Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->MYB46(3)                                                          <<<<<<<<<GT-1                                                          <-----------GT1                           <-----------GT1           <---------YAB1                           --------->YAB1            <---------AHL20(2)                <---------DAG2                  --------->HSFB2a(2)               <---------AHL20(1)                 --------------        <-----------GT1 <---------ARR14(2)          --------->AHL20(2)                 <----------DOF2      --------->AHL20(2)--------->ARR14(2)    <-----------GT1------->GAMYB<---------ZAT14    <------- --------------------->TaNAC69(2)  <---------YAB1   --------->YAB1        --------->ZAT14   ---------   tgttccaatataacacatttctcgagtattcacaattcttattcaaattcacaatattattaaccacattcaacaatgcagtagtatcgctttataaaaa  22952900                                                                   <---------LBD16                                                                <---------ANAC58            <--------                                                                <---------ANAC58            ---------                                                                ----------->RAV1(2)         ---------                                                              <-----------GT1      <---------MYB46(3)                                                           <---------ICU4       ------------>AtMYB77                                                      ----------->GT1           --------->MYB52(1)                                                     ----------->GT1<---------DEAR3(1)   --------->At4g35610                                                     ------>ZmHOX2a(2) ----------->HVH21<-----------RAV1(1)                                                   --------->ARR14(2) --------->At5g28300<---------At4g35610 ------->WRI1                                      <---------ARR14(2)----------->GT1<-------GAMYB --AHL20(2)   --------->ZAT6            ---------->DOF2   --------->ICU4     --------->MYB52(1) >YAB1     --------->YAB1   ---------->DOF2        <---------AGP1--------->TOE2(2)<---------DEAR3(1)   tcgaattcaacaatgaacactaacacactgtaaaggaatcaacaaagaaactagatcggaaaaattacctgcggtgacaaaacgacggttgtgctgcaga  22953000                                                                                          <-------TEIL                                                                                          ------>ZmHOX2a(2)                                                                                          ===========                                                                                         <------ZmHOX2a(2)                                                                                        <---------ARR14(2)                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                               <-------PIF5                                                                               ------->PIF5                                                                               <-------MYC2<---------ANAC55(1)                                                                               ------->MYC2<---------ANAC46                                                                               <-------MYC3<---------ANAC55(2)                                                                              --------->ANAC58                                                                              --------->ANAC58    <--                                                                         <---------ATERF1(2)    -----                                                                         --------->ATERF1(2)---------                                                                        <---------LBD16 --------->ARR14(2)                                                                        --------->RAP2.6(3)<---------ANAC58                                                                       --------->MYB52(1)--------->CCA1(2)                                                                       -------->P       <---------ARR11(3)                                                                    --------->TOE1(3)   --------->ARR11(3)                                                                    --------->TOE2(3) ----------->ARR10          <---------ALFIN1               --------->ANAC58           <---------DAG2  ---------->DOF2<-         --------->ANAC58             <---------ANAC58        ==================================HOX2a_HOX2a -At4g35610                           <---------ANAC58        ===================================HOX2a_HOX2a >ZAT14  --------->ANAC58      <---------CCA1(2)              ------>ZmHOX2a(1)------->MYC3<---------ANAC58 >At4g35610             <----------DOF2  --------->ANAC58  ---------->ID1--------->ANAC46============   cgcttgtgagcacgacctctgggcttctttttcttatcttgcttcgcaacctttggagtttgtcctctaaccttaccggcacgagccaaagatccgtgaa  22953100                                         --------->bZIP60(2)                                     <------ZmHOX2a(2)                                     --------->CCA1(2)                                    --------->AGP1                                    <---------ARR14(2)                                    --------->ARR14(2)                                    <---------ARR11(3)                                    --------->ARR11(3)           --------->TOE1(3)    <---------At4g35610    ------>ZmHOX2a(1)          ----------->RAV1(1)    --------->LBD16         <-----------TGA1 ==========HOX2a_HOX2a      --------->TOE2(3)                                                    <--- -------DAG2          --------->ANAC55(1)--------->ANAC46                          <---------HSFC1(2) -->TEIL   --------->TOE2(3)--------->TOE1(3)                                      --------->HSFB2a(1) >LBD16   ----------->GT1--------->MYB52(1)               ---------->DOF2          <---------HSFB2a(1) ---------DOF2---------->DOF2 <---------WRKY12--------->At4g35610--------->GLK1(2) --------->HSFC1(2) ==========HOX2a_HOX2a--------->ANAC46 <---------ALFIN1 --------->YAB1 --------->AHL20(2) <---------TOE1(2)   cctttcctgaaatcgttaaaacacacttaacgtcaacagatccacatcagaagaaaaatcaaaagctaatctataaatttcaagaagtttccaaggattt  22953200                                                <------NtERF2                                             --------->ZAT2                                             <---------ZAT2                                             <------NtERF2                                             --------->ATERF1(1)                                             <---------At4g35610                                             --------->At4g35610                                            <---------DEAR3(2)                                            <---------ATERF1(1)                                            ------>NtERF2                                           <---------ATERF1(2)                                           --------->DEAR3(1)                                           <---------DEAR3(1)                                           --------->RAP2.3(3)                                           --------->ATERF1(2)                                          <---------LBD16                                          --------->ORA47(2)                                          --------->DEAR4(2)                                          --------->ATERF1(1)                                         ------>NtERF2        --------->ATHB12                 --------->LBD16      <---------WOX13(1)                 <---------ATERF1(1)         --------->TOE1(2)    --------->ATHB12                 --------->ARR14(2)             <---------ANAC58                -   <---------YAB1                    <---------MYB52(1)             <---------ANAC58    <---------TOE2(3)   <---------ATHB12    <---------DAG2<---------ARR14(2)--------->At4g35610              <---------TOE1(3)   --------->ICU4      <----------DOF2--------->SPL7   <---------At4g35610            *TSS      ----- --------GT1  <---------GLK1(2)  ------>ZmHOX2a(1)    --------->GLK1(2)     <---------ARR11(3)  <----   tacccatgattgattagcttctctgctttttgttcctccgttccgccggctgcaagaagctgaaatgagttcgtgcgaaatctcagaattagggttttcg  22953300                                                --------->PCF2           ------->TEIL           <------------CBF        <---------ANAC55(1)     --------->AHL20(2)        --------->ANAC55(2)     <---------ARR11(3)        <---------ANAC55(2)     --------->AHL20(1)        --------->ANAC55(1)     <---------AHL20(1)                      <------------CBF       <-------TEIL   <---------ARR14(2)        <---------PCF2        <---------YAB1   <---------YAB1     --------->ARR14(2) <---------DAG2             <-----------GT1         <-------- -------->ICU4<---------AHL20(2)<---------AHL20(2)              --------->AHL20(2)          --------- ---->HSFB2a(2)     --------->ANAC46     <----------DOF2        <---------AHL20(2)    --------->At4g35610 -----HSFB2a(2) <-----------GT1 --------->ARR11(3)         <---------MYB111(1) <----------DOF2     <-   agatgatgatacgtatttaaacccgataccgaaatatattgggctttatgggcccatactaactacttaattactattgggctttattagctcgaatatg  22953400                        ----------->RAV1(1)            <---------AHL20(2)             <--------------   ----------->GT1   --------->ANAC46                  --------->AHL20(2)             --------->TOE2(3) --------->At4g35610 --------->ANAC58                  <---------ATHB51               <----------DOF2 -ARR14(2)           --------->ANAC58                 --------->AHL20(2)              --------------- >ARR14(2)    ------->TEIL                            <---------AHL20(1)        --------->ZAT6 --------GLK1(1)   ---------->DOF2           <------ZmHOX2a(1)                <-----------GT1   gacatctgtaaaactggacctataagcaacacaagtttgacaatataggaatacaaaataattcgaattcagagaaaaattatctctactttaataggtc  22953500                           <---------RVE1(1)                           <---------CCA1(1)                          --------->ARR11(3)                          <---------AHL20(1)          <-----------GT1                  <---------MYB46(3)                          <---------ARR11(3)      <---------AHL20(2)             --------->YAB1 <---------TOE2(3)   --------->TOE1(2)            --------->AHL20(2)     <----------DOF2        ----- -AGL15       --------->TOE2(3)                  --------->YAB1     --------->YAB1 --------->ZAT6 >AGL15     --------->GLK1(2)              <-----------GT1      --------->ZAT6   --------->MYB52(1)   tataacgtttgcataatctaaaacccaagatattttggaaacatatttctattttaataccattttccactaatacttttcaataacagtagttgtttcc  22953600                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                  <---------ANAC55(2)                                                         <---------ICU4                                                <---------ICU4  --------->CCA1(2)                                                --------->ATHB12--------->ARR14(1)                                               --------->AHL20(2) --------->ANAC55(2)                                            --------->ATHB51   <---------ARR14(2)                                            <--------HAHB4     --------->ARR14(2)                                            -------->ATHB1     --------->ARR11(1)                                --------->AHL20(2)      <---------YAB1                                --------->ICU4 <---------AHL20(2)<-------TEIL                            --------->AHL20(2)<---------YAB1 --------->MYB59      <-----------TGA1 --------->AHL20(2)   <---------ICU4   ----------->ARR10   --------->MYB52(1)  <---------AHL20(2)  --------->ICU4<--------HAHB4              --------->DREB2C(2)   <-----------GT1--------->AHL20(2)  <---------TOE2(3) <---------ATHB51  ---------->DOF2 ---->TOE2(3)    <---------WOX13(1)  <-----------GT1    --------->ICU4 --------->YAB1--------->DEAR3(1)   ataaataacgtctccactaattgaataaaatgaaatatttaacgaattattaattgcgataattagatacgaatcaaaaagattccaccggcttcgttgg  22953700                                                   <---------YAB1                                                  --------->KAN4(2)                                                <---------MYB52(1)                                           --------->MYB52(1)                                        --------->CCA1(2)            <-----------GT1             <------ZmHOX2a(2)                     <---------ARR14(2)        <---------RVE1(1)              <---------ARR14(2)            *TSS------>NtERF2        <---------CCA1(1)              <---------ARR11(3)            --------->ANAC58       <---------ARR11(3)              --------->ARR11(3)            --------->ANAC46       <---------AHL20(1)      --------->DAG2  --------->At5g28300   --------->ANAC58       --------->ARR11(3)     ---------->DOF2 ----------->GT1  ------------>CBF     <---------TOE2(3)--------->ANAC46 --------->ARR14(2)--------->REM1(1)    --------->ARR14(2) <----------DOF2    <-----------GT1  ----------->ARR10 <-----------GT1  --------->RAP2.3(3)   aaactttaagatatttccgattttaccccatataaagggaagatccaacggttattcttacatctctcaatacgcagccaaatacactctctctgaaacc  22953800  Previous    Next  AGI:  At5g56670.1    Description:  40S ribosomal protein S30 (RPS30C). Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal protein S30 (RPS30B) [Arabidopsis thaliana] (TAIR:AT4G29390.1); similar to Os06g0172600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056941.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65408.1); contains InterPro domain Ribosomal protein S30; (InterPro:IPR006846) Range:  from: 22952437    to: 22953286    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g56680.1    Description:  SYNC1 (EMBRYO DEFECTIVE 2755); ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding. Identical to Asparaginyl-tRNA synthetase, cytoplasmic 1 (SYNC1) [Arabidopsis Thaliana] (GB:Q9SW96); similar to SYNC3, ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G70980.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72488.1); similar to hypothetical protein OsI_001933 [Oryza sativa (indica cultivar-group)] (GB:EAY74086.1); similar to hypothetic Range:  from: 22953769    to: 22956262    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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