Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ANAC46                                                                 <---------ANAC46                                                         <---------At4g35610                                                         --------->At4g35610                                                         =================RAV                                                         ----------->RAV1(2)            <------NtERF2                                                        ------->TEIL                  --------->ALFIN1                                                  --------->WRKY18(1)    --------->CCA1(2)         --                                              <---------LBD16  <-------GAMYB          <---------DEAR3(1)                                        --------->HSFB2a(1)   ===============================RAV  ---     <---------ANAC46                   <---------HSFC1(2)------->PIF5  <---------ARR14(2)     <-----  ------>ZmHOX2a(1)--------->DEAR3(1)   <---------HSFB2a(1)   <-----------RAV1(1)<-----------RAV1(2) -----HSFB2a(1)   <------NtERF2         --------->HSFC1(2)<-------PIF5  <---------ARR11(3)   <-------GAMYB ---->HSFB2a(1)  ------>NtERF2  --------->At4g35610   --------->MYB46(3)--------->ARR14(2) <------NtERF2 ---ANAC58      <---------ALFIN1<---------At4g35610  --------->ANAC58   --------->ARR11(3)<---------At4g35610 ---ANAC58     --------->ATERF1(1)     ------->TEIL  --------->ANAC58 ----------->ARR10<---------ATERF1(1)   gttcctgatgtgaatgggccaccgatgcagcgagagctacgaagcttctacgggcaagcacctgctgttgtggagatatgtgctcaggctggcgctgttg  23473500                                          --------->TOE1(2)                                      <---------GLK1(1)               <---------MYB46(3)                                   <------MYB46(1)                   <--------P                                   <------MYB83                    <---------MYB46(3)                                 <--------P                --------->ZAT2                                <-------GAMYB              --------->At4g35610       <---------YAB1          --------->MYB55(2)          <---------At4g35610         --------->ARR14(3) --------->RAV1(2)             <---------MYB46(3)    ---------->DOF2<-------GAMYB      <---------ARR11(3) ---->TEIL                    <---------AtMYB61  <---------ZAT6   <---------AtMYB61    --------->ARR11(3) ----REM1(1)          --------->YAB1  --------->GLK1(1)   --------->GLK1(2)            <---------ARR14(3)   tacctgagcattatagagctacaatgagactggaggttggaattccttcgagtgtgaaagaagctgagatggttgtttgatatgtagaagaccttgtaaa  23473600                                               <-----------GT1                                          --------->AHL20(2)                                          <---------ICU4                                          --------->YAB1                 ------>ZmHOX2a(1)     --------->YAB1       <----------DOF2             <---------ARR14(2)   <---------ANAC46       <---------ARR11(3) <------ZmHOX2a(1) -------             <---------ARR11(3)   ----------->GT1     <-----------RAV1(2)  <----------ID1     -------             --------->ARR14(2)<-----------RAV1(1)--------->DEAR3(1)<----------DOF2           -------   cttcttcttgtacaaaatcctccattccaccttgtgttgtataataatatcacagcccaggtctttttgacttttgaaggacaaaaaaaacaatccacgc  23473700        <---------YAB1      --------->YAB1   ------>ZmHOX2a(1)                       <----------DOF2 -->ANAC58                    <---------ANAC58 -->ANAC46            <-----------HVH21   <---------ICU4                    <-----------HVH21       < -->ANAC58   ----------->GT1  <---------ANAC58                <----------DOF2                      <-   taatcctattatcaagggtaaaaatgtcatttgcttcgttttcatcttttctcgttgccattttcttttttttgtctgtgtcaagtcgataccacttgtc  23473800                                                                                             *TSS               <----------DOF2                                                              ---------             ------>MYB46(1)                                                                ---------             ------>MYB83                                       ------->GAMYB           --------->AtLEC2        <-----------GT1                                 ------>ZmHOX2a(1)        --------->ZAT14    <----------DOF2                                    --------->TOE2(3)      <---------ANAC46  <---- --------P  <---------ALFIN1    <-------TEIL ------>ZmHOX2a(1) --------->ANAC46  --------->REM1(2) --------MYB52(1)     <----------DOF2  <---------MYB46(3)    --------->MYB52(1) --------->ALFIN1=====   tggtagctttatacccactttcatctttttcatgttcgtagttgttcctctggttatcctcatcaacgggacccttgaaaccgtgtagccatgtaagcct  23473900                                        <----------DOF2                                 --------->TGA1a                                 <---------O2                                 <---------TGA1a                                 --------->ANAC46                                 ==================bZIP_DOF      ---------->ID1             --------->O2  =========================================bZIP_DOF  <----------DOF2  <---------ANAC58   --------->At4g35610                  <---------DAG2         --- >ANAC58  <----------DOF2      <---------DOF5.7(2)                         <----------DOF2       <--- >ANAC58  =================================bZIP_DOF                    <-----------GT1           <--- ------DOF2        <---------ANAC58   <---------At4g35610        <-------TEIL                    <--- ==========================================bZIP_DOF          <---------TOE2(3) <-----------GT1-------   ttgtctttgtctctttctcttgcttcagcaagttcacgtctgctctatttctaattttgttctaagattcaattctccttttttctatgcgagaaattta  