Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                   <---------AHL20(2)         -------                                                          <---------ARR11(3)           --------->ANAC58                                                          --------->AHL20(1)           --------->ANAC58   <----------DOF2                                        <---------AHL20(1)           <---------ANAC55(2)   <---------DAG2                                    ------------>CBF                 <---------LBD16 ----ZmHOX2a(1)                                     --------->ANAC58               <-----------HVH21 ----AGL15                                 <---------AHL20(2)     --------->AHL20(2)----------->HVH21 --->AGL15                 --------->AHL20(2)       --------->ANAC58           <---------ARR14(2)  -- ---->AGL3 <---------AHL20(2)  --------->YAB1  --------->YAB1 <---------YAB1   --------->ARR14(2)  --   ggagactttttgttaaatttttagcccgattaaacataacattttttaatcagcatgcaatattttcatttaatgtgctcggttctgtcacggacactga  23363700                                                                 ---------->ID1        <-----------RAV1(1)       <-----------GT1                                       <----------DOF2          <---------YAB1-    --------->ICU4                                         <---------------AGL15     <------------CBF --------ANAC55(2)                                         --------------->AGL15 <---------YAB1------ ---->HVH21     <---------LBD16                            ========================================== --------->GT1 <-----------GT1      ------------>CBF <-----------GT1          --------->ICU4   ------ ------->ANAC55(2)  <-----------HVH21             <---------AHL20(2)--------->ICU4 <---------AHL20(2)   catgtaatttttcattttcacgggtgagataattttcagacaatattagaatttttttcttccctttgtagttattcgaaattatgttattgttgggaag  23363800                                                       <---------------AGL15                                                      <-----------------AGL3                                              --------->ATHB12       <------ZmHOX2a(1)                                         --------->YAB1--------------->AGL15                                      --------->TOE2(3)------>ZmHOX2a(1)                                   ------>MYB83       --------->TOE2(3)                                   ------>MYB46(1)    ----------------->AGL2                                 <---------MYB59      ----------------->AGL3  <---------At4g35610                                <---------ANAC55(2)  ------>ZmHOX2a(2)        --------->At4g35610   -                                --------->ANAC55(2)  =======================HOX2a_HOX2a         <---- ---------->GT1               <-----------GT1<---------AHL20(2)      --------->YAB1            <----- --->ANAC58                <---------AHL20(2)<---------YAB1         ----------->GT1        --------->ANAC55(2) ======================================================================MADS_MADS           ---------- --->ANAC58               --------->AHL20(2)<---------AHL20(1)   ---------->DOF2           <---------ANAC55(2)   taatgaaaaaaaactcaacaaaattcgatttaatacctatccataatattattgatcctaaaaatagaaaaggataattttgctgagtcagaaacgtgat  23363900               --------->LBD16  --------->SPL7              <---------HSFB2a(2)              <---------ANAC46--------->TOE1(2)           <-----------GT1    <---------SPL7  ----------->HVH21           --------->TOE2(2) <---------HSFB2a(2)        --------------->AtSPL3 -------->ANAC46   ---------->DOF2                           --------->ANAC58 ------TaMYB80--------->HSFB2a(2)       <----------DOF2      --------->ANAC58                   ----- ----ARR11(3)<---------LBD16<---------------AtSPL3     <---------AHL20(2)               ----------->GT1 ->GT1 <---------MYB52(1)  <---------DOF5.7(2)        --------->AHL20(2)         <-----------HVH21   attcgcgacgttgtttccggataaagagtaaacgtacgactgctttaactcacctataaaatcacgaccgtcgatttcatttatgtcaaggggcaaaact  23364000                                    --------->bZIP60(2)                                    --------->bZIP60(1)                                    <---------bZIP60(1)                                <-----------TGA1                               --------->ANAC58                               --------->TGA1a                               --------->ANAC46                               <---------ANAC58                               <---------ANAC55(2)                               <---------TGA1a                               --------->bZIP60(1)                               --------->ANAC55(2)                               <---------ANAC58                            <---------ICU4                               <---------O2                                --------->YAB1                               --------->ANAC58                         --------->YAB1                               --------->O2                             <---------ICU4                               <---------TGA2(1)                       <---------YAB1                               --------->TGA2(1)                     --------->YAB1                               <---------bZIP60(1)                   <---------ICU4                              --------->SPL7                        <---------YAB1                              <-----------STF1                    --------->YAB1                    -                             <---------TGA2(2)                    <---------ICU4                   --                           <---------ANAC58                      <---------YAB1                    <-                           <---------ANAC58                    <---------ICU4                      --                       <----------DOF2 <---------ICU4          --------->YAB1                     --- ------------------------>ANAC81<-----------HVH21             <---------ATHB12                    --- ------>GT1            ==================bZIP_DOF        --------->TOE2(3)<---------YAB1        -----   gaaaatcacacaaaaacaaacaaaactttgcttacgtcacatcattatctgtgactaattcttaatcatcatcatcatcatcacttacttaaatctaaaa  