Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------ZAT2                                                           ---------->ID1             <---------At4g35610                                                 <---------ICU4                       --------->At4g35610  ---------->ARF1                               --------->ICU4                       <-----------RAV1(1)  ---------->ID1                      <---------At4g35610  ---------->ARF1          <---------RAP2.6(2) -------ANAC58   ------->GAMYB       ------>ZmHOX2a(1) <---------ANAC58   ------->GAMYB  <---------At4g35610 -------ANAC58----------->RAV1(1)  ----------->RAV1(2) <---------ANAC58----------->RAV1(1)    <------ -MYB46(3) --------->YAB1<---------MYB46(3)------>ZmHOX2a(1)        <-----------GT1<---------At4g35610   tcttgtctccaaatcacaacagaagcgttgttgatgctcctgctcctgtaaacattgtcttgtctccaaattacaacagaagcgttgctgctgctccttt  23471400                                                             <---------MYB52(1)                                                      <<<<<<<<<TBF1                         ---------                                              <---------ANAC58                    ----------->GT1      <---------CCA1(2)                       <---------ANAC58             <XXXXXXXXXXXXXXXXXXXXMIR2939 ----DOF2--------->YAB1         --------->ANAC46   <<<<<<<<<TBF1    <----------DOF2      <-----------GT1   aaacgctcatatcatgaacaagggaagcctgaacacagcatggagtttgcttcttcttcttccattaggccttttggtttagtcttgtgaattacctcta  23471500                                                 <---------ANAC58                                    <---------ANAC58    --------->MYB59                 <---------ANAC58 <---------YAB1 <---------ARR14(2)           --------->LBD16    <---------ANAC58               --------->MYB59 --------->ARR14(2)         <---------LBD16      <---------ANAC46            <---------ARR14(2) >ZAT6                    <-----------GT1   <----------DOF2                  --------->ARR14(2)   gccaattcggttcgatttcggtttgtattttccggtttacttgttactttggcttgtgatttagtcttgtttcttagccaattcggttcgatttcggttt  23471600                                                                   ------>ZmHOX2a(1)                                                               <---------ARR11(3)                                                           >>>>>>>>>GT-1                            <                  <---------AtLEC2                      ----------->GT1                            --              <----------DOF2                  --------->TOE2(3)  --------->TOE2(3)          --------      <---------ANAC58                         --------->YAB1  --------->ARR11(3)         --------->TOE2(3)      <---------ANAC58             ----------->GT1--------->MYB52(2)             ---------->DOF2  <--   gtaagtttacttgtttctttgcattactctgtctgagtgtttaatacaatgttagttttggttaatatcctaaattcaaattggaaagaaaacattaaag  23471700     ----------->GT1    ------>ZmHOX2a(2)   <------ZmHOX2a(2)                                         <---------HSFB2a(1)  <---------ARR14(2)                                         --------->HSFC1(2)  --------->ARR14(2)                           --------->ALFIN1 ------NtERF2                              <---------YAB1    <---------HSFC1(2)     --------->ATHB12 ------->RAP2.6(2)                       --------->YAB1      --------->HSFB2a(1)    --------->ATHB51 -->DOF2                                <---------YAB1--------->MYB52(1)  ---------->DOF2 -------LBD16                      ----------->GT1<---------PCF2     <-----------------AGL1  --------   gccggatcggttatacaactgtggaatttggaaacaaatgttattataagtgggcctaatgggaacttctgcccattaaaggcccattatttgaacttat  23471800                                                                           ------>ZmHOX2a(1)                                                                          --------->ANAC46                                                         <---------At4g35610                      ---       <---------ANAC58                                  --------->At4g35610      <<<<<<<<<<<<<<<<<LFY     <---------TOE1(3)                       --------->LBD16         ------>ZmHOX2a(1)            ---     <---------TOE2(3)        *TSS          --------->ANAC46        <---------ANAC58              --- <----------DOF2    <-----------GT1         <---------LBD16         <---------ANAC58    ----------->GT1 ->ICU4<---------ANAC58--------->TOE2(3)   <---------LBD16          --------->TOE2(3)  <---------ATHB12   tagctttaagcttgtccacgatttacattagctatcttcttcgtctccgggactgagaccgctctctcttccttatcctccatcttccaatggtttaatc  23471900       <---------ETT(2)        <---------MYB52(1)       --------->ETT(2)       --------->LBD16     <-----------HVH21<---------ANAC55(2)    ------->GAMYB     --------->ANAC55(2)                                                       -----   <------------AtMYB77  --------->SPL7                            --------->ARR14(2)        <-------  --------->At4g35610--------------->AtSPL3                        --------->GLK1(2)      <---------- ------>ANAC58      <---------DOF5.7(2)                            <---------ARR14(2)   <---------AHL20(2) ------>ANAC46    --------->DOF5.7(2)  ------>ZmHOX2a(1)   --------->ALFIN1            --------->AHL20(2) ------>ANAC58  <---------ETT(2)     <---------ANAC46------>ZmHOX2a(1)     ------>ZmHOX2a(1) ========   cagcaactgtcgacgatgtcgataacgtactccgctatttcctgtaagtttcttcctcactgtgtgtcgaatccgtcctcaatgctcaattttatccatt  23472000                                                                                                    <                                                      <---------LBD16          <----------DOF2      <                                                    --------->GLK1(2)       ------->TEIL         <---                                               <---------ZAT18            --------->ZAT18        ----                                               --------->ZAT14            <---------ZAT18--------->YAB1             <---------WOX13(1)          --------->ZAT2                 <---------------AtSPL8<------           --------->ATHB12              <---------ZAT2                 --------------->AtSPL8<------ ---->AHL20(2)                      <-----------GT1<---------GLK1(2)  --------->DAG2 ================ --------AGL15               <---------MYB52(1)<---------ZAT14       ---------->DOF2 <---------------AGL15 -GT1     <---------YAB1    <-------GAMYB<---------At4g35610   <-----------GT1<---------DAG2  <------ ====================================================================================================   tattgtgagactgtgattgattttggtttccgttgttttatccagctagtacagtttctgggttttcaccaaaaagtgtaccttttgctattcatagcgt  23472100      <------NtERF2     --------->ANAC58     --------->ANAC58                                                  <----------DOF2   <------ZmHOX2a(1)                                                  <---------------AGL15 ---------LBD16                                                       =============================== -----------RAV1(2)                                                --------->GLK1(2) ------ARR14(2)                                                   <---------GLK1(2) ----->ARR14(2)            ------->MYC3                          --------->At4g35610 ---ANAC58                 <-------MYC3                          <---------At4g35610 ---ANAC58              <---------ALFIN1           ------>ZmHOX2a(1) ----------------->AGL1 =====================================================================================MADS_MADS ---ANAC55(2)--------->TOE2(3)       --------->CCA1(2)       <-----------HVH21 MADS_MADS <---------ARR11(3)       --------->ARR11(1)      <---------At4g35610                <-----   aaccaggaggcaatttcttaatcccaacacgttttatagatttgggttctctccttctcttcaggtcagattcctttactagtcagtatcatccaattct  23472200                                                                                                    <                                                                                               ------                                                                                               <-----                                                                                              -------                                                       --------------->AGL15                  <------                                                       <---------------AGL15                ---------                                                   <---------ANAC58                    <---------ANAC46      --------->At4g35610                          <---------ANAC58                    <---------ANAC58      <---------At4g35610                       <---------MYB52(1)                     <---------ANAC58 <---------GLK1(2)                       <---------ALFIN1                           <---------MYB52(1) ======================================================================MADS_MADS  <---------ZAT6 <--- ------GT1                             --------->AtMYB61 <----------DOF2    <---------ICU4<---------LBD16   ccagactctgcttcgttgttgttttggttcttagaattagaccacacttcgttgcttccctttgaagtagagagtcaatgtttactgttatgtgcggata  23472300  Previous    Next  AGI:  At5g57920.1    Description:  plastocyanin-like domain-containing protein. similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25060.1); similar to phytocyanin-like arabinogalactan-protein [Gossypium hirsutum] (GB:ABI96983.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 23470825    to: 23471623    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g57930.1    Description:  APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2). Identical to APO protein 2, chloroplast precursor (APO2) [Arabidopsis Thaliana] (GB:Q8W4A5;GB:Q94JR8;GB:Q9FJM2); similar to APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) [Arabidopsis thaliana] (TAIR:AT5G61930.1); similar to APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) [Arabidopsis thaliana] (TAIR:AT5G61930.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66666.1); contains InterPro domain Protein of unknown function DUF794, plant (InterPro:IPR008512) Range:  from: 23471830    to: 23473719    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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