:  At5g58190.1    Description:  ECT10. similar to ECT5 [Arabidopsis thaliana] (TAIR:AT3G13060.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66551.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 23563555    to: 23566831    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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