Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------YAB1                                                                                     --------->AHL20(1)                                                                                     <---------AHL20(2)                                                                                    <---------ICU4                                                                                    --------->ATHB51                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                                   --------->ICU4                                                                                   <---------------AGL15       ------->GAMYB ---------->ID1                                               <-----------------AGL1      <---------MYB52(2)                                                        --------->AHL20(2)      --------->MYB46(3)   <----------DOF2   <---------ZAT14                    <---------AHL20(2)  -   tggtatcaacaaacttgaaatttgtctctctttttttttcttcagtctgaactacttctcccatggtttactgaaactgagtttaattattttggcaatg  23094100                                                                           --------->ALFIN1                                                                         <---------TGA1a                                                                         <---------O2                                                          =========================bZIP_DOF                                                          ---------->DOF2--------->O2                                                       ----------->GT1   <---------ANAC58                                                  --------->LBD16        <---------ANAC58             <----------DOF2                --------->WRKY12             --------->TGA1a            <---------ANAC58                --------->WRKY38(1)          <---------ANAC46            <---------ANAC58                ----------->HVH21     --------->ZAT6 -------->ICU4                              --------->WRKY45   <---------WRKY38(1)   caattttggattttgcttttagtttcacttgtgttctctgagagagttgaccctgagaagtaaagtcaacactagacgtgtgcgagtttcaatggactgc  23094200                                                                                                    <                                                                                               <-----                                                                                            ------>ZmHOX2a(1)                                 --------->YAB1                                            <---------MYB59                 --------->At4g35610                          xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-----   --------->MYB59               <---------ANAC46      ---------->DOF2           <---------DEAR3(2)--   atttttaggtccaagaagtagctacggcccatctatcgtagaagttgttttttgtactaaagcctgttatagccgaactaggtcgctacgtttcctaact  23094300                                  ------>MYB83                                  ------>MYB46(1)                                     --------->LBD16                                 --------->WOX13(1)                                  --------->ANAC46                                --------->AtMYB61                                    <---------------AGL15                                --------->MYB46(3)                              --------->KAN4(2)                                <---------ALFIN1              --------->DAG2   <---------MYB46(3)                           --------->ANAC58       <<<<<<<<CAMTA3              <--------P   --------->YAB1 ---------ANAC46           --------->ANAC58     --------->ANAC58             <---------ANAC58 ----ANAC58                --------->ANAC46     --------->ANAC46    <---------MYB59  --------------->AGL15 ----ANAC58       --------->AHL20(2)    <---------ARR11(3)   ---------->DOF2 <---------ANAC58      <- -------->ID1  <----------DOF2------->TEIL      --------->ANAC58 <------ZmHOX2a(1)  -----------------   tgtcgtttattaggctacttttaaatcgcacgcaccaatccagttcttacacgcgttttcacaaaaaggaccttacatgggttgttcccccaataagaaa  23094400            --------->GLK1(2)           <---------GLK1(2)           <---------ARR14(2)    ------->MYC3                                                                                <----    <-------MYC3                                                       --------->ICU4           <----   --------->ANAC46                                <----------DOF2--------->ANAC58             ------   <---------O2            xxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->ANAC46           <------- ----------GT1        <---------AtMYB61          ---------->ID1   --------->ANAC58 <-----------GT1 >AGL1     --------->ARR14(2)               ------>ZmHOX2a(1)     --------->bZIP60(2)      *TSS<-----   attacacgttgcagaatcgaagcagtggtctatccttgttatcgtcctctcgtctttatggctcttccaagtcattttgagaaattttcgattttgagat  23094500        <---------ICU4  <---------ICU4 <-----------GT1       <---------AHL20(2)  <---------ANAC58 -----CCA1(1)          --------->AHL20(2)  <---------ANAC58 -----RVE1(1)          --------->ICU4<----------DOF2                         <---------ANAC46 --->ARR11(3)          <---------ATHB51   <---------At4g35610        <<<<<<<<<<<<<<<<<LFY --TOE2(3)        ----------->GT1  ------>ZmHOX2a(1)               --------->AHL20(2)---------------- ----ARR11(3)  ---------->DOF2<---------GLK1(2)      --------->TOE2(3)       <---------REM1(1)     <X   ttttttccaaatattacaaaaggaaataattagattcctctttctgcttgctataccttgatagaacaatataacaatggtgtaagtcttctcgctgtat  23094600                                                                          <---------MYB52(1)                                                                         <---------RAP2.6(3)                <------ZmHOX2a(1)                                        <-----------HVH21              ----------->GT1                                           --------->ANAC55(2)             <------ZmHOX2a(1)                                      <---------GLK1(1)    <---------AHL20(2)                                            <---------ICU4    --------->ATHB51         <-------GAMYB                 <-------GAMYB--------->ANAC46    --------->ATHB12        <-----------RAV1(1)           <---------DEAR3(2)    --------->AHL20(2)    --------->ALFIN1                <---------MYB46(3)                  -------   <---------AHL20(2)   <---------ANAC58                 <---------ANAC46<-----------TGA1     <------   --------->ICU4       <---------ANAC46                 <---------DEAR3(1)                   <------ ------->TaNAC69(2)     <---------ANAC58<------ZmHOX2a(1)<---------RAP2.6(2)                  ------- XXXXXXXXXXXXXXXXXXXXMIR830*--------->ALFIN1           ------------>AtMYB77          <---------HSFB2a(2)   tcgaaattatttggaggaggaaaatggagtgtgttggggctaggaatttcgcagcaatggcggtttcaacatttccgtcatggagttgtcgaaggaaatt  23094700                                                                           --------->HSFB2a(2)                                                                          <---------LBD16                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                       <---------HSFB2a(1)                                                                       --------->HSFC1(2)                                                                       <---------HSFC1(2)                                                                       --------->HSFB2a(1)                                                                      ----------->ARR10                                                                      <---------HSFB2a(1)                                                                 <------NtERF2                                                                 --------->RAP2.3(1)                                                                 <---------LBD16                                                                 --------->ATERF1(1)                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                <---------DEAR4(2)                                                                <---------RAP2.3(1)                                                                <---------ORA47(2)                                                                <---------RAP2.6(1)                                                                <---------RRTF1(1)                                                                ------>NtERF2<---------MYB52(1)                                                                <---------ATERF1(1)                                                                <---------ERF1                                                               <---------RAP2.3(3)                                                               <---------ANAC46                                                               --------->ATERF1(2)                                                               <---------ATERF1(2)                                                               <---------RAP2.6(2)                                                               <---------DEAR3(1)                                                               <---------RRTF1(2)                                                               --------->DEAR3(1)                                                               <---------RAP2.3(2)                                                               <---------RRTF1(3)                                                               --------->ALFIN1                            --------->KAN4(2)                 <---------ABI4(1)                            <---------ARR14(2)                --------->RAP2.3(1)                            --------->ARR14(2)                <------NtERF2<---------HSFB2a(2)                           <---------KAN4(1)                 <---------ATERF1(1)                           <---------HSFC1(2)                <---------RRTF1(1)                           --------->HSFB2a(1)               <---------RAP2.3(1)                           <----------TaMYB80          --------->ZAT2 --------->HSFB2a(1)                           <---------HSFB2a(1)        --------->AGP1<------NtERF2                ----   <---------MYB46(3)      --------->KAN4(1)     <-----------HVH21<---------ANAC46               <--- -->HSFC1(2)              <---------KAN4(2)     <---------ZAT6--------->ATERF1(1)         <---------ANAC46 ---HSFC1(2)            <------ZmHOX2a(1)   <---------ZAT14 <---------DEAR3(1)          <---------ANAC46 ---HSFB2a(1) <-------TEIL---------->TaMYB80--------->ZAT14 <---------RAP2.3(2)  <---------ZAT6<----- -->HSFB2a(1)--------->CCA1(2)         <---------MYB52(1) --------->MYB52(1)--------->LBD16<---------ZAT14   tccagtggttaagagatacagctataggaatattcgtttcggtttgtgtagtgtcagagctagcggcggcggaagttccggtagtgagagttgtgtagcg  23094800                         <---------ARR14(2)                         --------->ARR11(3)                         <---------ARR11(3)                         <---------ARR14(3)                                        --------->CCA1(2)               ------>NtERF2                --------->ARR14(2)                    <---------ARR11(3)              --------->WRKY12           <---------AtMYB61                        --------->ARR11(3)              ----------->TGA1        --------->ALFIN1                            --------->ARR11(1)            <---------At4g35610     <---------ZAT2  --------->GLK1(2)             --------->ARR14(2)       <---------ARR11(3)<---------GLK1(2)<---------MYB46(3)                      <---------ARR14(2)       --------->ARR11(3)--------->ARR14(3) <---------ARR14(2)                  ----------->ARR10 ----->At5g28300       ----------->ARR10<---------MYB52(1)             --------->At4g35610 --------HVH21----------->HVH21     <---------At4g35610                <---------At4g35610 ----ANAC46 --------->At4g35610  ---------->DOF2   <---------GLK1(2)  ----------->RAV1(1)   gtgagagaagatttcgctgacgaagaagattttgtgaaagctggtggttctgagattctatttgttcaaatgcagcagaacaaagatatggatgaacagt  23094900                                                                                   <---------YAB1                                   <---------ANAC58                  <---------ANAC46                              <---------ANAC58                    <---------MYB52(1) >>>>>>>>>ARR2                              <---------ANAC58          --------->MYB46(3)   <---------TOE2(3)              --------->ARR11(3)   <---------ANAC58   --------->ANAC46    --------->ICU4   ctaagcttgttgataaggtctgtttcaatgtcccttgccttgtttatgaagaaaacaaaccactattcgttgtgtatttatggatttgattgtggatttt  23095000  Previous    Next  AGI:  At5g57020.1    Description:  NMT1 (N-MYRISTOYLTRANSFERASE 1). Identical to Glycylpeptide N-tetradecanoyltransferase 1 (NMT1) [Arabidopsis Thaliana] (GB:Q9LTR9;GB:Q9M6E3); similar to N-myristoyltransferase-related [Arabidopsis thaliana] (TAIR:AT2G44175.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45669.1); similar to Myristoyl-CoA:protein N-myristoyltransferase [Medicago truncatula] (GB:ABN09113.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65324.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain Myristoyl-CoA:protein N-myristoyltransferase; (InterPro:IPR000903) Range:  from: 23092093    to: 23094127    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g57030.1    Description:  LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase. Identical to Lycopene epsilon cyclase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q38932;GB:Q9LDV8); similar to LYC (LYCOPENE CYCLASE), lycopene beta cyclase [Arabidopsis thaliana] (TAIR:AT3G10230.1); similar to putative lycopene epsilon cyclase [Daucus carota subsp. sativus] (GB:ABB52073.1); similar to lycopene epsilon-cyclase [Citrus unshiu] (GB:BAE93359.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65322.1); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); contains InterPro domain Lycopene beta and epsilon Range:  from: 23094491    to: 23097279    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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