AthaMap

For complete usage of AthaMap please enable JavaScript in the settings of your browser!

Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
--------->DAG2 ---------->DOF2 --------->DAG2 <---------ATHB12 --------->ANAC58 -- --------->ANAC58 <------NtERF2 -------- --------->ANAC58 --------->LBD16 --------->DAG2 <----------DOF2 --------->LBD16 --------->DAG2 <---------DAG2 ---------->DOF2 --------->ANAC58 ---------->DOF2 < ----->MYB52(1) ---------->DOF2 <---------LBD16 ----------->GT1 <-----------GT1 --
aactgaaaactaccttttgaaagcaataaagttcgccggaaaagccaaaaactagaaaaattgaagtaaggccaactaatttcaccaaaaaggtcgaaag	22972500
<---------TOE1(2) <---------ANAC58 <---------------AtSPL8 --------->TOE2(3) <---------ARR14(2) --------->TOE1(3) --------->ARR14(2) --------->ANAC58 --------->SPL7 --------->ANAC58 --------->ANAC55(1) <---------CCA1(2) <---------ANAC55(2) --------->ANAC58 <---------SPL7 --------->ANAC55(2) --------->ANAC46 --------->TOE1(2) --------->ANAC46 <---------ANAC55(2)--------->ANAC46 --------->ARR14(2) --------->ANAC55(2)--------->ANAC58 <---------ARR14(2) --------->ARR14(2)<---------ANAC58 --------->LBD16 --------->AHL20(2) ------->ANAC58 --------------->AtSPL3 <---------AHL20(2) -->DOF2 --------->ZAT6 --------->ANAC58 --------->AHL20(2) --------->AHL20(2) ------ZmHOX2a(1) <---------------AtSPL3 --------->ATHB12 ------->TEIL <--- ------->ANAC58 --------------->AtSPL8 <---------ATHB12 --------->ANAC58 <---------ZAT18
caggaaacgtaaccctaattttcgtacgaaactatatccccaaaatcaacttcaaatgatttaaatcaaatacgcaccgagataaattttgatgcactcg	22972600
--------->At4g35610 <-----------ARR10 --------->ZAT2 --------->GLK1(2) <---------ANAC55(2) <---------ARR14(2) --------->ANAC58 <---------ARR11(3) --------->ANAC46 --------->DAG2 --------->ARR14(2) --------->ANAC55(2) ------>NtERF2 >>>>>>>>>>GT-3b <---------ZAT2 --------->ANAC46 <---------TOE2(3) <---------At4g35610 <---------TOE2(3) --------->bZIP60(2) ---------->DOF2 <---------ARR14(2) <---------ANAC46 ------MYB52(1) --------->MYB52(1) --------->ANAC58 ---------->DOF2 ---------->DOF2
ttagcctcgacaccagtatctgcacataagaaaaatcaacggattaaagaaaaatacgaaatcggagctgggaaagtggtaatcgcgagtaaaggaaaac	22972700
--------->HSFC1(2) --------->HSFB2a(1) <---------HSFC1(2) --------->ANAC46 <---------ETT(1) ----------->HVH21 <---------ARR14(2) <---------ANAC58 --------->GLK1(2) <------NtERF2 --------->ARR14(2) --------->ATERF1(1) <---------GLK1(1) <---------DEAR3(1) <------NtERF2 <------NtERF2 <---------ANAC46 ----------->GT1 <---------ATERF1(1) <---------LBD16 ------>NtERF2 ------>NtERF2 <---------DEAR3(1) --------->LBD16 ----------->HVH21 --------->DEAR3(2) <---------MYB46(3) --------->DEAR3(1) --------->SPL7 <---------ANAC46 <---------DEAR3(1) <---------ARR14(2) <---------LBD16 --------->ANAC46 --------->ARR14(2) <---------DEAR3(1) --------->ANAC58 --------->LBD16 --------->DEAR3(1)<---------ALFIN1 ----------->HVH21 <---------At4g35610 <---------ATERF1(2) --------->ANAC58 --------->ANAC46 <---------At4g35610 --------->MYB52(1)<-----------HVH21 <---------LBD16 <---------ANAC58 >>>>>>>>>TBF1 --------->DEAR3(2)<---------REM1(2) <---------SPL7 <---------ATERF1(1)
aaacaagaagaagaaatgactcaccggcgggagaaaatccgacacggcgacgcttcttaggctcggtacccggaccggcggaggcttgctgcttctgaac	22972800
--------->ZAT18 <---------ZAT14 <---------ANAC46 <------NtERF2 --------->LBD16 ------>NtERF2 <---------DEAR3(1) ----------->GT1 --------->LBD16 <------NtERF2 --------->ANAC46 --------->LBD16 <---------LBD16 ----------->GT1 <------NtERF2 <------NtERF2 <---------ANAC46 <---------LBD16 --------->ATERF1(1) <----------ID1 <---------GLK1(1) --------->ATERF1(1)--------->LBD16 <---------LBD16 <-------GAMYB <---------ANAC46 <---------GLK1(1) <---------ANAC46 ---------->DOF2 ----------->GT1 --------->LBD16 *TSS
catggagtccccggcgagtgcaaggcgggaagagagtgagacaaaggcgggaaaattggagggttaatggaaatgcggagagagcgatacacaagagagt	22972900
<------ZmHOX2a(2) ----------->RAV1(1) ------->GAMYB ------------>CBF --------->ANAC46 --------->MYB46(3) <---------ICU4 --------->ANAC58 --------->MYB52(1) --------->ICU4 --------->ANAC58 <-----------GT1 <----------DOF2 --------->ARR11(3) --------->ANAC46 <---------DOF5.7(2) <---------ANAC58 <---------AHL20(2) ----------->GT1 --------->ANAC58 <---------ANAC58 --------->ANAC55(2) --------->At4g35610 --------->ANAC58 ----
cagtaagcttgtggctctctttatgtaatttttactgagatcaatagcagatggagaaatacacaccacatatgacttagcaaggcctgttaacggccca	22973000