23474000                                                        --------->YAB1                                                   <---------ATHB12  <---------MYB46(3)                       <---------DEAR3(2)  <------MYB46(1)                         <---------DEAR3(1)  <------MYB83                            <---------At1g77200                                       < ------>ATHB12         <---------AHL20(2) <---------DEAR4(1)                 <-----------GT1        < ------YAB1            --------->AHL20(2) --------->ETT(1)             <----------DOF2            --- ------TOE1(3)       <----------DOF2      <---------DREB2C(2)       ---------->ID1               ---- ------TOE2(3) <---------ALFIN1        <-----------RAV1(1)          <-----------GT1        <---------TOE2(3) -->AHL20(2)--------->ZAT6      <-----------GT1  --------->WOX13(1)<-----------GT1     <---------At4g35610   agattggttctctagctctacctctttaaatttgttactatgtgtcggtgtccatcattcatcaaattttttccttttttatccatttgagttgatgtaa  23474100     <---------ANAC58                                                            <---------YAB1     <---------ANAC58                                                     <---------YAB1 -----------RAV1(1)                                                  ----------->GT1           <----- ---------REM1(1)                                             <---------------AGL15    <---------ANAC58 ------>YAB1             <---------ZAT6                       --------------->AGL15    <---------ANAC58 ----->ICU4         <-----------HVH21--------->YAB1          <-----------------AGL3  <-----------GT1   tgatgttgcttcgcttcatactggtcagagttagtctaatcttcattttagcacaacttgacaacttcatatggttatgacttatttttacttgggtctt  23474200                                                  <---------YAB1                                                --------->YAB1                                                -------->HAHB4                                                <---------ICU4                                               --------->ICU4                                               <---------YAB1                                               <---------ATHB12                                          <---------ANAC58                                          <---------ANAC58                                      <---------ANAC58                                      <---------ANAC58                                     <---------At4g35610                <----------DOF2       <---------ANAC55(2)           --------->At4g35610            --------->ZAT14       --------->ANAC55(2)           <---------ZAT2                 <---------ZAT14               --- <---------TOE2(3)                   --------->ZAT2         ---------->DOF2                     <---- -----DOF2       <---------ZAT6     ------->TEIL--------->ATHB12    <---------ZAT18             -----   tcaaaggttaagtattttagtcttattttgggatgatgcagcttgcttaatgattagagtcttaaagctgtgctctttcttcatcgatttgagcaagtga  23474300                                     <------------ATHB5                                     --------->YAB1                                     <---------ICU4                                                 <                                    --------->ICU4                                                  <                                    <---------ATHB12                                                -                                  --------->WOX13(1)                                                <                               --------->ANAC58                                                     -                               --------->ANAC58                                                 -----     --------->HSFB2a(1)       --------->ANAC46   ----------->GT1                        <---------AHL20(2)     <---------HSFB2a(1) <---------ANAC58       ---------->DOF2                          --------->AHL20(2)     <---------HSFC1(2)  <---------ANAC46   --------->ANAC58                      =================== --->ZmHOX2a(2)          <---------ANAC58   --------->ANAC58                      =================== -----ARR11(3)       <---------GLK1(1)      <------NtERF2           <--------P    ------>ZmHOX2a(1) - ---->ARR11(3)       --------->GLK1(1)    <---------ANAC46 <----------DOF2        <----------DOF2 ---   tcttggaaggctcttgagttctgaattccttgtaagcaatcatggcagggaaaagagaaaactttgtgaggttagtgctgcatccttttgttttaataca  23474400  Previous    Next  AGI:  At5g57930.1    Description:  APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2). Identical to APO protein 2, chloroplast precursor (APO2) [Arabidopsis Thaliana] (GB:Q8W4A5;GB:Q94JR8;GB:Q9FJM2); similar to APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) [Arabidopsis thaliana] (TAIR:AT5G61930.1); similar to APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) [Arabidopsis thaliana] (TAIR:AT5G61930.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66666.1); contains InterPro domain Protein of unknown function DUF794, plant (InterPro:IPR008512) Range:  from: 23471830    to: 23473719    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g57940.1    Description:  ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel. Identical to Probable cyclic nucleotide-gated ion channel 5 (CNGC5) [Arabidopsis Thaliana] (GB:Q8RWS9;GB:Q9XFS3); similar to ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30560.1); similar to ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G23980.1); similar to ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAI Range:  from: 23473893    to: 23477839    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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