Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     -------->HAHB4                   --------->ATHB12                   <--------ATHB1                                                            ------>MYB46(1)                   <---------ICU4                                                            ------>MYB83                  --------->ICU4                                                           --------->DEAR3(1)                  <---------YAB1                                                           --------->DEAR4(1)                <---------ICU4                       --------->YAB1                        --------->DREB2C(2)                --------->YAB1               ------->MYC3                               <---------ALFIN1               --------->ICU4                <-------MYC3                       <---------ZAT14          --------->ANAC58                   <-------MYC2                       --------->ZAT14          --------->ANAC46         <----------DOF2--------->At4g35610       <---------ICU4 ------->GAMYB          --------->ANAC58     <---------CCA1(2)  <---------At4g35610      <---------YAB1 --------->DEAR3(2)         ------->TEIL         ------->TEIL   ------->MYC2           <------ZmHOX2a(1)--------->ANAC46  <---------At4g35610<---------WOX13(1)<-----------GT1            <---------TOE2(3) --------->DEAR3(1)   atacagctatgaacggcataatgattgcattgcatctcttttttccatgtgcagatgataacgagtttgaggatgtcaacattgcacagcccaccgactt  23456300                                         <------ZmHOX2a(1)                                        --------->LBD16                             --------->ANAC58                             <---------TOE2(3)                             --------->ANAC58                      <---------------AGL15        --------->ICU4                   <-----------RAV1(2)                 <---------ANAC58     <-----------RAV1(2)                        --------->ANAC58                 <---------ANAC58 --------->HSFC1(2)                             --------->ANAC58     --------->YAB1   --------------->AGL15    --------->ARR11(3)                --------->ANAC46<---  <----------DOF2<---------ANAC46 <---------HSFC1(2)                  <------ZmHOX2a(1)  ------------   ctcactttcatgaagagttgcttactgtatcaaggaaacttcaggagaaggtattgattcaaaacacaaggaggagtctataaacgccagaagttgtttc  23456400          <---------ANAC58          <---------ANAC58     <---------ARR14(2)     --------->ARR14(2)          --------->MYB52(2)  <---------ANAC58  --------->ANAC46  <---------ANAC46<-----------GT1<---------MYB46(3)         <---------ARR11(3)    <---------WOX13(1)  <---------ANAC58<---------DOF5.7(2)                       --------->ARR11(3)  --------->ATHB12 -------DOF2  <---------ZAT6  ------------>MYB.PH3(2)       --------->AHL20(1) <---------YAB1 ----------->TaNAC69(2)   <----------DOF2               ---------->DOF2--------->ALFIN1         <----   ttttgcgtctctgcttgtgttaacgcctctttagtttgttacagacaattgttgtaagtaaagatattgagatgtggaagtttgattgcaacttgccaga  23456500                                                                         <---------ICU4                                                                         <--------HAHB4                                                    --------->ZAT6       --------->ATHB51         <--                                                <---------MYB52(2)      <---------YAB1            <--                                               --------->ZAT2           --------->ICU4           ----                                               --------->At4g35610<---------At4g35610           -----                                               <---------At4g35610--------->At4g35610           -----         <---------At5g28300       --------->At4g35610         <------ZmHOX2a(1)   ----------->HVH21        <-----------GT1<---------YAB1       <-------TEIL    --------->LBD16 <-----------GT1    <----- -----GLK1(2)         <---------AHL20(1)   --------->ALFIN1--------->DEAR3(1) <---------YAB1 --------   ttagtagtttttacagtctcttaatatgtttacaatgagctagaggtgcagctaacacgagccgaggaagctccattattaccatttgacattgttcatt  23456600 -------LBD16                                                           ----------->GT1 -------------------WRI1                                          --------->YAB1  --------->TOE1(3) ----->MYB52(1)                                          --------->MYB52(1)       --------->TOE2(3) ---->WRKY12                          <----------ID1   <---------MYB59  ------->GAMYB <---------TOE1(3) ------>HVH21             ---------->DOF2           <------ZmHOX2a(1)--------->MYB52(1) ----WOX13(1)  ----------->GT1 ------------------------>ANAC81    --------->TOE2(3)   <---------TOE2(3) ->ATHB12  <---------ATHB12   <----------ID1    ---------->DOF2   --------->TOE1(3)--------->DOF5.7(2)   gacggaaaacccaatgagggtgacaaaataaagagacaaaaaaacaaaatgaaaggacataactgtaatcttaacggaaaaaaacgttaaggctataagt  23456700                     <------ZmHOX2a(1)                    ----------->GT1             ---------->DOF2         --------->LBD16        --------->HSFB2a(2)        ----------->GT1                                                  <<<<<<<<<TBF1        <---------HSFB2a(2)                                           <<<<<<<<<TBF1                <-       <---------LBD16        --------->TOE1(3)              --------->HSFB2a(2)                   <- <-----------------AGL1   *TSS--------->TOE2(3)              <---------HSFB2a(2)    <---------CCA1(2) <---------ANAC46  ----------->GT1  ---------->DOF2       ------>ZmHOX2a(1) <<<<<<<<<TBF1    --------   gtgtctggttcgggaaaaagagaggaaaaaaaccctaataaagagaagggattgtgtctccttctcgacttcttcttcttcttctcatttctcaatctca  23456800                                 ================================HOX2a_HOX2a                                 <------ZmHOX2a(1)                                                 <-                                --------->At4g35610              ------>ZmHOX2a(1)     <------NtERF2                                <---------At4g35610       ==============HOX2a_HOX2a    <---------At4g35610                              <-----------RAV1(2)         <------ZmHOX2a(2)          <---------WRKY38(1)                            ------->GAMYB                --------->ARR14(2)          <---------WRKY12                          --------->RAP2.6(3)            <---------ARR14(2)         --------->ATERF1(1) --------DAG2            <---------DOF5.7(2)       --------->GLK1(1)         --------->MYB52(1)  <--- ---------DOF2           --------->MYB52(1)        <---------GLK1(1)   <---------TOE1(2)    <-------TEIL ->TOE2(3)             --------->DOF5.7(2)      --------->LBD16 <---------ALFIN1   <-----------HVH21<   acttttctcttctcttctcttcttcgctaacggcaggagagagagagacccagaaatccgatccctcctctccttggattatcggagtcagcgattcatc  23456900                                                          --------->DAG2                                                      ------>ZmHOX2a(2)                                                    <---------ARR11(3)       --------->DAG2                               --------->ARR11(3)                             --      ---------->DOF2                       <-------TEIL ---------->DOF2                           <- --------DEAR3(1) <----------DOF2          --------->CCA1(2)                                  ------- --------HVH21   <---------DAG2            --------->GLK1(2)<---------LBD16xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------At4g35610                        --------->ARR14(1)  <------NtERF2               <------ZmHOX2a(2)   gtcgctgataaagcttctacctttctcttcgatttttgttgtgagattcgattcgatcttaaggcggattagatcgaggtatgcagcaaggcgatcaaac  23457000                                                                                                   --                             <------ZmHOX2a(1)                                                     --                       <-------GAMYB                                                             ----                       <-----------HVH21                                                         ====                      <---------MYB46(3)                                                         ====                     <---------DREB2C(2)                                                        =====                     <---------RAP2.6(2)                                                        <----                     <---------ANAC58                                                           =====                     <---------ANAC58                                                          <-----                     <---------ANAC46                                                          ------                    <------NtERF2                               ---------->ID1                 <-----                    --------->ATERF1(1)                         <---------CCA1(2)              ------      xxxxxxxxxxxxxxxx>smallRNA(s)               ------>ZmHOX2a(1)                 <----------DOF2<-- ------->ARR14(2)  <---------ERF1            --------->ARR14(2)<------------------------ANAC81 ------ --------ARR14(2) <---------DEAR3(1)       <------MYB46(1)<<<<<<<<<TBF1      ---------->ID1   <------ -->MYB52(1)      --------->ALFIN1         <------MYB83<<<<<<<<<TBF1    <----------DOF2    <---------LBD16   ggttctgagcttgagacctggtggcggtcgaggaaacagactatttggttcctcttcttcttcttcgtctctctcttttggctctctttcatcttcggat  23457100       ------>ZmHOX2a(1) --------->AtMYB61 ----->TEIL ------>P -->ZmHOX2a(2) =============HOX2a_HOX2a ====================HOX2a_HOX2a ====================HOX2a_HOX2a --ZmHOX2a(2)                                                                           ============= =============HOX2a_HOX2a                  <---------------AGL15             --------------->AGL15 ----ARR14(2)                ------>ZmHOX2a(1)   <---------TOE2(3)          <-----------------AGL3 --->ARR14(2)        <---------MYB46(3)    ===================================================MADS_MADS ------ARR10        --------->ALFIN1      ----------------->AGL1            ----------------->AGL3 --->ARR11(3)       <---------AtMYB61     <-----------------AGL1   <---------PCF2       <---------MYB59 ---------GT1       <---------DEAR3(1)<----------DOF2              <-----------HVH21  <---------AGP1 --->AGP1     ------>ZmHOX2a(1)     ------>ZmHOX2a(1)          <---------LBD16 XXXXXXXXXXXXXXXXXXXX>MIR865-5P ---CCA1(2)---------->ID1  ----------->RAV1(2)   --------------->AtSPL8 <---------ALFIN1------>ZmHOX2a(2)   ctacctctccttcgtcctcatggtggtgctcctgcttcctcttttcccttcaaggtaccctcatttctgggtcccctctctaaatttggatctaactccc  23457200  Previous    Next  AGI:  At5g57860.1    Description:  ubiquitin family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO68212.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 23454882    to: 23456537    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g57870.1    Description:  eukaryotic translation initiation factor 4F, putative / eIF-4F, putative. similar to MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70546.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44357.1); contains InterPro domain Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain MIF4-like, type 1/2/3; (InterPro:IPR016021); contains InterPro domain MIF4G-lik Range:  from: 23456726    to: 23461007    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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