xxxxxxx xxxxxxx <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ZAT6 xxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <------MYB83 ----------->ARR10 <------MYB46(1) xxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AtMYB61 xxxxxxxx --------->MYB59 <---------GLK1(2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------MYB55(1) <------- xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <-------GAMYB xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB52(1) xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) *TSSxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(s) <---- xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) -- xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)xx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(se3)<--- xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2 xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------MYB83 xxxxxxxxxxxxxxxx>smallRNA(si3)<--- --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------MYB46(1) xxxxxxxxxxxxxxxxx>smallRNA(se3)xxx <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB111(1) <---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB59 <---------TOE2(3) <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(fl3) ------------>CBF <--------HAHB4 <-----------GT1 <---------RAP2.3(3)xxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>DOF2 <---------YAB1 --------->MYB52(1) <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(se3)
aatgcaagaccaattcaagtttgtattattaggtattatttatctaattaacgaaatatcaaatgagggcgtttggtctagtggtatgattctcgctttg	22973100
xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->LBD16 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --------->LBD16 xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i) <---------ANAC58 <---------GLK1(2) xxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC58 xxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58 xxxxxxxxxxxxxx>smallRNA(i2)--------->SPL7 xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxx>smallRNA(s) <---------LBD16 ---DOF2 --------->PCF5 <---------HSFB2a(2) xxxxxxxxxx>smallRNA(i2)--------->ANAC46 -----MYB46(3) xxxxxxxxxxxxxxxxxxx>smallRNA(l2) ------->ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxx>smallRNA(se3) ------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(s)--------->HSFB2a(2) <----------DOF2 ------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(s2) <---------ALFIN1 <----------DOF2 <-----------GT1 --
ggtgcgagaggtcccgagttcgattctcggaacgccccatttgtattttttatgttcacactctttttgccactctttttgccaaatagtccatttttcc	22973200
------------>MYB.PH3(2) ---------->DOF2 --------->MYB46(3) --------->TOE2(3) <----------DOF2 --------->ATHB12 <-------TEIL <---------ICU4 <------ZmHOX2a(2) <--------HAHB4 <---------ARR14(2) --------->YAB1 --------->ARR11(3) <---------ATHB12 ------->TEIL --------->AGP1 <---------YAB1 --------->GLK1(2) <---------ARR11(3) --------->ICU4 <---------YAB1 <----------DOF2 --------->ARR14(2) <---------ANAC55(2) --------->MYB52(2) --------->WRKY12 ---------->DOF2 -------->DOF2 --------->ANAC55(2) --------->MYB59 <---------ARR14(2) <------ZmHOX2a(1) <
caaaagatccataactttaagaacatgtaatcattaaccaaagttagttattcttggtgaatctagttgactttgggagaggagaaagaaccgattttag	22973300
--------->ATHB12 -------->ATHB1 <---------ICU4 --------->ATHB51 <---------YAB1 <---------ATHB51 --------->ICU4 <---------------AGL15 <---------AHL20(2) --------------->AGL15 --------->AHL20(2) <---------ANAC58 ------------>ATHB5 ----------->RAV1(1) --------->ICU4 <-----------------AGL1 --------->ARR14(2) <---------YAB1 <---------ANAC58 ---------YAB1 ------>NtERF2 --------->MYB46(3)----------->GT1
ttattcttccccattattgaagtctagttctcggccaaatattcaacaacaaaaaattgactattgtgaaaattaggcttgttttgaaataggtctaact	22973400

AGI:	At5g56740.1
Description:	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone acetyltransferase. Identical to Histone acetyltransferase type B catalytic subunit (HAG2) [Arabidopsis Thaliana] (GB:Q9FJT8;GB:Q8LKJ6); similar to unnamed protein product [Vitis vinifera] (GB:CAO65400.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain Histone acetyltransferase type B, catalytic subunit (InterPro:IPR017380); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182)
Range:	from: 22970022	to: 22972890	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At5g56745.1
Description:	pre-tRNA. tRNA-Pro (anticodon: TGG)
Range:	from: 22973067	to: 22973138	Orientation: Forward
Links:	TAIR MIPS

Please cite the corresponding publications when using AthaMap.

printer-friendly version