Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------MYB52(2)                                                                     --------->MYB46(3)                                                               --------->YAB1--------->ZAT2  <-------                          <---------GLK1(1)               --------->ANAC46   <---------At4g35610                     ---------->DOF2                      --------->ANAC58   --------->At4g35610                 --------->YAB1                      --------->TOE2(3)       <---------ZAT2  ------>ZmHOX2a(1)                <---------AHL20(2)                   --------->TOE1(3)------->GAMYB      ------->TEIL           ------>ZmHOX2a(2)         <---------TOE2(2)    --------->ANAC58  ----------->RAV1(1)   ctagagagtttgatctaaataatcaaagatagccgaacacaggtttcaagttcaaccttcacgaattatcaacaaacccagcagaaaaatgaatcctttg  23452100                                                         <----------DOF2                         ----                                                --------->ARR14(2)                               ----                                                <-----------ARR10                  ---------->DOF2                                                <---------ARR11(1)             <------ZmHOX2a(1) <---                                                --------->GLK1(2)             ----------->GT1    <---                                                ------->TEIL                <-----------RAV1(2) -----                               --------->GLK1(2)<---------ARR14(2)         <------NtERF2       <-----  --------->DAG2              <---------GLK1(2)<---------CCA1(2)        --------->At4g35610  -------- ---------->DOF2   --------->ATHB12            <---------ARR14(1)--------->ATERF1(1)    <----------ID1 ---DOF2        <---------AtLEC2 --------->TOE2(3)  <-----------GT1     <---------At4g35610  --------   acaaaaagagaagatgatgcatgatgggagaagaatcttagacgatttcgaatcttactcttttggagtctcccagcggcaggataaaagaagacaagaa  23452200                                       ===============HOX2a_HOX2a                                       ------>ZmHOX2a(2)                                      ================HOX2a_HOX2a                                      =============HOX2a_HOX2a ----->HSFC1(2)                       <------ZmHOX2a(2) ----->HSFB2a(1)                     <---------ARR14(2) ------HSFC1(2)                      --------->ARR14(2) ------HSFB2a(1)           <---------ZAT6 -->TEIL                   --------->ALFIN1                <---------HSFB2a(2) ----ARR11(3)            <---------ANAC58                  --------->HSFB2a(2) ->ANAC58                <---------ANAC58      <------ZmHOX2a(1)         --------->ZAT18 ->ANAC58                <---------ANAC46   <------ZmHOX2a(1)            <---------ZAT18   ccttgctcagagcttcgatgagggattgagtgttgggacgatcggaggaggaacaaggtttgtagaagtagagagtgcccatgtgaagtctcacttgaat  23452300                                                                            --------->GLK1(2)                                                                            --------->ARR14(2)                                                                            <---------ARR11(1)                                           ----------->RAV1(2)              ------->TEIL                               <---------ANAC58                             <---------ARR14(2)                               <---------ANAC58                             <-----------ARR10                           ============================RAV                 <---------CCA1(2)                           ==========================RAV             <---------ALFIN1                           --------->ALFIN1<---------ZAT2    --------->ZAT2<---------ARR14(1)                         <---------ANAC58  <---------At4g35610<---------ANAC58                         <---------ANAC58  --------->ZAT2------>ZmHOX2a(2) <---------GLK1(2)                         <---------ANAC46  --------->At4g35610<---------ANAC58   --------->ATHB12                     <---------GLK1(2)   <-----------RAV1(2)<---------TOE1(2) --------->YAB1             --------->ANAC58 <---------MYB46(3)        <------ZmHOX2a(2)--------->ANAC46       -----             --------->ANAC58--------->ALFIN1   <---------ANAC58  <---------ANAC58             <-----           ---------->DOF2 <-----------RAV1(1)  <---------ANAC58  <---------ANAC58       ------>ZmHOX2a(2)   caagtctaaattggaaagccatagattgtgtgtgggtgtttcttcagctggcttcacgatcgtagcttgcttcacccgaatcttcatttgatccacgatc  23452400                                                                  <---------LBD16                                                     --------->At4g35610                                                     <---------At4g35610  --------->ALFIN1                                                   ------>ZmHOX2a(2)   --------->DAG2                                           <---------WRKY18(1) --------->ZAT14                                        --------->YAB1         <---------ZAT14                                        <---------AtLEC2  *TSS --------->WRKY12   --------->DAG2           --------->ANAC46     <---------ARR11(3) --------->LBD16 ---------->DOF2            --------->ANAC58     <---------ARR14(2)--------->HSFB2a(2) ---->ZAT6      ---------->DOF2   --------->ATHB12<---------At4g35610 ---------->DOF2---------->DOF2 -ZmHOX2a(2) <----------DOF2--------->ANAC58     --------->ARR14(2)<---------HSFB2a(2)        -------   actaaaaggcaatggctttaaagacagaacacgacttgattagcatgacctgatctgctgatcagtttaccggaaagtggagactgataaagaagaaaaa  23452500                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                            ---------                                                                                            ---------                                                                                     --------->ZAT6 -                                  <---------AHL20(2)                           ----------------------                                ----------->TBP--------->TOE2(3)            <---------ARR11(3)  -----                          ------------>CBF  <---------ALFIN1              --------->ANAC58  ---------     ---------->DOF2    <---------ETT(2)    --------->AtMYB61    ----------->GT1    --------->ZAT18 -  ----------->TBP       --------->ETT(2)   --------->MYB46(3)  --------->CCA1(2)    <---------ZAT18 - --->DOF2    <----------DOF2   --------->AHL20(2)  ---------->DOF2        --------->ANAC58  ---------   gaatataaaaaggctctttttttttgtcgacaatataaaaatgctaccacctcaaaagaaataagagatgaaaaacaagaaatttgagcactagacgcaa  23452600 -------ALFIN1 ------>AtMYB61 ----->MYB46(3)                 <---------ICU4 ------MYB55(2)                <---------YAB1                                          --------->YAB1 >ANAC55(1)                    --------->ICU4                                         <---------YAB1 >ANAC46                     --------->YAB1                                    <-----------GT1 -------->ANAC46             <---------ICU4                               --------->TOE2(3) ->TaNAC69(2)               <<<<<<<<<ARR1               <---------ICU4 --------->GLK1(1) --->P                      <<<<<<<<<ARR2             --------->ARR11(3)  <---------MYB59 >ANAC58                    <---------ATHB12          <---------ARR11(3) <---------ANAC55(2) -------->ANAC58        <-------TEIL  ---------->DOF2--------->GLK1(1)--------->ARR14(2) -------->ANAC58    --------------->AtSPL8           <---------GLK1(1)<---------ARR14(2) >ANAC58            <---------------AtSPL8    ---------->DOF2 ---------->DOF2---------->DOF2 --------   ccactccatgaattgttgagaatgggtacaatcataattcaaaagtgataaagagaaatctttacaaagacagatacctaaaaaccccatgataaactca  23452700                                                                                                    -                                                                                                  <--                                                                                                  <--                                  <---------At4g35610                                            <---                              ----------->RAV1(1)                                          --------->MYB52(1)                 <----------DOF2<---------ALFIN1                              <------ZmHOX2a(1)  ----            ---------->DOF2--------->ANAC58                                 --------->ANAC58 --------      --------->MYB52(1)   --------->ANAC46                      <---------WOX13(1)      --------->ANAC58      --------->YAB1       --------->ANAC58           ---------->DOF2       --------->ANAC58 -------- ->ANAC46------->GAMYB   ---------->DOF2    <----------DOF2    --------->ATHB12          --------->ANAC58   acttacaataacagcaaagctttacaaaaaagccacagcttattgtctttgatgaacaaagagagtgattggctcagtaaggaacaagaacacgaacgga  23452800                      --------->ANAC58               --------->ARR11(3)               <---------ARR11(3)               <---------ARR14(2)        <---------ARR14(2)        --------->AGP1--------->ANAC55(2)        <---------ARR11(3)                                           <-----------HVH21        <---------AGP1--------->ANAC58                            ------>ZmHOX2a(1)        --------->ARR11(3)                             <---------HSFB2a(1)        --------->ARR14(2)                             --------->HSFB2a(1)       <---------CCA1(2) --------->MYB52(1)<----------DOF2        --------->LBD16 -------->ALFIN1      --------->ANAC46    <---------DAG2        ----------->RAV1(2) ----MYB83------>ZmHOX2a(2)    <------ZmHOX2a(2)       <---------HSFC1(2) ----MYB46(1)  <---------ARR11(1)         <----------DOF2   <----------DOF2 ------AtMYB61 --------->ARR14(2)  ---------->DOF2     --------->HSFC1(2) ----->DAG2   <---------CCA1(2)=============================HOX2a_HOX2a                    <--------- ->ANAC58<------ZmHOX2a(2)    --------->AGP1          --------->ARR11(3)                   --------->TOE2(3) ->ANAC58--------->GLK1(1)    --------->ARR11(3)     <------ZmHOX2a(1)        ---------->DOF2   aggtggaccagatctcatatcttcaagtaacagatcaagaagcgcctttgctataggaccttcttttcctgagtcagacagaaagaaacccatctttaat  23452900                                                                               --------->AHL20(1)                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                        --------->REM1(1)                           ---------->DOF2                           --------->TOE2(3)                         <---------AHL20(2)                     <---------ANAC58               <---------ANAC55(2)   <----------DOF2      --------->GLK1(2)    <---------AHL20(1)    <---------ATHB12     --------->AHL20(2)           --------->YAB1 --------->TOE1(3)   --------->GLK1(2) <---------AHL20(2)      ----------->GT1    <---------ANAC58  --------->WOX13(1) --------->AHL20(2)  <---------AHL20(2) --------->YAB1    <---------ATHB12 -DOF2    --------->WOX13(1)   --------->ALFIN1      <---------YAB1-------->P --------->AHL20(2)   cagccaatctatccatcatgtaagtaattaaaagtgaggcttttaaaatgtttatatgataatcttacttaccttcaccaataaattcttcatcccattg  23453000  Previous    Next  AGI:  At5g57840.1    Description:  transferase family protein. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G48930.1); similar to hydroxycinnamoyl-CoA quinate hydroxycinnamoyltransferase [Coffea canephora] (GB:ABO77957.1); similar to hydroxycinnamoyl-CoA quinate hydroxycinnamoyltransferase [Coffea canephora] (GB:ABO77956.1); contains InterPro domain Transferase (InterPro:IPR003480) Range:  from: 23450030    to: 23452458    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g57850.1    Description:  aminotransferase class IV family protein. Identical to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8L493;GB:Q9FJM9); similar to aminotransferase class IV family protein [Arabidopsis thaliana] (TAIR:AT3G05190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44058.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544) Range:  from: 23452517    to: 23454553    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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