Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->GLK1(1)      ------->GAMYB        ------->GAMYB            <---------MYB52(2)       --------->ANAC46          --------->MYB46(3)                     <---------ETT(2) ------ATHB12                    <---------MYB55(2)                     --------->ETT(2) ---->ANAC58                     <---------MYB111(2)            <-----------RAV1(2) ---->ANAC58             <---------GLK1(1)            --------->ICU4<---------AtMYB61 >YAB1<---------LBD16    --------->ARR14(2)     ------>ZmHOX2a(1)   --------->ALFIN1   tcaacttcaacggaaacctagttttcgaattcccaacaaacccatctatcctaggcattatgtcgaacaggtggtctacagaatggacattttgtacaaa  23291800                                                                    --------->At4g35610                                                          <-------MYC3                                                          ------->MYC3                                                         <---------O2                     <---------ARR14(2)                                                         --------->O2 ----------->HVH21   --------->ARR14(2)                                                         --------->TGA1a               --------->ANAC58                      <---------YAB1                     <---------TGA1a             --------->MYB52(1)                 <---------ICU4                          <---------ANAC58         --------->ANAC46                 --------->ATHB12                        <---------ANAC46         --------->ANAC58                 --------->YAB1                          <---------ANAC58        <-------------------                <---------YAB1                  <---------WOX13(1)  <---------ZAT2--------->ANAC58           --------->YAB1               <---------TOE2(3)<---------ANAC55(1)   <----------ID1     ---         --------->ANAC58    <---------ANAC46 --------->ATHB12      <---------At4g35610--------->ANAC58         --------->ANAC58    ----------->GT1 <---------YAB1--------->ALFIN1   --------->ATERF1(1) <--   cacatgatcacaaggattatcattgtaattcgcgtaaatactagggtttgattgatgaaacgtgtgcgagagctgatggagacgacgaaacggaaatggg  23291900                                       ----------->GT1                                     <---------TGA1a                                     <---------ANAC46                                               <                                     <---------ANAC58                                              --                                     --------->TGA1a                                           ------                                     <---------O2                                              ------                                     <---------ANAC58              ---------->DOF2             <-----                                   <------NtERF2           <-------TEIL                       -------                                   ------>NtERF2           <---------ZAT14        --------->ZAT14 ---                                 --------->SPL7         <---------ANAC46          <---------ZAT2 ----                                 --------->ZAT18        <------MYB46(1)           <---------ZAT14----             ==================================bZIP_DOF <------MYB83  --------->At4g35610 <----------DOF2             ---------->DOF2  <---------ANAC58          <---------ANAC58          --------->ZAT2-----    <---------AtLEC2          <---------ANAC58          <---------ANAC58          --------->At4g35610  <---------YAB1           <---------MYB52(1)          <---------MYB46(3)         <---------At4g35610 --WRI1----------->GT1--------->ARR14(2)               <---------------AtSPL8   <------NtERF2<------- ------>GLK1(1)       <---------ARR14(2)               --------->MYB59<---------At4g35610<---------ANAC58 -------GLK1(1)     ----------->ARR10=========================================bZIP_DOF   <---------ANAC58   aactctgaatggagataaagagaagaaccgttgagtccgccgtgtgaaatcggaagttgggtacagagcgaaagctgaaggcagagctgtgtctttccgc  23292000                                                --------->REM1(2)                                              --------->LBD16                                              <------NtERF2       --------->ANAC58                       ------>NtERF2       --------->ANAC46                      --------->RAP2.3(2)       --------->ANAC58                      --------->DEAR3(1)      <---------LBD16                      --------->LBD16  <---------ALFIN1                         <---------At4g35610 ---------ALFIN1                           ------>NtERF2 ------->MYB46(3)                         --------->ANAC46                                        --- --->LBD16                               <---------LBD16                                          <-- --->At4g35610                         --------->ARR14(2)                        <--------P      <--- ----At4g35610                     <------ZmHOX2a(1)                            <-------GAMYB  <----- -->ANAC46                        --------->ANAC58                    <---------At5g28300    <-------TEIL --->NtERF2                       --------->ANAC58                   <-----------GT1     <---------YAB1 ----->DEAR3(1)                  <---------TOE1(2)                <---------GLK1(1)    <-----------GT1 ----->RAP2.3(3)           <---------GLK1(2) --------->RAP2.6(2)  --------->GLK1(1)--------->MYB52(2) ---->ERF1          <-------GAMYB<---------TOE2(2)              <------ZmHOX2a(1)<---------MYB52(1)<- --LBD16--------->LBD16---------->DOF2 <---------ARR14(2) <-----------HVH21    <---------MYB46(3)<---   agccactctccgcaacgatttcggttaaagaatcgcaggaaattccgccgcgaagacatccgtcgaggatttcacagcctgtggttagtttacgattcgt  23292100               --------->ARR14(2)         <------NtERF2       <---------DEAR3(1)     <-----------HVH21    ------>ZmHOX2a(2)                                    ------------------------>ANAC81    ===============HOX2a_HOX2a                           --------->ANAC58   ================HOX2a_HOX2a                           --------->ANAC58   <------ZmHOX2a(2)     <----------DOF2           ------>NtERF2  <---------ARR14(2)  ------>NtERF2               --------->ANAC46<---------ATHB12  --------->ARR14(2)  --------->LBD16             --------->DEAR3(1) --->NtERF2    <---------ARR14(2)                 --------->DREB2C(2) -------RAP2.3(1)   <---------LBD16              --------->MYB46(3)--------->YAB1 ------At1g77200--------->GLK1(2)         <---------AtLEC2   -------->P             ----------->GT1 ------HVH21 ----------->ARR10          <-----------GT1---------->DOF2   --------->AHL20(2) -----NtERF2<------ZmHOX2a(1)  <-----------GT1  <---------At5g28300--------->AHL20(2)        -------- ------DEAR3(1)<---------GLK1(2)<-----------GT1<-----------GT1  --------->WOX13(1)---------->DOF2   cggcgatcgtcggaggagattctccggcttaattttcccattttgcatttcaccgccaaaagctaccaattaaaaaaaaatcgcaaaagttataagcgct  23292200                     <---------ANAC46                     ----------->GT1                     XXXXXXXXXXXXXXXXXXXX>MIR4228                ------>MYB83                ------>MYB46(1)                 <------------CBF              <---------MYB59                  --------->ATHB51            <---------ARR11(3)                 --------->ATHB12                          <---------KAN4(2)     --------->AHL20(2)                       <---------YAB1                            --------->YAB1     <---------AHL20(2)                   --------->YAB1                   ------------>CBF    --------->AHL20(2)                   <---------YAB1       --------->TOE2(3)       <---------TOE2(3)  *TSS  ---------->DOF2     --------->ANAC46  <---------AHL20(2)          ----------------->AGL1 ->ANAC46   --------->ARR11(3)         <-----------GT1        --------->TOE1(3)<---------ATHB12   acaaaatttaaaaagacctaatcgcgttaaacgacatcgttttatcatattattgggcttcttaccttgacattaggcccaataagttaagaataaacgt  23292300                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               *TSS                                                                                               <-----                                                                             <---------------------WRI1                                     --------->AtLEC2                <---------bZIP60(1)       <-----                                  <-------TEIL  --------->CCA1(2)    <---------O2              <-----                               <------MYB46(1) --------->ARR14(2)    --------->O2              ------                               <------MYB83    <---------ARR14(2)    --------->bZIP60(1)       <-----                           <----------DOF2    <------ZmHOX2a(1) --------->MYB52(1)      --------->MYB52(1)                     --------->AtMYB61       <------MYB83      --------->TOE1(2)  --------->ANAC58              <-----------GT1 --------->MYB59<------MYB46(1)  --------->MYB46(3)  --------->ANAC58  <------------CBF  --------->MYB46(3)     <--------P         <---------MYB52(2)---------->DOF2------   ctactattgggcttattttcaaaccatcgcattaggtccatgcaggtaggatacgagtaatgaaacaaacgacgtcgttttcgaaagaaacaacgaagat  23292400                                                      ------>ZmHOX2a(2)       <----------DOF2                            ----------->HVH21 <---------CCA1(2)                               ------>ZmHOX2a(2) -->ZmHOX2a(2)                                  --------->CCA1(2) --ZmHOX2a(2)                                   <------ZmHOX2a(2) ----ARR14(2)                                  <---------AGP1 --->ARR14(2)                                  --------->ARR11(3) ----ARR14(3)                                  <---------ARR14(2) ----AGP1  ---------->ID1                      <---------ARR11(3)                        <---------TOE2(3) ------ARR10             ------>NtERF2         --------->AGP1                            <---------YAB1 --->ARR14(3)           --------->DEAR3(1)     <-----------ARR10                   --------->MYB46(3) ----ARR11(3)           ----------->HVH21      --------->ARR14(2)           --------->WOX13(1) --->ARR11(3) <----------DOF2<---------GLK1(2)<---------CCA1(2)  <---------At4g35610--------->ATHB12   ctcatttctctttctccttttcttctccgacgattcttctcagttctcagatctgatcgatttcttcatcagatgtttcaatctaaccattgagattgaa  23292500                       <---------ARR11(3)                    <---------HSFB2a(2)                                             ----------->HVH21               <---------HSFB2a(1)                                                 --------->DEAR3(2)               --------->HSFC1(2)              <---------ANAC46                    ------>ZmHOX2a(2)               <---------HSFC1(2)              <---------ANAC58                   <------ZmHOX2a(2)               --------->HSFB2a(1)             <---------ANAC58         --------->ANAC58      <---------MYB52(1)<------ZmHOX2a(2)<------ZmHOX2a(2)              --------->ANAC58    --------------->AGL15               --------->ARR11(3)             ------->GAMYB<---------ETT(1)    <---------------AGL15           <---------LBD16                   --------->MYB46(3)   <---------YAB1   --------->HSFB2a(2) <---------ARR11(3)           -------->P  <---------ARR14(2)   ----------------->AGL3         --------->ARR14(2)         <---------ZAT2      --------->ARR14(2)   ----------------->AGL2         <---------ARR14(2)         --------->ZAT2      ------->TEIL   tagtcaccattagtagaagcttcgagatcaatttcgaatcgggatcatgtcgtgtttagccctagctctgcaaccagcaaatggatccgacattttgctc  23292600                                                                                                   --                                                                                        ----------->RAV1(1)                                                                                      <---------At4g35610                                                                          <---------ZAT18     -------                                                                         <---------ANAC58   ---------                                                             <-----------HVH21--------->HSFB2a(2)  <-                                                            <---------ANAC58  <---------HSFB2a(2)----                             --------->TOE2(3)              <---------ANAC58  ------>ZmHOX2a(1)------                             --------->TOE1(3)      --------->TOE2(3)    <---------ANAC58--------->At4g35610                    --------->ANAC46          --------->ARR14(2)   --------->YAB1     --------->ZAT2                    --------->ANAC58          <---------TOE1(2)  --------->ANAC58     --------->At4g35610                    --------->ANAC58          <---------ARR14(2) --------->ANAC58  --------->At4g35610   caaactagagaatggtttccaccagcaagagccttaatcgctctctcgtattttcgtcaaatgcgtcaagcattagcgtcctcgaagcagcagcatcagc  23292700  Previous    Next  AGI:  At5g57450.1    Description:  XRCC3 (Arabidopsis thaliana homolog of XRCC3); ATP binding / damaged DNA binding. Identical to DNA-repair protein XRCC3 homolog (XRCC3) [Arabidopsis Thaliana] (GB:Q9FKM5); similar to ATRAD51C (Arabidopsis thaliana Ras Associated with Diabetes protein 51C), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT2G45280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60498.1); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain DNA repair and recombination, RecA-like (InterPro:IPR016467); contains InterPro domain Rad51, C-terminal (InterPro:IPR013632) Range:  from: 23290319    to: 23292202    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g57460.1    Description:  protein binding / protein transporter. similar to hypothetical protein OsI_027394 [Oryza sativa (indica cultivar-group)] (GB:EAZ06162.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43236.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60499.1); contains InterPro domain Clathrin adaptor, mu subunit, C-terminal; (InterPro:IPR008968) Range:  from: 23292395    to: 23294714    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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