Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                <---------AHL20(2)                <---------YAB1 ----------->GT1                                        ------>MYB83             <----------DOF2<---------STY1(2)                                 ------->GAMYB        --------->YAB1      --------->STY1(2)                              ----------->RAV1(1)       <---------ATHB12    ------>MYB46(1)                           --------->GLK1(2)------>MYB46(1)      ------>MYB83         ------>MYB83                              <---------ARR14(2)          ----      ------>MYB46(1)    --------->TOE1(2)                           --------->ARR14(2)       <------     --------->WOX13(1)------->TEIL                  <---------ZAT6  <---------ARR11(3)  --------->YAB1   gagagaccaatcaaactttttattgaacctagcaagtataatctcttggacctcagtgtaaaacttctcagtatctgcaacagaaaccaaatcagcatga  23289800                         <---------ATHB12                                                          <-                   --------->ANAC58              --------->ANAC46                        --------->ANAC58                   --------->ANAC58      <---------YAB1                                  --------->ANAC58 ------->TEIL    ---------->DOF2      --------->GLK1(2)                               <-------TEIL<-- --->TEIL       <---------ARR14(2)   <---------ARR11(3)                         <------ZmHOX2a(2) <-- ---YAB1        --------->ARR14(2)   --------->ARR11(3)                  <---------GLK1(1)     <-----   atgtatgcagcaagagcagataagccaatgaagttgtgagattttgaatacacagaacaaaaactcaatcgctcgatttccgatcagattcaagctaatt  23289900                                   <---------HSFB2a(2)                                   --------->HSFB2a(2)                                   ------>ZmHOX2a(1) ---------DOF2                     --------->LBD16 -------ANAC58                    <---------LBD16                                 --------->YAB1    - -------ANAC58              <---------ATHB12                                   --------->MYB52(1)   < ----WOX13(1)--------->TOE2(3)--------->WOX13(1)                       <-----------ARR10     <-------   gctttagcatcttaacatcaattgtatgaaatcaatcctggaaactaaacagtcactactaaaaaaaccatcaaatctaaacaacgatagtgacagtagt  23290000                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                   <---------WOX13(1)                                                                                 --------->ATHB12<---                                                                          <---------bZIP60(2)   -----                                                                          --------->O2          -----                                                                          --------->bZIP60(1)  <-----                                                                          <---------O2         ------                                                                          --------->TGA1a      <-----                                                                          <---------bZIP60(1)  <-----                                                                          <---------TGA1a      <-----                                                                          <---------ANAC58     <-----                                                                          --------->ANAC55(2)  ------                                                                          <---------ANAC58  <--------                                                                          <---------ANAC55(1) <------        --------->DAG2         <-------TEIL                               <---------ANAC55(2)------>NtERF2       ---------->DOF2      <---------At4g35610                           <---------ANAC46  --------- <------ZmHOX2a(2)          --------->At4g35610                          ----------->STF1 ------>ZmHOX2a(1) -------->ARR11(3)       <------ZmHOX2a(2)                             ----------->TGA1   --------->At4g35610 ---------ARR11(3)      --------->ARR11(3)                          --------->ARR14(2)  ------>ZmHOX2a(2) --------AtSPL8         <---------ARR11(3)                          <---------ARR14(2)  =============   acgatctaataaagctggagattgaagatcagatgcaaggagattaccgagaagaagaccgtccatgtcgaatatgacgtgagtgattgatcctctgccg  23290100      --------->At4g35610      <---------At4g35610     ------>NtERF2     <---------RAP2.3(1)    <---------RAP2.3(3)    <---------RAP2.3(2)    <---------RAP2.6(2)    <---------ANAC46    <---------DEAR3(1)   --------->RAP2.6(3)   --------->ATERF1(1)  <---------ATERF1(1) ----------->TGA1 --------->ALFIN1 ----------->HVH21 -----------HVH21 ------NtERF2 -------->ATERF1(1) -------->At5g28300 --------DEAR3(2) --------ATERF1(1) --------MYB46(3) -------DEAR3(1) ----->ATERF1(1) ---NtERF2 -----ERF1 -----ATERF1(1) -----RAP2.3(1) ------ABI4(1) ->NtERF2                                              *TSS ---->LBD16                                           --------->ARR14(2) ----RAP2.3(3)                                        --------->GLK1(2) --->DEAR3(1)                                         <---------ARR14(2) ----DREB2C(2)                                       <---------ARR14(1) ----ATERF1(2)                                   ------->TEIL ----RAP2.3(2)                                  <---------ARR14(2) ----DEAR3(1) --------->ARR14(2)                --------->MYB52(1) --->ATERF1(2)<---------ARR14(2)              <---------MYB52(2) ---RAV1(1)  <------ZmHOX2a(1)             <----------ID1                                       <---- ---LBD16<------NtERF2                   --------->MYB52(1)                                     ----- -->HVH21--------->At4g35610             <---------DOF5.7(2)                     <-----------GT1----- ===================HOX2a_HOX2a        --------->DOF5.7(2)                 --------->MYB52(2)   <----   gcggtgacggctgcaggattcgacattgttgattcgataccgataacgacgaaccgaatccagtttcagtcggaagttagtttttacgctggagagtgat  23290200       <---------ANAC58       <---------ANAC58       <---------ANAC46       <---------ANAC55(2)       <---------ANAC55(1)       <---------ARR14(2)       ----------->GT1           ------->TEIL     <---------TGA2(2)           <---------ARR11(1)    ----------->TGA1             --------->ARR14(2) --------->ICU4               <---------ANAC58 -----TGA2(1)                 <---------ANAC58  <---------DEAR3(1) ---->TGA2(1)         <-------TEIL <---------ANAC46 <-------TEIL                            <-------- ---->bZIP60(1)   --------->DAG2<---------ARR14(1) <-----------HVH21               --------->ZAT14 -----bZIP60(1) ---------->DOF2 <---------CCA1(2)<---------DEAR3(2)                <---------ZAT14   gtcactatgacgtataacaaaaggttcatgggccgtatcttgtaaatgggccggttcacatagagagtagaagttttgctcatagtgaagagtgctaata  23290300                                                                                <XXXXXXXXXXXXXXXXXXXXMIR159A                                                                     <---------ANAC46                                                                    <-------TEIL<XXXXXXXXXXXXXXXXXXXXMIR159B                                                                  <---------ARR14(2)                                                                  --------->ARR11(1)                                                                  <---------GLK1(2)                                                                  --------->ARR14(2)                                                                ----------->ARR10<----------DOF2    - --------->ARR11(3)                                       --------->DAG2<---------ARR14(2)         -- -------AGL15   >>>>>>>>>EIN3  <---------YAB1            ---------->DOF2--------->ARR14(2)   --------   agagatgttgaaacttatacattggaactaaatatgtttagtcttcttctatacaaaataaaagtgaagattcgtatacagagcttttgttaatccaaag  23290400                                                  <---------At4g35610                                                <-----------RAV1(2)                                              <-----------HVH21                                       ==============================================MYC_MYB                                       <---------O2                                       --------->O2                                       --------->TGA1a             <---------AHL20(2)        <---------TGA1a      ------->GAMYB                    =================================MYC_MYB      ===========================================MYC_MYB     --------->MYB46(3)                <---------ANAC58                                  --------->ARR14(2)   --------->MYB52(1)                  <---------ANAC46                                  <---------GLK1(2)  --------->MYB46(3)                   <---------ANAC58         <---------MYB46(3)       <---------ARR14(2) ------>MYB46(1)       ------>ZmHOX2a(1)      ------>ZmHOX2a(1)<--------P               <------NtERF2 ------>MYB83<---------AHL20(1) <---------GLK1(1) --------->At4g35610        ------->GAMYB--------->GLK1(2) ---------->RAV1(1) ---------->ID1    <---------MYB52(1)     <---------MYB46(3)      <---------LBD16 ------->AtMYB61   <-----------GT1   <-----------HVH21      <---------ATHB12--------->MYB46(3) -->DOF2     --------->AHL20(2) <---------At4g35610 <---------YAB1        ----------->RAV1(1)     <--   accaacaacggccaaaaaatttttcctcttgtagagctccgtcgtgtccttcagatgattcaatggttgtttttagcaacagccttaggcggaatctctc  23290500                                                                                                    <                                         <---------At4g35610                                        -                                         <-------GAMYB              --------->ANAC46                <                                      <---------ZAT14            --------->MYB46(3)                 -                                      --------->ZAT14     <---------ATHB12                          -                               --------->HSFB2a(2)   ------>NtERF2  --------->ANAC58                <                               <---------HSFB2a(2)------>ZmHOX2a(1)<---------LBD16                 --                             ------>ZmHOX2a(1)    --------->At4g35610--------->LBD16            -----        --------->ANAC46   ==============================HOX2a_HOX2a--------->ANAC58        <-------- -------YAB1               ------>ZmHOX2a(2)      <---------At4g35610----------->GT1        ---------   attcttgtatacatcagaggctgaattgatcctctcgaactgcagttgattcctctgccactgaataaccacggaaaaatagaaaacaatcgaagtgtta  23290600              --------->ANAC58              --------->ANAC46              --------->ANAC58   <----------DOF2  ------>ZmHOX2a(2) <---------RVE1(1) <------ZmHOX2a(2) ---------ARR14(2)                                                                   <---------ZAT18 -------->ARR14(2)                                                               <---------ICU4 ---------ARR14(3)                                                             <---------ANAC55(2) -------->ARR11(3)                                                             <---------ANAC58 -------->ARR14(3)                                                             <---------ANAC58 ---------ARR11(3)                                                           <---------AHL20(2) ------->RVE1(1)                                 <------ZmHOX2a(1)           --------->AHL20(2)     - ----->DOF2   --------->ANAC55(1)     <---------ANAC58                    <---------ICU4 --------->ICU4 -ZAT6  <---------At4g35610           <---------ANAC58                   <---------AHL20(2)         - -->GT1 --------->At4g35610<-----------GT1      <----------ID1           --------->AHL20(2) <--------   aagatcttttagctacaagtaatctgttttaactccatttgcttaccaataggacaatgaagtatgttaactagattaattacttatggcacttatgaag  23290700  Previous    Next  AGI:  At5g57440.1    Description:  GS1 (GLYCEROL-3-PHOSPHATASE 2); hydrolase. similar to GPP1 (GLYCEROL-3-PHOSPHATASE 1), hydrolase [Arabidopsis thaliana] (TAIR:AT4G25840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43230.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402) Range:  from: 23288353    to: 23290155    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g57450.1    Description:  XRCC3 (Arabidopsis thaliana homolog of XRCC3); ATP binding / damaged DNA binding. Identical to DNA-repair protein XRCC3 homolog (XRCC3) [Arabidopsis Thaliana] (GB:Q9FKM5); similar to ATRAD51C (Arabidopsis thaliana Ras Associated with Diabetes protein 51C), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT2G45280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60498.1); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain DNA repair and recombination, RecA-like (InterPro:IPR016467); contains InterPro domain Rad51, C-terminal (InterPro:IPR013632) Range:  from: 23290319    to: 23292202    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version