Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------ANAC58           --------->ANAC58                                                   <---------ANAC58           --------->ANAC58                                             ---------->DOF2           --------->ANAC46                                            --------->YAB1       --------->ANAC58                                               <---------YAB1       --------->ANAC58                    <---------ANAC46       <---------ANAC58                  < ----DOF2 --------->ZAT18         --------->YAB1                  <---------ANAC58            <------   cttactcacaagcacacaactactaacttgaagcattaagaactgacttgaagaatgttgaacagagtgcttatcaaagtgcttatcaactagaaattca  23410800                                                                                          --------->YAB1                                                                                          <----------              <---------At4g35610                                              <---------LBD16    ----------->GT1                                                       --------------->AGL15  <---------ANAC58             --------->ZAT18                            <---------------AGL15  <---------ANAC46             <---------ZAT18                           <-----------------AGL2   <--  <---------ANAC58   <----------DOF2                                  <---------YAB1   --------->WOX13(1) <---------TOE2(3)   ------>ZmHOX2a(1)                             --------->GLK1(2)  <---------AHL20(2) -----------GT1 --------->GLK1(1)                    <---------AHL20(2)  <-----------------AGL3   <-- -TEIL        --------->At4g35610               <---------YAB1    <---------GLK1(2)   --------->AHL20(2)   tttaacgtgtaacttcagctatccttttgtatgggcactcgtattttgttgtgattttttttttcttagattctgactatttgtggaattaatcacatta  23410900           <---------ANAC58           <---------ANAC55(2)           ----------->GT1           <---------ANAC46           <---------ANAC58           <---------ANAC55(1)  ------------>CBF            ----------->GT1                 <---------ANAC58 -GT1     <-----------------------TaNAC69(2)                  <---------ANAC58      --------->ZAT6 --------DOF2     --------->DAG2                              <---------AtLEC2    <-----------GT1 -------DAG2     ---------->DOF2                          <----------DOF2   <---------AHL20(2)   ctttttcaatgtaacgtgtaaaagtagattaatagaaaaaacatgtagattaatagagagctttgcatgttcttgcattttttttatctctacatatact  23411000                                              <--------ATHB1                                              -------->HAHB4                                              --------->ATHB51                                              <---------ICU4                                             --------->AHL20(2)                                          <---------AHL20(2)                                         --------->AHL20(2)                                         <---------AHL20(2)           <---------AHL20(1)           <---------YAB1           --------->AHL20(1)        --------->ICU4           <----------DOF2        <---------YAB1           <---------AHL20(2)        <---------YAB1          --------->TOE2(3)       <---------AHL20(2)           --------->AHL20(2)     <---------YAB1          <-----------GT1           <---------AHL20(2)          <---------AHL20(2)  <----------DOF2<---------AHL20(2)                   <---------AHL20(2)          --------->AHL20(2)  <---------DAG2 <---------ATHB51<---------DAG2    ------->TEIL<---------TOE2(3)  --------->YAB1       <-----------GT1<---------ICU4 --------->AHL20(2)    ------->TEIL <---------YAB1   tcattcatagaattaaatttggaatttacacactttttgattattaaataattgtttatataacctttttgtaaatgtatgtatatttttattaatgttg  23411100                                                                                  ------>ZmHOX2a(1)                                                                              <-----------GT1                                                                             <-----------GT1                    <---------ANAC58                                        <---------AHL20(2)                    <---------ANAC58                                       --------->AHL20(2)                 XXXXXXXXXXXXXXXXXXXX>MIR776                           --------->AHL20(2)        <---        <---------YAB1                            <---------------AtSPL8<---------AHL20(2)     ------      <-----------GT1        <---------TOE2(3)--------->AHL20(2)      <---------MYB52(1)<-----------GT1   attttgttttacgatttctatggcttccattaatgttttttttttgttttaaatagtactggtctagcttccattaattttatcctcttatttccctata  23411200                                                                                                  ---                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                           <---------YAB1                                                                                          --------->ARR11(3)                                                                                         --------->YAB1                                                                                        <---------YAB1                                                                                      <---------ICU4                                                                                      --------->YAB1                                                                                     <---------YAB1                                                                                     --------->ICU4                                                                                   --------->YAB1 <--                                                                                  <------ZmHOX2a(2)                    <-----------HVH21                                            <---------ARR11(3)               ------>MYB83<---------ICU4   --------->ANAC58                    <------ZmHOX2a(1)<---            --------->At4g35610             --------->ANAC58    ------>ZmHOX2a(1)--------->ARR11(3) <            <---------At4g35610   <---------ZAT14               =========================HOX2a_HOX2a- ------AHL20(2)------>MYB46(1)    --------->ZAT14           XXXXXXXXXXXXXXXXXXXX>MIR847 --------->ICU4 ----->TBP  ----------->RAV1(2)*TSS       ---------->DOF2<---------YAB1   --------->ATHB12<---------ARR11(3)   taaacacaaacttcacctgccctctcacatcatcacttcagagcaaaagcatcatatatatcattcctcttcttcttgattaggatcatgatgatcatca  23411300                            -------->HAHB4       <---------ICU4       --------->YAB1       --------->YAB1       <---------ICU4    --------->YAB1         <---------YAB1    <---------ICU4         --------->ICU4   --------->ICU4        --------->YAB1 --------->YAB1          <---------ICU4 <---------ICU4         <---------YAB1 ------>YAB1          --------->YAB1                                                          ------- --->YAB1            <---------YAB1                                                          -------- ----ICU4  <---------ARR11(3)                                                                ------->MYC3 ---YAB1 <---------YAB1 --------->ICU4                                                       <-------MYC3 -ICU4--------->ICU4<---------ARR11(3)                                                       ------->MYC2 >YAB1<---------YAB1--------->ARR11(3)                                                       <-------MYC2 -------ICU4       --------->YAB1                        <---------CCA1(2)           <----------DOF2 ------YAB1--------->ARR11(3)                      <---------DAG2           <---------YAB1  <-------- ---------YAB1    <---------YAB1  ------>ZmHOX2a(2)<----------DOF2     --------->REM1(1)  <xxxxxxxxxx -------->ICU4  --------->YAB1<---------YAB1<----------DOF2         --------->ANAC46 ================   tcataatcatcatgatatttatgatcataatgatgatcgtttctctctttcaactttttctatcttctccactacatcatggttgtactttcgaacgtgt  23411400                      <---------ANAC58                   --------->GLK1(1)      <---------LBD16 <---------ANAC46     --------->MYB52(1)    ----------->HVH21 <---------ANAC58 -->ALFIN1         <---------GLK1(1)                          <---------DAG2 ->TOE1(2)        <---------ARR11(3)                          <----------DOF2 -TGA1a --------->LBD16                                 <----------CDC5             ----------->GT1 xxxxxxxxxxsmallRNA(fl3)          <---------ZAT6     ------>ZmHOX2a(1)        --------->YAB1 =bZIP_DOF        --------->ARR11(3)              <---------YAB1      <-----------GT1     <----------ID1   gactatctcacggagaagaagatttcttggacattagtgttccattggcattatcctcgctgagcttttttttttctctatgaaaacagaaaaaaacaaa  23411500                                                              <---------AtLEC2                                                            --------->AtLEC2                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------WRKY18(1)                                 --------->HSFB2a(2)  xxxxxxxxxxxxxxxx>smallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------ARR11(3)         xxxxxxxxxxxxxxxx>smallRNA(i)                           --------->ARR11(3)        xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------HSFB2a(1)        <---------ANAC58                         --------->HSFB2a(1)        <---------ANAC58                           <-----                         <---------HSFC1(2)   <---------ARR11(3)                              <xxxxxx                         --------->HSFC1(2)   <---------GLK1(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <--                       ---------->DOF2        --------->ARR11(3)                          <---------AHL20(2)                    --------->YAB1           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <----------DOF2               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxx   aaatagttttgtttctactaaatcagaaagttcttctataatttagaagatttttcttgaccttgcaaggcttattagttttgtattgttcttttatttt  23411600                                                               <---------DAG2                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <-------GAMYB ------>ZmHOX2a(1)                                        --------->MYB52(2)--------->LBD16           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxsmallRNA(s)  <-----------GT1                       <---------MYB46(3)------>ZmHOX2a(1) <---------CCA1(2)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----AHL20(2)           --------->AHL20(2)       <XXXXXXXXXXXXXXXXXXXXMIR390A/B xxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------DOF2           <---------AHL20(2)    <-----------GT1  <----------DOF2             <---------ICU4 x>smallRNA(si3)        <---------AHL20(1)---------->ID1----------->RAV1(2)                --------->ATHB51   cttttatcttctcttcatttttgtattttattttgtattggtttgttgtttctattcctcctgagctttatgtataattcactactaatcccataatttc  23411700  Previous    Next  AGI:  At5g57730.1    Description:  unknown protein Range:  from: 23410608    to: 23410736    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g57735.1    Description:  tasiR-ARF; other RNA. expressed protein, 150178 Range:  from: 23411231    to: 23411726    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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