23364100                                                ---------->DOF2                                          --------->HSFB2a(1)  *TSS                 <----------DOF2   <---------ARR14(2) -------->RVE1(1)    <---------YAB1      <-----------ARR10 ------->GLK1(2)    <---------ARR11(3)   --------->ARR14(2)                                     ----- --------ARR11(3)   --------->ARR11(3)   <---------ARR11(1)                                     <---- ------->ARR11(3) <---------AHL20(2)     --------->ARR11(3)                           <----------DOF2 ------>RVE1(1)<---------AHL20(1)        <---------ARR11(3)                          <---------ANAC46 ------>CCA1(1)--------->AHL20(1)       <---------CCA1(2)                            <---------ANAC58 ---->AHL20(2)<---------AHL20(2)   <-----------GT1                   <-----------GT1 <---------ANAC58   aaatctctgtttgtatatatattatctttgcgatttttatccaaatcttccaaagcttagttttttttttttttcaatttctctcttgcgttttcgattt  23364200                                          <-------GAMYB                                         <---------MYB46(3)                                        <-         <----------DOF2                 --------->MYB52(2)                                        <-      --------->ARR11(3)                <-------TEIL                                             ----      <---------ARR11(3)            <---------TOE2(3)                                   <----------DOF2 ---->AHL20(2)                      <---------TOE1(3)                                 --------->At4g35610 -----AHL20(2)            --------->MYB46(3)              ---------->DOF2       ------>ZmHOX2a(1)<---   tattacaagaactttgttttgggcttcatccatcgttcaaggttcgttgaaaactatgaagaaagttgagttttttatgctccttctctgcttcatcgca  23364300                                                                   --------->AHL20(1)                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)                                                          --------->ATHB51                                                          <--------ATHB1                                                          --------->YAB1                                                          <---------ICU4                                                          --------->ATHB12                                                          -------->ATHB1                                                         <---------YAB1                             <                                                         --------->ICU4                         <----   --------->At4g35610       ---------->DOF2           --------->WOX13(1)               --------->AHL20(2) ----------TGA1            --------->YAB1             ------------>ATHB5                <---------AHL20(2) ----------HVH21        <---------ICU4       <---------TOE2(3)    --------->YAB1 <---------TOE2(3)--- ----->At4g35610       --------->ICU4      <---------AHL20(2) --------->AHL20(2)---------->DOF2 ----- ---NtERF2<---------ZAT6--------->YAB1    <---------YAB1 <---------ATHB12 --------->LBD16<---------AHL20(2)   gcgtcatctctagtggtaagacttaataatcaaaagctcgaatttttaatgttcttccaatcattgaaatataatccgagattaaagtttttaaatttga  23364400                               ------>MYB46(1)                               -------->P                               ------>MYB83                              ----------->RAV1(1)            ---------->DOF2  --------->AtMYB61       <---------ANAC58     --------->MYB46(3)       <---------ANAC46  --------->MYB46(3)       <---------ANAC58  ------>ZmHOX2a(2)           <------NtERF2       --------->ATHB12     <------MYB83        =====================HOX2a_HOX2a               <---------YAB1     <------MYB46(1)   --------->ARR14(2)           --------->ANAC58  <---------At4g35610          --   <---------WOX13(1)  <---------ARR14(2)           --------->ANAC58  --------->At4g35610       ----- --------->ATHB12  <---------At4g35610  <---------At4g35610    --------->ICU4                  ------ ---------YAB1     ----------->RAV1(2)  --------->At4g35610--------->ZAT14                <---------ANAC58 -----ARR11(3)     <---------ZAT2       <---------ZAT2     <---------ZAT14                <---------ANAC58 --->ZmHOX2a(2)    --------->At4g35610 ------>ZmHOX2a(1)   --------->ZAT18        ----------->GT1  <- ---->ARR11(3)     =======================RAV      <----------ARF1   <---------YAB1    --------->GLK1(1)   tcttgattggtgtgtaaagtctgctgatccaccaacatgtcctgctgatttgggaggcaagtgtagtgattctgatgactggcaaggtgatttcttccct  23364500                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                        <<<<<<<<<<MYB80                    <---------AtLEC2                                                       <---------MYB46(3)                  <---------ANAC58                                                       <------MYB46(1)                 <---------ANAC46                                                       <------MYB83                    <---------ANAC58 ------->GLK1(1)    ----------->GT1                   <---------AtMYB61        <---------ARR14(2) ---->LBD16  <---------ANAC55(2)                     <---------MYB52(1)        --------->ARR14(2) --->LBD16   <---------TOE2(3)--------->YAB1       <-----------RAV1(1) --------->TOE2(3)   <---------ANAC58 --------GLK1(1)   <---------TOE2(3)       <----------DOF2             <----------DOF2 <---------ANAC58   gaaatccccaagattaagtatgaggtaaacaatggtgatgtttctctttaaaactgttggtttaagttggaaactttagtggatttgttgtttgcatgtg  23364600  Previous    Next  AGI:  At5g57655.1    Description:  xylose isomerase family protein. Identical to Xylose isomerase (XYLA) [Arabidopsis Thaliana] (GB:Q9FKK7;GB:Q8L759); similar to unnamed protein product [Vitis vinifera] (GB:CAO43316.1); contains InterPro domain Xylose isomerase-type TIM barrel (InterPro:IPR012307); contains InterPro domain Xylose isomerase; (InterPro:IPR001998); contains InterPro domain Xylose isomerase-like, TIM barrel (InterPro:IPR013022) Range:  from: 23364102    to: 23367229    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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