Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->RAP2.6(2)                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                               <---------ZAT2                                                                               --------->ZAT2       <                                                                             ---------->CDC5    <----                                                                           --------->TOE2(3)    -----                               --------->LBD16                             --------->TOE1(3)    <---- --------->ZAT18          --------->ARR14(2)                         ------>ZmHOX2a(1)          ----- --------->At4g35610    ---------->DOF2              ---------->DOF2--------->TOE2(3)      <------ZmHOX2a(1) --->TOE2(2)         --------->TOE2(3)           ---------->DOF2 --------->ARR14(2)      <---------TOE2(3) --->TOE1(2)         --------->TOE1(3) --------->AtMYB61         <---------ARR14(2) --------->WOX13(1)   atgagcacaaaactgttcaaaaaccctaaatcccccaaaaaccaaaacccagaaagaaagtcaaacaaatcctaaaacctcagcagcaattaaggagaag  23178600                                                                        --------->ANAC55(2)                                    --------->ANAC58                    <---------ANAC55(2)         <                                    --------->ANAC58                    --------->ANAC58      <------ZmHOX2a(2)                                    --------->ANAC46                    --------->ANAC58<---------ANAC58 -----------------AGL1          <----------DOF2                     <-----------HVH21   <---------ANAC46 -----HSFB2a(1)              ------>ZmHOX2a(1)                  <------ZmHOX2a(1)      <-------TEIL - ---->HSFC1(2)           <---------ARR14(2)                     =====================================HOX2a_HOX2a -----HSFC1(2)           --------->ARR14(2)                  <-----------RAV1(2)      --------->ALFIN1 ---->HSFB2a(1)  <----------DOF2<---------DAG2       --------->MYB52(1) --------->ANAC46<---------ANAC58   tttccagcattggctccagctttagcagttcctcctttacgccaattgagaagacgaacagcatcaggagcatcacgcgagataccaagtgcgtcgatca  23178700         --------->ZAT18         --------->ZAT14         <---------ZAT14        --------->ANAC58        --------->ANAC58      <---------ANAC58      <---------ANAC46      <---------ANAC58     <------NtERF2   --------->ALFIN1  <-------MYC2  ------->MYC3  <-------MYC4  ------->MYC2  <-------MYC3  ------->MYC4  ------->PIF5  <-------PIF5                                               ----------->GT1  -------->ABF1                                              --------->ATHB12 <---------TGA1a                                             --------->YAB1  <------NtERF2 >>>>>>>>>>ABI5                                             --------->ICU4  ------>NtERF2 ==========================================MYC_MYB          <---------YAB1 --------->DEAR3(1) >>>>>>>>>>HY5                                        <---------LBD16      <---------DEAR3(1) >>>>>>>>>>AtMYC2                                    --------->MYB52(1)   --------->ATERF1(1) --------->ANAC55(2)                                ----------->HVH21     --------->RAP2.3(1) =============================bZIP_DOF            --------->ANAC58        <------NtERF2 =============================bZIP_DOF          ---------->DOF2          <---------RAP2.3(1) --------->TGA1a   <----------DOF2         <---------HSFB2a(2)           <---------ATERF1(1) <---------O2   <-----------------AGL1     --------->HSFB2a(2)          <---------DEAR3(1) --------->O2----------->HVH21        --------->TOE1(1)--------->ANAC58<---------ORA47(1) <---------bZIP60(2)           --------->At4g35610--------->ANAC58    --------->MYB52(1) <---------ANAC55(2)           <---------At4g35610--------->ANAC46   <---------SPL7 -----------------------TaNAC69(2)-------->P   <------ZmHOX2a(2)  --------->MYB52(1) ----------->OsbHLH66 ---------->DOF2 --------->TOE2(1)--------->ANAC58--------->SPL7    <------NtERF2   gacacgtggcgagcactgactctttaaggccgtagctacctcgttctcgatcaagcgacggaatgattaaacggacggcgacgaagtagtcggagggttt  23178800                                                                                                  <--                                                     <----------DOF2                             <---                      <---------ARR14(2)             <---------DAG2                    --------->At4g35610                    --------->LBD16                 <---------ANAC58                   <---------At4g35610                   --------->ANAC55(2)         <---------ARR14(2)                    --------->SPL7--                   <---------ANAC46            --------->ARR14(2)                    --------->ZAT18                  <---------LBD16           <---------TOE2(3)                        <---------ZAT18         --------->HSFB2a(2)            --------->At4g35610                   --------->CCA1(2)  ----         <---------HSFB2a(2)            <---------At4g35610    ----------------->AGL3<---------ZAT14        <---------ANAC46       ------>ZmHOX2a(2)    <---------ANAC58 ---------->DOF2 --------->ZAT14   gcagtaagtgtcgagaaacttgcggaatttggatcgtttctgagatgaggttttgcttttttgaatccagttaaagagagataccagtacgctgaatttg  23178900                                                                                           ----------                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           <---------ANAC58          <---------At4g35610                                                             <------NtERF2          --------->At4g35610                                                           <---------DEAR3(1)       <---------MYB52(1)                                                               --------->DEAR3(1)      <-----------HVH21    --------->YAB1         <-------GAMYB       <---------ANAC46 <---------At4g35610      <-----------TGA1 <------NtERF2    --------->LBD16              <-----------------------TaNAC69(2)     --------->ANAC46 --------->LBD16  <---------HSFB2a(2)          --------->MYB52(1) --------->At4g35610   ------>ZmHOX2a(1)  <---------RAP2.6(3)        <---------MYB46(3)----------->TGA1 <---------ZAT2  < -------GLK1(1)      --------->LBD16   <---------ANAC46   --------->LBD16           <---------At4g35610 ------ARR11(3)      --------->ETT(1)  --------->HSFB2a(2)----------->GT1           --------->At4g35610 ---->ZmHOX2a(2)    <---------LBD16   <---------LBD16--------->WOX13(1) *TSS--------->GLK1(2)   <---- ----->ARR11(3) <----------DOF2 <---------GLK1(2)----------->GT1   ----------->HVH21--------->ZAT2  <   atctcctccgtcatcttactttgccggaattatagattcttccggagaagatggttaatcagggaaatagtgacggagaatcactgagcagcggcgtgaa  23179000                                       ----------------->AGL1       <------NtERF2                   <-----------------AGL1     --------->ETT(1)                  <-----------------AG     <---------ANAC46                  <-----------------AGL2    <---------At5g28300    ----------------->AGL1           --------->DEAR3(1)  ------>MYB46(1)    <-----------------AGL1        <---------AtLEC2 ----------->ARR10    <---------LBD16         --------->DAG2 <---------ARR14(2)--------->ANAC58 ->GT1--------->LBD16      ---------->DOF2 --------->ARR14(2)--------->ANAC58 ---------ANAC58    <---------ANAC46--------->ANAC46     ------>MYB83 --------CBF        <---------ANAC58--------->ANAC58 <---------ARR11(3)                 --------->ANAC46 ---------ANAC58    <---------ANAC58--------->ANAC58 --------->ARR11(3)           ---------->ARF1 <--   ttgcttgccggagaaggaagtcgcgtttgaaaagttgcacggccggttttggtaagacctgccaagttacagtgactcggtcttctctcccagtaactat  23179100                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                                <---------AHL20(2)                                   <---------ATHB12            --------->YAB1                                 --------->WOX13(1)     <---------ZAT14                                --------->AHL20(2)      <---------ZAT18                     ----------->GT1 --------->WOX13(1) --------->ZAT18                     ------>ZmHOX2a(1) <---------ATHB12 --------->ZAT14                   <----------DOF2        <-----------GT1     --------->AHL20(2)  >>>>>>>>>>>>>>>>>LFY              ---------->DOF2 -------AHL20(2)  ---------->ID1<---------AHL20(2)    --------------->AtSPL8   --------->TOE2(3)   ttattctatattacacatttgtcctgtaacttaattaatcaatcaattcagtccaatgtgtactatattaatttagaaaatcgtcaaagtggatttatgg  23179200                                                                       ----------->HVH21                                                                     =============================bZIP_DOF                                                                     --------->TGA1a                                                                     --------->O2                  <---------ZAT14                                    <---------TGA1a                  <---------At4g35610                       <---------CCA1(2)               <---------At4g35610                       <------ZmHOX2a(2)               --------->At4g35610                      <---------ARR11(3)      <---------AHL20(2)                                --------->ARR11(3)     <---------AHL20(1)   <---------------AGL15     <---------YAB1   <---------O2               <----     <---------AHL20(2)   --------------->AGL15   <---------ICU4 --------->ANAC58               -----     --------->AHL20(2) <-----------GT1           --------->YAB1 --------->ANAC46           --------- --------->REM1(1)<------NtERF2                  --------->ICU4  --------->ANAC58      ---------->DOF2   gctacaatttttttttgggctgcagtttacatttttagtagtattgacaaaattatgagatcatatcacacaagtgacaaactaggcccaaaagcagttt  23179300        --------->ARR11(3)        <---------AHL20(1)        <---------ARR11(3)        --------->AHL20(1)        <---------AHL20(2)             <---------AHL20(2)  --------->ANAC58                  <---------AHL20(2)  --------->ANAC55(2)               --------->AHL20(2)  <---------ANAC55(2)              <---------YAB1     <---------At5g28300                        ----  --------->ANAC46       ----------->GT1  <---------TOE2(3)                                      <---  --------->ANAC58       <------MYB46(1)  <---------YAB1                 --------->ANAC58       <---- -----AHL20(2)           <------MYB83  <---------ATHB51    <----------DOF2   --------->MYB52(1)<----- ---->AHL20(2)  <----------DOF2  --------->AHL20(2)  <-----------GT1     --------->ANAC58      ------ -->GT1 --------->AHL20(2)       --------->YAB1   <---------ICU4   --------->ICU4             -------   aaatacgaaatatattggctttgagggaggtaaaattataaattatggttcagaattacagcttttgaaatgaataagcaaacagttctaacccaaatat  23179400                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                      --------->DAG2                                                                ---------->DOF2                                                          <---------At4g35610 ----->YAB1                                               --------->At4g35610 ------ICU4                                               <---------ATERF1(1) -----YAB1                                               <---------DEAR3(1)               <---------MYB52(2) ----ARR11(3)              ---------->DOF2         ---------->DOF2   ---------->DOF2    <-----------GT1 --->ARR11(3)       <----------DOF2           ------->GAMYB  ------>NtERF2             --------->AHL20(2) -->YAB1   --------->ARR14(2)       ------>ZmHOX2a(2)  <-----------HVH21       ---------->DOF2   cattacaaggttgaattcgcctcttttcagaaagttgatccattgtaaccgaagaaaggtcgctgccaaagaaaagcaaaacaaagaatttaactaacat  23179500  Previous    Next  AGI:  At5g57160.1    Description:  ATLIG4 (ARABIDOPSIS THALIANA DNA LIGASE IV). Identical to DNA ligase 4 (LIG4) [Arabidopsis Thaliana] (GB:Q9LL84;GB:Q9LU70); similar to ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1), ATP binding / DNA ligase (ATP) [Arabidopsis thaliana] (TAIR:AT1G08130.1); similar to ATP dependent DNA ligase family protein [Arabidopsis thaliana] (TAIR:AT1G49250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69582.1); similar to DNA ligase IV [Populus nigra] (GB:BAF03051.1); similar to hypothetical protein OsI_016691 [Oryza sativa (indica cultivar-group)] (GB:EAY95458.1); contains InterPro domain ATP-dependent DNA ligase, conserved site (InterPro: Range:  from: 23172191    to: 23178972    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g57170.1    Description:  macrophage migration inhibitory factor family protein / MIF family protein. similar to macrophage migration inhibitory factor family protein / MIF family protein [Arabidopsis thaliana] (TAIR:AT5G01650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69584.1); contains InterPro domain Tautomerase (InterPro:IPR014347); contains InterPro domain Macrophage migration inhibitory factor (InterPro:IPR001398) Range:  from: 23179298    to: 23180506    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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