Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ZAT18                      <-                                                         <------ZmHOX2a(1)                         ==                                                  --------->CCA1(2)                                --                                                 <---------ARR14(2)                                <-    --------------->AtSPL3                       --------->ARR11(3)                              <---    --------------->AtSPL8                       --------->ARR14(2)      --------->GLK1(1)       ----   --------->At4g35610              --------->CCA1(2)  <---------------------WRI1                ----   <---------At4g35610 --------->YAB1           <------ZmHOX2a(1)        <---------GLK1(1)      <----   ttctaagctgtacaaaaccatacaatcagaaacacaagataagagaagaaggatatggaggaagtgaacaatgagataccctctcagcgatactgtgagg  23501700     <---------ANAC58     <---------ANAC58     <---------ANAC46    <------NtERF2   <---------MYB46(3)                                          --------->ETT(2)   ------>NtERF2                                               <---------WRKY38(1) --------DEAR3(1)                                         <-------PIF5    <---------ANAC46 =======================HOX2a_HOX2a                       ------->PIF5    <---------ANAC58 ---->ZmHOX2a(2)                               <-----------RAV1(2)        <---------ANAC58 --------MYB46(3)                            ----------->RAV1(1)        ------->TEIL ------ARR14(2)                  <---------ANAC58   <-------TEIL <---------REM1(2) ----->ARR14(2)                  <---------ANAC58   --------->ZAT18   <---------ZAT14 ----->GLK1(2)   ------>ZmHOX2a(1)          --------->MYB46(3) <---------ETT(2)                    -- --ZmHOX2a(1)  ----------->RAV1(2)<----------DOF2   <---------ZAT18   --------->ZAT14<-----------GT1   atcggtggcttggcctctcctggctcgaactcttggcttttgacgaacaacaggtgcgctcgtggtcgacactgtaccttgtggctgtaacccttcttgg  23501800                      ----------->RAV1(2)                 ----------->HVH21                 ------>ZmHOX2a(1)                          <------ZmHOX2a(2)                      <-     <-----------RAV1(1)------>ZmHOX2a(1)     ----------->RAV1(1)                                 ---     =============================RAV        --------->MYB46(3)                             <--------     ======================RAV    --------->ANAC58        <------ZmHOX2a(1)    <---------AtMYB61  <-- ------>P      ----------->RAV1(2)--------->ANAC58    ---------->DOF2  --------->TOE2(3) <---------YAB1   ctacccattgttggacctcctgactcctgcattgacaaacaacaacaacaacacagaaaaggatcagaaacattcttagttttggtgagttatgatgtaa  23501900                                                                                              =======                                                     ------>NtERF2                          ---------                                                 --------->DEAR3(1)                        ==========                                                 <---------WRKY12                          ==========                                                 <---------ETT(2)                        --------->ALFIN1                                                <------NtERF2<---------ANAC58           =============                                                --------->ATERF1(1)                     <------ZmHOX2a(1)                                               <---------ATERF1(1)                      =============                                              <---------ANAC58                        --------->ALFIN1                                              <---------ANAC46                       ================                                              <---------ANAC58                       ================                                              <---------DEAR3(1)                     xxxxxxxxxxxxxxxx                                             <------NtERF2   <---------ANAC58        <------ZmHOX2a(1)                                             <---------ABI4(1)                     --------->ALFIN1                                             --------->ATERF1(1)                  --------->ATERF1(1)                                            <---------ATERF1(1)                  --------->LBD16                                           <---------DEAR3(1)<---------ANAC46   <---------ANAC58                                  --------->ETT(1) --------->ATERF1(1)          <---------ANAC58 <---                                  <---------LBD16<---------DEAR3(1)             <---------ANAC46 ====                                  <---------DEAR3(1)<---------DEAR3(1)          <---------DEAR3(1) --------YAB1         --------->ATHB12     <---------RAP2.3(3)                 <---------LBD16======= ------>ARR11(3)     <---------YAB1<---------LBD16<---------ATERF1(1)      <-----------RAV1(1)<------ZmHOX2a(1) -REM1(1)    ----------->RAV1(2)<-----------HVH21----------->HVH21        --------->GLK1(2)<------ZmHOX2a(1) -------ARR11(3)   <------ZmHOX2a(1)<------NtERF2--------->ETT(2)  ---------->DOF2<------NtERF2  ====   gataatagttttggtacctgaggatgatggaactggtcggggaagggggcgtcgacggctagagcgtggaaaagagattgtggcggaggaggaggaggag  23502000         ===========================HOX2a_HOX2a         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------ARR14(2)       ------->TEIL       --------->ARR14(2)  --------->CCA1(2) ===============HOX2a_HOX2a >ALFIN1============================HOX2a_HOX2a ===============HOX2a_HOX2a ==============HOX2a_HOX2a ==============HOX2a_HOX2a ===============HOX2a_HOX2a ===============HOX2a_HOX2a ==============HOX2a_HOX2a >smallRNA(se3) ---ZmHOX2a(1)                                    <---------TOE2(3)                  <---------DAG2 ==============HOX2a_HOX2a                        --------->ANAC58               <-----------GT1 ==============HOX2a_HOX2a           ----------->HVH21                     <---------YAB1 ===============HOX2a_HOX2a  <------ZmHOX2a(1)    --------->ANAC58  <---------AtMYB61<----------DOF2   gaagagatggatcccaacaaggagggagagaggagagcattgacatggaatcaaggaagaagtcattgttttggtttatgaattctccttttccttctcc  23502100                                                                                          <---------AHL20(2)                                                                          <---------AHL20(2)       <-                                                                          --------->AHL20(2)  -------                <------------------------ANAC81                  <----------DOF2          --------->AHL20(2)           <---------CCA1(2)            ------>ZmHOX2a(1)  <---------YAB1--------->AHL20(2)   <------   atttccattttccatctcttcttctcttcttctggtttcttcctctgttccctcccctgtttttattcttttcaaaaaaatttgatttctatttttttaa  23502200                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                --------->HSFB2a(1)               ---                                                               --------->ARR14(2)                <---                                                               --------->GLK1(2)                 ----                                                               <---------ARR11(1)              <-----                                                               <---------ARR14(2)             -------                                                               ------->TEIL                  --------                                                     --------->ANAC55(2)                     <-------                                                     <---------ANAC55(2)                   <---------SPL7        <---------MYB52(1)             --------->AHL20(2)     <---------ARR14(1)         <----------- ----------GT1         --------->YAB1  --------->AHL20(1)     <---------CCA1(2)          <----------- -->AHL20(2)        <----------DOF2    <---------AHL20(1)  --------->HSFB2a(2)           ------------ ---AHL20(2)     ---------->ID1       <---------AHL20(2)--------->ARR11(3)           ---------->DOF2-   tttactggccgtttcatttgttctttcattactcccataaatattttagaatattaagtatctcgaatctttcacatattatctcacaaaagtcgtacgt  23502300  <------NtERF2 ------>NtERF2 <---------ATERF1(1) --------->ORA47(1) -------->ATERF1(2) ---------ATERF1(2) ------->ATERF1(1) -----NtERF2 ------->DEAR4(2) -------RAP2.3(1) -------ATERF1(1) --->NtERF2 ------DEAR3(1) ----->DEAR3(1)                                                           ------------>CBF ------HVH21                                                      --------->GLK1(2) -->ANAC46                                                        <---------ARR11(1) ->SPL7<----------DOF2                                            --------->ARR14(2) --TOE1(2)                                  --------->ARR11(3)    <---------ARR14(2)              <-- ----AtSPL3    <------------CBF             <---------ARR11(3)    ------->TEIL                  ----- ----AtSPL8  <---------YAB1             ------>ZmHOX2a(1)        <---------ARR14(1)   <-----------GT1 --->AtSPL3  <---------AHL20(2)        --------->TOE2(3)   --------->AHL20(2)      <---------ICU4 --- -------->DEAR3(1)                   <---------YAB1        <---------AHL20(2)--------->ANAC46   <----   cgccggcctctttgtataattgtttttgttcttaaaattatcctaaaatctaattctctaattaatcgaatctgtatacaatccatttttacatttttct  23502400       <-----------GT1   --------->AHL20(2)   <---------AHL20(2)                                         <---------AHL20(2)  <---------AHL20(1)                                      --------->YAB1                      <------  --------->AHL20(1)                                      ----------->GT1              --------->YAB1  <---------AHL20(2)            <---------AHL20(2)        --------->ATHB12          <-----------GT1  --------->AHL20(2)      --------->YAB1                 --------->ICU4            --------->AHL20(2) -------AHL20(2)   <---------AHL20(2)                    <---------ATHB12          <---------AHL20(2) ---->TOE2(3)  --------->AHL20(2)                 <----------DOF2                 --------->AHL20(2) ------>AHL20(2)   --------->AHL20(2)             ------>ZmHOX2a(1)            <XXXXXXXXXXXXXXXXXXXXMIR864-5P ------DOF2    <---------AHL20(2)              ---------->ID1 --------->AHL20(2)  <---------AHL20(2)   ttaatttatttactgaattttttaattttcatattttataaaacattttgtcctttcgaatgattaaaatgtttccaatttgaatttaatcatattttac  23502500                                                      -------->ATHB1                                                      <---------ICU4                                           --------->YAB1                                          <---------YAB1                                       <---------AHL20(2)                                       --------->AHL20(2)      <---------ZAT14                                       --------->AHL20(1)      --------->ZAT14                                      --------->AHL20(2)     --------->ANAC46                                --------->AHL20(2)    --------->ATHB51                               --------->AHL20(2)    <---------ATHB51                              --        --------->AtLEC2     --------->TOE2(3)       --------->ICU4                          -------- -----GT1           ------------------------>ANAC81  <---------ATHB12                    ---------->DOF2   aaattgttttatgcaaattcaaaaacaaaaacattaaaaaaaaaattatagctcaattattccactacattgtatttgagagaaaacagcccaaagtaaa  23502600  Previous    Next  AGI:  At5g58010.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G24260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75431.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 23500771    to: 23502115    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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