Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ------->GAMYB                                        <---------MYB52(2)                                        --------->MYB46(3)                                   --------->ANAC58                              <xxxxxxxxxxxxxxxxxxx                                   --------->ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <---------ARR11(3)                    ------->TEIL  --------->TOE2(3)                           --------->ARR11(3)               <---------ANAC46  --------->At4g35610                           <---------ARR11(1)               <---------ANAC58  <---------At4g35610                           --------->ARR14(2)        ------->GAMYB --------->TOE2(3)         --------                           <---------ARR14(2)     ----------->RAV1(1)     <-----------HVH21  -------- -------ZAT14             <---------CCA1(2)------->TEIL<---------GLK1(2) --------->WOX13(1) <-------- -----YAB1              --------->YAB1--------->MYB52(1)    <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxx   tatacttcatggtttcaactaaaccatcatatcttgaaggcaacgaacttagcaacagaattgcttgaacctcatcagtcacctcaatctgcaaatgatt  23156200      --------->RAP2.6(2)      ----------->RAV1(1)<---------YAB1    --------->At4g35610 --------->TOE2(3)   --------->ANAC46    --------->YAB1                                                        <------- xxxxsmallRNA(i2)     <---------ATHB12       <---------ANAC58                          ---------->DOF2 >HAHB4               --------->ICU4         <---------ANAC58   ---------->DOF2 <---------At4g35610 ->ATHB12    <----------DOF2  <---------GLK1(2)           ------->TEIL          --------->At4g35610 -ATHB12  --------->GLK1(2)   --------->ARR14(2)     <---------ANAC58           <---------ZAT2      < xsmallRNA(le3)  <---------TOE2(3)<---------YAB1     <---------ANAC58           --------->ZAT2     <-   caaatcagccacaatctttaagaaatcatcaatattctcatcgattttcttgttttcttgcatcttaaaagtatagaaacttagctgagtaaagactcta  23156300                                                --------->At4g35610                                                <---------At4g35610                   --------->ARR14(2)                                          --------->HSFC1(2)                     --------->ARR11(3)              --------->YAB1              <---------HSFC1(2)                     <---------ARR11(3)             <---------ATHB12            --------->ANAC58               <----------DOF2            <-        <------ZmHOX2a(2)            <---------HSFB2a(2)               ============================== --------AGL15<---------ICU4     <---------GLK1(1) <---------ZAT14     ------>ZmHOX2a(2)           <- ---------ANAC46                <---------ZAT6 <-----------RAV1(1)   --------->ARR11(3)        ------ --------TOE2(3)    --------->MYB46(3)   --------->ANAC58            <---------ARR11(3)     ---------   tgaggtagagatcgaatcatgaacaatcgatctagagttccccaagcttctgctgcagtttgacatagctcgatctttcttaagaccttatctgcaacat  23156400                                                                                      xxxxxxxxxxxxxxx                                                                                 ------>ZmHOX2a(2)                                                                                --------->HSFB2a(1)                                                                                --------->GLK1(1)                                                                                <------ZmHOX2a(2)                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <---------ARR11(3)                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                               --------->ARR11(3)                                                                               <---------ARR14(3)      <------ZmHOX2a(2)                                                        <-----------ARR10     --------->ARR11(3)                                                        <---------ARR11(1)     <---------ARR11(3)                                                        --------->ARR14(3) <------ZmHOX2a(1)                                <---------At4g35610         <---------ARR14(1) --------TOE2(3)                                  --------->At4g35610        --------->LBD16 =======HOX2a_HOX2a                               ----------->RAV1(2)      <---------LBD16     ------ --------TOE1(3)   <----------DOF2 --------->ANAC58                      <-----------GT1 <<<<<<<<<TBF1 --->TOE2(3)       <---------DAG2  --------->ANAC58          <---------CCA1(2)<---------CCA1(2)<----- -->RAV1(1)    ---------->ID1   --------->WRKY18(1)    ------->TEIL <----------DOF2   <<<<<<<<<TBF1   taaggaagatcacattcttcgctttatcacatcgctcaagccttgctgcatcatctgcatctcgtttcttctttttctccggatcttcttcttcttctgc  23156500         --------->ARR14(2)         <---------ARR14(2)        --------->ATERF1(1)        <------NtERF2       --------->LBD16       <---------ATERF1(1)      <---------DEAR3(1)      <---------ANAC46     <---------LBD16     --------->ATERF1(1)                                                                          ---     <------NtERF2                                                                           ========    <---------RAP2.3(1)                                                                      ========   <---------RAP2.3(2)            ------>ZmHOX2a(1)                                          ========   <---------DEAR3(1)            --------->TOE2(3)                                           ------>ZmHOX2a(1)  <---------At4g35610            --------->TOE1(3)  ----------->ARR10                      ----------  --------->At4g35610         <---------ARR11(3)   xxxxxxxxxxxxxxxx>smallRNA(i)        <---------ARR11(3) xxxxxxx>smallRNA(s2)  ----------->HVH21    ----------->HVH21                          --------->ARR11(3) --->ZAT14           <---------At4g35610    <---------ATHB12                     ----------->GT1 ==== ----ZAT14           --------->At4g35610    ----------->TGA1     <---------YAB1---------->DOF2   ----   agtgagcggcggagacgatgttccgatgacaacatccttaagtccaatgacgcttagatgtgccataatccttgttttccacaaagaaaaatctcctgat  23156600                                  <---------GLK1(2)                                  --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       ------>ZmHOX2a(1)                    XXXXXXXXXXXXXXXXXXXX>MIR845A                  <---------GLK1(1)--------->CCA1(2)       --------->At4g35610              ================HOX2a_HOX2a                  <---------ZAT2             <------ZmHOX2a(2)    <---------ARR14(2)       <---------At4g35610             =================HOX2a_HOX2a                  XXXXXXXXXXXXXXXXXXXXX>MIR845B       <------ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            -------       =======================HOX2a_HOX2a          ------->GAMYB                   ------>ZmHOX2a(2)      --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------MYB59      <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 --------->CCA1(2)     --------->YAB1<---------ARR14(2)             <---------MYB111(2)             <------ZmHOX2a(2)  ---------->DOF2 --------->GLK1(1)--------->ARR14(1)   <---------MYB52(1)       <---------ARR11(3) ------>WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxx ===================HOX2a_HOX2a   --------->ARR11(1)   <-----------HVH21         <---------AGP1 ====================HOX2a_HOX2a*TSS<-------TEIL  --------->MYB46(3)             --------->AGP1 =============HOX2a_HOX2a   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <-----------ARR10 ->RAV1(2)<---------YAB1  --------------------->WRI1  ------->GAMYB              --------->ARR11(3) =============================HOX2a_HOX2a         <---------MYB55(2)         ---------->DOF2 <xxxxxxx -->ZmHOX2a(2)------>ZmHOX2a(2) ----------->ARR10 <---------MYB52(2)------------>CBFxxxxxxxxxxxxxxxxx   ccatcaaagatcacgatcggagttcctgccatcttagattcgcactcgctcaacaaccgtgagctctgataccaatttgtaaagatctaacttcacttca  23156700                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ANAC46                                           --------->At4g35610           --------->ANAC58                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->TOE1(2)                               ---------->DOF2                         <----   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxx ----->CBF --------->ANAC58      --------->GLK1(2)  ---------->DOF2 --------->DAG2         <xxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->DOF2      <-----------GT1 xxxxxxxxxxxxxxxxsmallRNA(i2)--------->YAB1 --------->YAB1    ---------->DOF2       --------->GLK1(2) xxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   atctcacaaacacacgaatcaacttcagcactaagaatcgaattgatcagaactgaaagaaagtaaaagaaaagctgaacacagagaatttaacgagttc  23156800                            <------NtERF2                          --------->DEAR3(1)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                  <---------ANAC55(2)                  --------->ANAC55(2)                  --------->REM1(1)                  <---------O2                  <xxxxxxxxxxxxxxxxsmallRNA(s)                  --------->O2           --------->LBD16                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->ANAC58           --------->ANAC46             --------->ANAC58   <---------ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(i)  <---------LBD16         --------->LBD16 <---------LBD16--------->HSFB2a(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ARR14(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ARR14(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->GLK1(1)       <---------LBD16   <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------GLK1(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------HSFB2a(2) -----DOF5.7(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <<<<<<<ZML2                           <-------- xxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR14(2)    --------->ARR11(3)                   <xxxxxxxxx xxxxxxxxxxxxxsmallRNA(se3)--------->LBD16 --------->ARR14(2)                       <----------DOF2--   acgttccaaaccggaacgctacgtctcgccggagaaacctctccggaaatccactagaacttggaaacttagtctctgttacaatgctttcaagctttct  