Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ----------->RAV1(1)                                                              --------->ANAC58        --------->ANAC46                                   <---------ZAT14 <---------HSFB2a(2)                --------->REM1(1)                       --------->TOE1(2)           --------->HSFB2a(2)               ------>MYB83                       --------->TOE2(2)      --------->At4g35610                    -------->P                      ----------->RAV1(2)     <---------ZAT2  --------->ANAC58       ------>MYB46(1)           <----------DOF2       <---------------AtSPL3  --------->YAB1   ---------->DOF2         <---------At4g35610    >>>>>>>>>ARR2 --------->ZAT2---------->DOF2  <---------At4g35610<----         --------->At4g35610  <---------YAB1  <---------GLK1(1)          --------->WRKY18(1)    ----- --------DOF2        -------->P--------->ATHB12    --------->LBD16      <-----------HVH21       <----   ctttcaagttcagctatattgtcaacctgggtttgattgtactgaacgagctccgagaataagaaagcaaatgcggtcaagctcacctacaacacaagta  23505400                          <---------GLK1(2)                          --------->ARR14(2)                          <---------ARR14(2)                    --------->YAB1                   <---------ATHB12                  ------>MYB83                  ------>MYB46(1)                 --------->WOX13(1)               --------->MYB46(3)       <---------KAN4(2)                 <------ZmHOX2a(2)              -------->P <---------At4g35610                             --------->ARR11(3)   --------->HSFB2a(2)   --------->At4g35610 --------->YAB1 ---------->DOF2   <---------HSFB2a(2)--------->At4g35610 --------->YAB1  <------ZmHOX2a(2) -----ZAT14  --------->MYB52(1)--------->ANAC58    ---------->DOF2       <---------ARR11(3) ---->ZAT14<---------MYB52(2)  --------->ANAC58    --------->YAB1  >>>>>>>>>TBF1         --------->CCA1(2) ---TEIL<----------ID1<---------At4g35610 <---------ICU4 <---------ARR11(3)        --------->LBD16   cagttccaaaacgactaaccaatcagcagatgctcgaaatcgaatgatcacaataaagagatcaaagaagaagaagatcaaaacccgagagatttgaaat  23505500                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         <---------ARR14(2)                         --------->ARR14(2)                     ------>ZmHOX2a(2)                     <---------LBD16                    --------->ARR14(1)                   --------->AGP1                   --------->ARR11(1)                                                       ---------                   --------->ARR14(2)                                                     <----------                 ----------->ARR10                                     ---------->DOF2--------->HSFB2a(1)       --------->ANAC46--------->LBD16                             <---------ZAT6     <---------HSFB2a(1) --------->HSFC1(2)--------->ARR11(3)                            <---------ANAC46   ---------->DOF2 <---------HSFC1(2)<---------ARR14(2)                          <---------ZAT14     <------ZmHOX2a(1) --------->HSFB2a(1)<------ZmHOX2a(2)                          --------->ZAT14   <---------TOE2(3) <---------HSFB2a(1)--------->CCA1(2)                <---------------AGL15  --------->GLK1(2)   cgaaccctcccacaactattagatccggatccaaattgaacaatgttctcaatttccatacttagttcagtgtaaaagtttctgaggaaagctccgaaat  23505600                  --------->ANAC46               ------>ZmHOX2a(2)              <---------GLK1(1)             <-----------ARR10             <---------AGP1 --------------->AtSPL8             <---------ARR14(2)                  <---------At4g35610                          <------             --------->ARR14(2)         <---------ANAC58                                      ------>NtERF2             --------->ARR11(3)         <---------ANAC58           <------ZmHOX2a(1)         --------          --------->ALFIN1  --------------->AtSPL3        <---------ANAC58                   --------      ---------->DOF2       <---------------AtSPL3        <---------ANAC58<---------------AtSPL3 >LBD16--------->DAG2     <---------ARR14(2)     --------->At4g35610      <---------------AtSPL8 -------AGL1 <---------ARR11(3) ------->TEIL  <----------DOF2<-----------HVH21              ---------   tggaagagaaaagtggatctacgtagcgaaaacgtacctcttgcttgcctttgctgagaggcttgtcaaggacgttggagtactgtttcattttcccgac  23505700                                                  --------->TOE1(3)                                                  --------->TOE2(3)                                         --------->ARR14(2)      <---------GLK1(2)                  <---------ARR14(2)                             --------->ARR14(2)   --------->YAB1                     --------->HSFB2a(2)                               --------->GLK1(2)  <------ZmHOX2a(2)                   <---------HSFB2a(2)      --------->HSFB2a(1)      <---------ARR14(2) ---ALFIN1                      --------->At4g35610       --------->ANAC46       ----------->HVH21  < ->LBD16                        --------->ZAT2 --------->ARR14(2)            <---------LBD16       <- ->ANAC46            --------->LBD16 ----------------->AGL1    <---------HSFB2a(1)     <---------GLK1(2) >HSFB2a(2)        <---------LBD16   ----------------->AGL2  <---------GLK1(2) --------->LBD16     <-   tccgatcatattcttcggttttccggtgagaacgagcttcccagaaccagaaccctaaacacagaacctttcttagttttccggtgaaagaatctgaaga  23505800                                                                                         <----------DOF2                                                                                      <-----------GT1                                                                                   <---------ICU4                                                                               <---------AHL20(2)                                                                               --------->AHL20(2)              -------->P                <---------------AtSPL8<-----------GT1--------->TOE2(3)------- ----------DOF2                         --------------->AtSPL8<---------AHL20(2)<---------AHL20(2) --------ANAC58           <----------DOF2     *TSS---------->DOF2            --------->YAB1   <------ --------ANAC58----------->RAV1(2)     ---------->DOF2----------->GT1      <---------YAB1<---------DAG2   tgcttttgtttattgcaacctggtttgtcttttggttcgatgaaagtacaaaaaaagagtttatttacatttttgttaatattaatttttactttttcac  23505900             ----------->GT1     <------------CBF   --------------->AGL15   ------>ZmHOX2a(1)   <---------------AGL15   <---------YAB1          --------->At5g28300 ----------------->AG    ----------->GT1 --------->YAB1      ---------->DOF2    ----------->TBP         ---------->DOF2 -->ZAT6    <--------P--------->DAG2    --------->AHL20(2) --------->YAB1 -----GT1 <---------ANAC46----------->GT1                 <---------YAB1  *TSS                   ----   taatcctaattggggtagaaaaaaaaaggggtaaataagtgtataaataagaccctagcgatgataaaaagaagccgagacttgttgagaagaagccctt  23506000                                                            <<<<<<<<<TBF1                                                         <<<<<<<<<TBF1                                                     <---------MYB52(1)                                                     --------->ARR14(2)                                                   <---------MYB46(3)                                             --------->ARR14(2)      ------>ZmHOX2a(1)           <---       --------->DEAR3(1)        <---------At4g35610 <---------ARR14(2)                         =====     <---------At5g28300         --------->At4g35610<---------RAP2.6(3)        --------->ZAT14  <---- ------>DOF2           <----------DOF2       <---------ARR14(2)<<<<<<<<<TBF1  <----------DOF2   =====   aaagcttcaccgtctctctctctctctttctcgtgagcttcaattcgaatcggccgttcttcttcttcttcctccaatctctttactccaatggaagagg  23506100                                                                         ------>ZmHOX2a(1)              ------>ZmHOX2a(2)                                       ------>NtERF2            <---------ARR11(3)                                       <---------ALFIN1            --------->AGP1                                         ------>NtERF2<---------ALFIN1            --------->ARR11(3)                                     <---------ATERF1(1)            <---------ARR14(2)                     <---------MYB52(1)--------->DEAR3(1)            --------->ARR14(2)                    <-------GAMYB   --------->ANAC46           <---------GLK1(1)                   ------>MYB46(1)    <---------ALFIN1           --------->GLK1(1)                   ------>MYB83       --------->DEAR3(1)                - ------------------WRI1 <---------TOE1(2)    --------->AtMYB61  ------>ZmHOX2a(1)              ------ ===================HOX2a_HOX2a              ------->GAMYB      <---------ATERF1(1)            ------ --ZmHOX2a(1)<------ZmHOX2a(2)              --------->MYB46(3) <---------ALFIN1------>ZmHOX2a(1)  <-- ====================HOX2a_HOX2a          <-----------GT1   <---------ALFIN1   ======================   acgatgagttcggagatctatattccgacgttctccagccgtttcaacctcccgttgttctccctcctccgcctcctcttcctcaccgttcaatcgacct  23506200       <------ZmHOX2a(2)      <---------ARR14(2)                                                 --------->At5g28300      --------->ARR14(2)                                                 --------->LBD16 --------->TOE2(2)                      --------->ZAT2                   <---------RAP2.6(3) --------->TOE1(2)                      <---------ZAT2                  ----------->GT1 ------->GAMYB                          <---------At4g35610             <---------ANAC55(2) -------->MYB46(3)  <---------ARR11(3)  --------->At4g35610             <---------ANAC46       ------ --->TOE2(3)   <------ZmHOX2a(2)  ------>MYB83                        ------>NtERF2          -------- --->AtMYB61  --------->ARR11(3)  ------>MYB46(1)              <---------WRKY12              -------- -------ALFIN1<---------ARR11(3)--------->TOE2(3)              <---------WRKY38(1)         <------ZmHOX2a(1) =============HOX2a_HOX2a       <---------MYB59            <---------ANAC46      <-----------GT1   caacctccgatcccaagatcaagatgtctcagaacctaattcagctccaatctctagggtttcggacaacgatgccgtaaaattatctactcaggacgcg  23506300  Previous    Next  AGI:  At5g58030.1    Description:  transport protein particle (TRAPP) component Bet3 family protein. similar to unknown [Populus trichocarpa] (GB:ABK93439.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66681.1); contains InterPro domain TRAPP I complex, Trs31 (InterPro:IPR016696); contains InterPro domain Transport protein particle (TRAPP) component, Bet3 (InterPro:IPR007194) Range:  from: 23504003    to: 23505846    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g58040.1    Description:  ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]); RNA binding / protein binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66680.1); contains InterPro domain Fip1 (InterPro:IPR007854) Range:  from: 23505974    to: 23511226    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version