Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                          <------ZmHOX2a(1)                     -----                                                        <---------TOE2(3)                   <--------                                                   --------->ATHB12                      <---------ANAC55(2)                                                  --------->ICU4                       --------->YAB1                                                  <---------YAB1                       <---------ICU4                                                --------->YAB1                        <---------ATHB12                                               <---------YAB1                       --------->WOX13(1) ------>DOF2                 --------->ZAT18   --------->ICU4                     <-------TEIL  <----   aaagaatgctacaatctctctgtattcaaggggcacagagaatggtttgatgatgattaaggagttggaatctatgtctaaaggttcaatcatgtgtcag  22993200                                                          --------->AHL20(2)                                                          <---------AHL20(2)                                                         <---------YAB1     <---------AHL20(2)                                <---------ICU4  ----------->GT1                                     --------->ICU4 --------DOF2                                         <---------YAB1     <---------MYB52(1) ---->At4g35610                                  --------->TOE2(3)      <----------DOF2 ---HVH21                         --------->ARR11(3)--------->YAB1     --------->TOE2(3) -----At4g35610                 <-------TEIL   ------->TEIL---------->DOF2   cttttagttaaattttaaaattctctccatgaaatacatcttggatttgaaccttgataattaaagtctcaaacctttaggtgtttacagagaaacagag  22993300                                                                                                -----                                                                                               <-----                                                                                      --------->ARR11(3)                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2) <                                                                                --------->AHL20(2)  -                                                                                <---------AHL20(2)<--                                                                            --------->AHL20(2) ------                                                                            <---------AHL20(2) ------                          <----------DOF2                               --------->AHL20(2)  ---------                 <---------YAB1                                         --------->AHL20(1)-----------           --------->ARR11(3)   >>>>>>>>>MYB98                          <---------AHL20(2)--------->ANAC58           <---------ARR11(3)  <-----------GT1    <-----------GT1       <---------AHL20(1)--------->ANAC58          --------->GLK1(1)   <-----------GT1------>ZmHOX2a(1)   <-----------GT1--------->YAB1 <-----   tcgatggaacagagttcttatgagtttcctttttaacatactgtttcctattttactctctctgttttctctattttattaattaaaatatcaagaaaat  22993400                       ========================HOX2a_HOX2a                      <------ZmHOX2a(2)                     --------->ARR11(3)                     <---------ARR14(3)         --------->YAB1------>ZmHOX2a(2)         --------->TOE2(3)    <---------AHL20(2)=========================HOX2a_HOX2a   --------->YAB1    <---------ARR11(3) ---->AHL20(2)       --------->ARR14(3) ----AHL20(1)        --------->ARR14(2) ---------AHL20(2)   --------->AGP1 -------->AHL20(2)   <-----------ARR10              --------->ANAC58                      <----------DOF2 ---------TBP        <---------AGP1                 --------->ANAC58                 <----------DOF2 --->ARR11(3)        <---------ARR14(2)            --------->DAG2                  <---------HSFC1(2) --->AHL20(1)       <---------CCA1(2)             ---------->DOF2           ----------->TGA1 >AHL20(2)          <---------ARR14(1)        <---------TOE2(3)             ----------->HVH21 >GT1  <---------TOE2(3)                    ---------->DOF2         <-----------GT1--------->HSFC1(2) ----ARR11(3)   --------->MYB52(1)      <------ZmHOX2a(1)     <---------TOE2(3)   ------->TEIL   atttatattaatgttaactagcagatcttatataagagtcgaggattaaaggaaaagcaaaactagggttttacttctctgacgaagcttttctttttct  22993500                                                <------------CBF                                               --------->ATHB12                                        ------->TEIL                                        <---------ARR14(2)                                        <-----------ARR10                                        --------->ARR14(2)                                       <---------ARR14(1)                 <---------TOE2(3)     <---------CCA1(2)                 <---------TOE1(3)   <---------ANAC58     --------->ZAT2                  <---------ANAC58     <---------ZAT2                  <---------ANAC46                                              <-     --------->At4g35610          <----------DOF2     <---------DEAR3(1)                           --     <---------At4g35610      <---------ALFIN1<---------YAB1         --------->ATHB12          <-----   <-----------RAV1(2)    <-----------GT1    <---------TOE1(2)--------->At4g35610            <------- <-----------HVH21       <-----------GT1<---------ARR11(1) ---------->DOF2                   --------   actagtcagctgaaaaattagggtttttttcccctcctttcgtatcttacgattgggcgatgaaagctccaagattgggaagtgaagaggtttcatattc  22993600                ----------->RAV1(2)                --------->ANAC55(2)               -------->P              <-----------GT1            <---------ANAC58            <---------ANAC58       ----------->GT1       --------->MYB52(2)    <----------DOF2   <------ZmHOX2a(1)        <---------ANAC58 --------ARR14(2)     --------->ATHB12                    --------->ANAC58 ------->ARR14(2)    <---------YAB1                       --------->ANAC46 ----LBD16<-----------GT1   <---------ANAC58        --------->YAB1 --ARR14(2) <---------ANAC55(2)      <---------ARR14(2)   --------->ANAC58  --------->ANAC58 ->ARR14(2) --------->ANAC55(2)      --------->ARR14(2) ---------->DOF2     --------->ANAC58   ggataggattagttacttacctgatgatttgcttttacgaatactctcattcattcatacaagcgatgctatctccacaagcttattatctaaacgatgg  22993700                                                                                      <---------AtLEC2                                           <---------ANAC58                           <---------ANAC46                                           <---------ANAC58                           <---------ANAC58                                         --------->GLK1(2)                            <---------ANAC58                                        <---------ARR11(3)                        <-------GAMYB                                        <---------ARR14(2)                       --------->MYB111(2)                                        <---------GLK1(2)                        --------->MYB55(2)                                        --------->ARR11(3)                       <---------MYB46(3)                            --------->ARR11(3)                                --------->HSFB2a(1)           <---------At4g35610------>ZmHOX2a(2) --------->ETT(1)             <---------TOE2(2)    <---------ANAC58        <---------ARR11(3) ---------->ID1                <---------TOE2(3)    <---------ANAC46  <---------ALFIN1<---------YAB1  <---------ICU4   ----------->HVH21    <---------ANAC58----------->RAV1(1) --------->ARR14(2)  ------>NtERF2<---------TOE2(3)   aagtttgtgtggaagatgatgccaacacttgatcttgatgaagattcttgtcgcaatattggcacccttcgatttgacgaaggttgttgcatgttcttga  22993800               <---------ARR14(2)               --------->ARR14(2)              <---------MYB52(1)             --------->LBD16           <---------LBD16         --------->ARR14(2)         <---------ARR14(2)        <---------At4g35610        <---------ZAT2                                           ------>ZmHOX2a(2)        --------->At4g35610                                    --------->ARR11(3)       ------->TEIL                                    <---------YAB1     ---------->DOF2                                 --------->YAB1  <----------DOF2  <---------ANAC55(2)         ------->TEIL----------->HVH21    <---------ARR11(3)   <-----------GT1   aatcacatgaagctccggttcttacaagtttgaatctcaaacttatgacaccttctcatgatatagatcgtcttttatcaaatattaaacccattcttca  22993900                                                 --------->TOE1(3)                                                 --------->TOE2(3)                                                 --------->YAB1                                           --------->ANAC58                                     --------->GLK1(1)                                    <---------ARR14(2)                                    --------->ARR14(2)               <---------YAB1       <---------GLK1(2)                           ------->TEIL            --------------->AGL15--------->YAB1--------->GLK1(2)          --------->ICU4         <---        <---------ATHB12--------------->AtSPL3<---------GLK1(2)         <---------ANAC46         <---  <------ZmHOX2a(2)    <-------TEIL--------->At4g35610                  <---------ANAC58        <---- --------->ARR11(3)<---------------AtSPL8  --------->ANAC58             <---------ANAC58       ------ <---------ARR11(3)<---------------AtSPL3  --------->ANAC46            ---------->ID1  --------->ANAC46   tgagatcacaatcacttcttataggtacagtactatcagattcccaaggaatcttaacgtctgccaaacacttgtcgtgatgaaactccaagacaaggtt  22994000                                                        <---------ANAC46                                                      --------->ANAC58                                                      --------->ANAC46                                                      --------->ANAC58                                                      ===============================================                                                      <---------TGA1a                      <---------                     --------->MYB52(2)               --------->O2                   --------->ANAC46                   <---------MYB52(1)                 <---------O2                 <-----------GT1                  <---------MYB52(1)                  --------->TGA1a        --------->GLK1(2)           <----------DOF2                       ----------->HVH21           --------->ARR14(2)          <---------ANAC58   <---------MYB52(1)--------->ANAC46              --------->ARR11(3)      <---------HSFC1(2)    --------->LBD16    --------->ANAC58              <---------ARR11(3)      --------->HSFC1(2)<-----------GT1        --------->ANAC58              <---------ARR14(2) ------ANAC58    --------->LBD16               --------->At4g35610          <---------GLK1(2)  <----- ------ANAC58   --------->LBD16                <---------At4g35610       --------->LBD16<---------ALFIN1 ---TEIL  <---------ANAC58<---------LBD16     ------->TEIL               ------>NtERF2<---------ALFIN1 --->ARR11(3)  <---------LBD16   ------>ZmHOX2a(1)  <---------ALFIN1    --------->LBD16--------->ZAT14   cttgtggatgtttctttcccggtttgtttccggtccttgaaaagtttgcacctcacacgcgtgaaatactcttgccgagaatctttcaccacacttttat  22994100  Previous    Next  AGI:  At5g56810.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At5g56810 [Arabidopsis Thaliana] (GB:Q9FJT2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 22991746    to: 22993218    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g56820.1    Description:  F-box family protein. Identical to Putative FBD-associated F-box protein At5g56820 [Arabidopsis Thaliana] (GB:Q9FJT1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 22993560    to: 22995064    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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