Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->YAB1          <<<<<<<<<ARR2          <<<<<<<<<ARR1          <---------ATHB12 -------GAMYB<---------CCA1(2)                    <---------ICU4 ---->ZmHOX2a(2)        --------->YAB1           <---------YAB1 ------->MYB52(2)      <---------YAB1          --------->YAB1                      <---------ATHB12 --------MYB46(3)  <---------DAG2<-----------GT1 --------->ICU4          <---------ICU4 ----ZmHOX2a(2)    <----------DOF2           <-----------GT1            <---------ATHB12   atcgttgccacaatcatatcgctttattataggtttaacaattgatttttcattattttgttttcaatctccaaatcatttctcaataactctcaaacat  23184700                         <---------YAB1                 <----------DOF2                        --------->TOE2(3)            <-----------GT1                      <---------YAB1    <---------AHL20(2)              --------->TOE2(3)    --------->AHL20(2)<---------AHL20(2)            <-----------GT1 <---------YAB1  ----------->GT1       <----------DOF2<---------TOE2(3)--------->AHL20(2)         --------->MYB46(3)  ---------->DOF2    <-----------GT1   <---------AHL20(2) <---------YAB1 <---------ATHB12   tgtttaaagctttttttcttaattaacattataacaaaaaaataaatagagaaatttactttgattcaaacaccagtcattgtagattagccaagagttt  23184800                       <---------DAG2                    <-----------GT1                                     --------->HSFC1(2)              <---------DAG2 <---------AtLEC2                    <---------ANAC46              --------->TOE2(3)                         <---------ARR11(3)<---------ARR11(3)              --------->TOE1(3)                         --------->ARR11(3)--------->ARR11(3)           <-----------GT1 <---------YAB1              <---------GLK1(1)<---------HSFC1(2)          <   tcagtaacaaaatttaccttataaaccttttgaatggctatttctgaaatggaatagaaatctttagtcgtggaagtatctctatccataagaaaactcg  23184900                                                                 --------->ARR14(2)                                                        <---------ATHB12                                                 --------->TCP16(1)                              ----------->GT1    --------->PCF5  <---------GLK1(2)                            ----------->GT1      <---------PCF2--------->LBD16                           --------->DAG2        --------->TCP11(2)                      ---------->ID1             --------->AHL20(2)                 <---------TCP16(2)           <---------ANAC58     ----------->GT1      ---------->DOF2       <---------TCP15(2)           <---------ANAC58     <--   ---------->DOF2<---------ICU4               <---------ZAT18--------->HSFB2a(2)    <---------ANAC58 -----------GT1  <---------ATHB12          <-----------RAV1(1)<---------HSFB2a(2)    <---------ANAC58   ttttacaaagtaattttaaatcaatacaaaaagtgaaaaaatccactggtggaccccattcattccagaattgccgattacgagctatcttgtcccttct  23185000                                                                                          <----------                                              --------->AtMYB61                       <---------YAB1                                              <---------ALFIN1                   ----------->GT1                                             --------->MYB46(3)              --------->HSFB2a(2)      --------->At4g35610                  --------->ANAC46         *TSS     <---------HSFB2a(2) ---------GT1                        <<<<<<<<<TBF1             --------->ANAC46---------->DOF2   tcaccattcgctcactctctctctctctctctcgtcttcttcttcccaccactctctctgtttctccacaacttctcttctcaaagttaaaattacccct  23185100                                  <-----------GT1                  --------->ZAT6                              --------->AHL20(2)              <---------At4g35610                 ---                              <---------AHL20(2)        <-----------GT1                    <xxxxxxxxx                             --------->AHL20(2)      <---------MYB46(3)     --------->TOE1(3)     <--                      <---------ZAT14          <----------DOF2--------->At4g35610         ------>ZmHOX2a(1) -GT1                 --------->ZAT14 --------->ZAT14--------->MYB52(2)     --------->TOE2(3)    <---   aaaccaaaaaaaaaaaaaacgctcttcactatttatttactaaactctcctttgtttgttactaagctctcactaaaaccctaatctttctcctcttata  23185200             <----------DOF2    ----------->HVH21  --------->ANAC55(2)  <---------ANAC55(2)  --------->O2  <---------O2 ------>ARR11(3)                                                                --------->WRKY38(1) xxxxxxxxxxxxsmallRNA(si3)                                                      --------->WRKY12<<<<< -------ARR11(3)                                           <----------DOF2     <---------MYB52(1) ------CCA1(2)      ------>ZmHOX2a(1)            --------->WOX13(1)    --------->TOE2(3)  <----------DOF2   tatctcgtgactcttctttctcctccaatctctctctccctcttcacaaaccaattagcttctttctgtaaaacctcactcgttggccaattcttttggt  23185300                                                                                 ------>ZmHOX2a(1)                                                                                 ====================                                                                           <---------HSFC1(2)                                                                           <---------HSFB2a(1)                                                                           --------->HSFB2a(1)                                                                           --------->HSFC1(2)                                                                          <-----------ARR10                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                          --------->GLK1(2)                   --------->GLK1(2)                  --------->YAB1      <---------ARR11(3)                  <---------GLK1(2)                  --------->ICU4  --------->At4g35610                 --------->At4g35610                 <---------ATHB12<---------At4g35610           --      --------->ANAC46                        <----------DOF2   <---------MYB46(3) <----------DOF2 <- <<<<MYB2        <---------At4g35610      <----------DOF2  ------->TEIL  <---------GLK1(2)---------->DOF2   tttcatacacataaatctcagattccaaatgggttttcttagctctttctttcaaatgatgaacatttgttagcagaatcttcctctttccctaaagttt  23185400                                                                                  --------->YAB1                                                                                  --------->TOE1(3)                                                                                  --------->TOE2(3)                                                                                 <---------YAB1         <-----------GT1                                                        --------->ARR11(3)        <-----------GT1                                                         <---------ARR11(3)       <-----------GT1                        <---------TOE2(3)    <---------TOE2(3)  <----------DOF2                       --------->AHL20(2)         <---------TOE1(3) ------>ZmHOX2a(2)                     --------->AHL20(2)      <----------DOF2<---------YAB1 =======HOX2a_HOX2a                  ------>MYB46(1)        <------MYB83    --------->YAB1    ------- ------->ARR11(3)                    ------>MYB83     <---------ZAT14       <---------ICU4<---------AHL20(2) --------ARR11(3)           <-----------GT1 ---------->DOF2 <------MYB46(1)<---------YAB1 --------->AHL20(2)   tgatctttttttcccccttcaattttgtattttctcaccaaataaaaaaaggtttcttcagtgggttttaagggtttattattatcttaaaattaaacac  23185500                      --------->YAB1                    <---------ARR11(3)                    --------->GLK1(2)             ----------->GT1                                      --------->YAB1            --------->DAG2                                  <-----------GT1        --------->YAB1--------->TOE2(3)                 <---------ARR11(3)               <----------DOF2  <----------DOF2   --------->ARR11(3)                  --------->ARR11(3)   <---------AtMYB61      < -->ANAC46---------->DOF2                           ---------->DOF2   ---------->DOF2 <-----------GT1   aattctttaatcaaaaggcaaaaatcttaatttcatcactctcttctcactcacaaaagttcttacaatcttcaaagttttggtcttgtttcttttccga  23185600  Previous    Next  AGI:  At5g57180.1    Description:  CIA2 (CHLOROPLAST IMPORT APPARATUS 2). similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15544.1); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 23185068    to: 23187689    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version