23156900                                                   ------->GAMYB                                                  --------->ANAC58                              ------->GAMYB       --------->ANAC58          ------>ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      --------->ANAC46       <------------MYB.PH3(2)                                     <xxxxxxxxxxx    <---------ALFIN1         <---------MYB52(2) --------->MYB52(1)                    <xxxxxxxxxxxxxx   <---------ZAT14       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->CCA1(2)   --------->ZAT14      ------>ZmHOX2a(2)    <------ZmHOX2a(2)             <---------ARR11(3)   <---------ZAT18--------------------->WRI1<---------ARR14(2)             <---------ARR14(2)      <x --DOF2   =====================HOX2a_HOX2a  --------->ARR14(2)             --------->ARR11(3)     --- xxxxxxxxxxxxxxsmallRNA(se3) --------->MYB46(3)----------->HVH21     >>>>>>>>>TBF1 <-------TEIL   <xx ------->ZAT6     <----------DOF2         --------->LBD16         >>>>>>>>>TBF1----------->GT1<------   ctcactacactcctctctctctttgatctcaacaaactcttatcccgatctaacggaattacagagaagaagaagaagatatagttacatagctcatgcg  23157000                                                                              <-------MYC2                                                                             ======================bZIP_DOF                                                                             --------->O2                                                                             <---------TGA1a                                                                             --------->TGA1a                                                                             <---------ANAC46                                                           <----------DOF2   <---------ANAC55(2)                                                 ------->MYC3             ----------->HVH21                                                 ------->MYC2             xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 <-------MYC2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 <-------MYC3xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                --------->TGA1a           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <---------O2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                --------->O2xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <---------TGA1a          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                --------->ANAC55(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <---------ANAC46   <---------At4g35610                                                ======================bZIP_DOF<-------MYC3                                                ======================bZIP_DOF------->MYC3                                              <---------ALFIN1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC55(2)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------O2                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <---------ZAT2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      --------->At4g35610  ============================bZIP_DOF                                      --------->ZAT2   <---------YAB1    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    xxxxxxxxxxxxxxxx>smallRNA(s)   --------->At4g35610          -----                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <----                              ============================bZIP_DOF --------->ZAT2          <xxxxxxxxx            <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------->MYC2<xxxxxxxxxx          <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ALFIN1<xxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ANAC55(2)<---------ZAT2       <----------DOF2         --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ANAC58    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <----       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxx       ---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)   -----       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxx      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxx    --------->AtMYB61       xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)<---------YAB1 -- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------At4g35610 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx xxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxx xxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC58 xxxxxxxxxxxxxx ------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)-- xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58xxxxxxxxxxxxxxx ---------------WRI1      <---------YAB1 --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxx   aaaagaccaaaacgccctcaagcttgttatgactttagtcagctcgcctcacgtgttatgactttagtcagctcgcctcacgtgttatgactttagtcag  23157100  Previous    Next  AGI:  At5g57126.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 23152751    to: 23156632    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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