Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ARR11(3)   ----------->GT1<---------ARR11(3)                   --------->At4g35610 ----->RAV1(1)  <---------TOE2(3)                    --------->YAB1 ----ID1 ---------->DOF2                 ---------->DOF2                     <---------ANAC46  <-----   caaattagtaacaaagttgagatttttcgaagtgattcgtttcaaaagcatagaatcagaagagataacaactacaatggagggggatgacttactctgc  22857800                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                        <---------ANAC58       <----------DOF2      <---------ICU4                            <---------ICU4                 <------MYB46(1)       --------->YAB1                         --------->TOE2(3)                 <------MYB83       ------>ZmHOX2a(1) ----At4g35610         ------->TEIL     <---------ANAC58  <---------AtMYB61   <----------DOF2<-------   ttcttagtctcagacctctcatatgaaccctaatgaccaattgctagtttgctacaagggatggtctttggtatatagtcctttcaaaattgcttctttc  22857900                  <-----------GT1                                                                ----              ------>MYB83              ---------->DOF2                                          <---      --------->YAB1    --------->ARR11(3)     ---------->DOF2                           <---------ATHB12   ------>ZmHOX2a(1)    <---------ARR11(3)----------->GT1                  <---------REM1(2)     <--- ---DOF2      ------>MYB46(1)          <------ZmHOX2a(1)       --------->ARR11(3)        --------->ICU4   aagtcctatcaaaaccaaatttacaagataatatgaaatcaggaaagtgaaaagcttatacaagtgatattgaattcgacacagaagcgtaatcactaaa  22858000             <---------HSFB2a(2)             --------->HSFB2a(2)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)          --------->ARR14(2)          --------->ARR11(3)          --------->ANAC46          <---------ARR14(2)          --------->ANAC58         <------ZmHOX2a(1)            --------->ANAC58     --------->MYB52(1)          ----------->ARR10     ---------->DOF2    <---------TGA1a  <---------DAG2     =============================bZIP_DOF ----->ARR11(3)  --------->GLK1(1) --------->ARR14(2) ------ARR11(3)  <---------GLK1(1) <---------ARR14(2)                  --------->ZAT6 --------ARR10--------->LBD16 ----------->GT1                       --------->AtMYB61   atctaactaaaggatccagaaatctgaagtgagagtaaatacgccttattgtaaacagattggagatagaccatcactagaatactgcttaagtactaaa  22858100                                                                    --------->ALFIN1                                                                   <-------MYC4                                                                   --------->TOE1(2)                                                                   ------->MYC3                                                                   <-------MYC3                                                                   ------->MYC4                                                                   <-------PIF4                                                                   <-------MYC2                                                                   ------->PIF5                                                                   ------->PIF4                                                                   <-------PIF5                                   <-------GAMYB                   ------->MYC2                                   =========================================MYC_MYB                               <------MYB46(1)                    --------->O2                               <------MYB83                       --------->TGA1a                              --------->MYB59                     <---------TGA1a                --------->ARR11(3)<---------MYB46(3)              <---------O2            ---------->DOF2   <---------AtMYB61                   =============================bZIP_DOF       <---------GLK1(1)    <---------MYB52(1)                   ------------>OsbHLH66       --------->GLK1(1)<-------TEIL               --------->MYB52(1)               ---------->DOF2   atatgttcgaaatccaaagaactagattcagtttggtcgttgaagatagaacataacagagacggagcacgtgggagaaatatagagaaagagagctaga  22858200                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                xxxxx                                                                     --------->ETT(2)           -----                 <------ZmHOX2a(1)                                <---------MYB46(3)           xxxxxx      --------->ARR14(2)                                        <---------MYB52(1)          xxxxxxxxx     --------->ARR14(2)                  *TSS         --------->RVE1(1)                     ---------     <---------ARR14(2)       ---------->DOF2        --------->ARR11(3)                    <---------    <------ZmHOX2a(1)>>>>>>>>>TBF1  ----------->GT1  <---------ARR11(3)                 xxxxxxxxxxxxx   gagagaggaatcggcgagaggaagaagaagatgaaagggagtgaaaaccccttaaaatctctcttcgtttgtcgagagaattagaggggaaggggtgacc  22858300                                                                   <---------LBD16                                                                --------->GLK1(1)                                                                <---------GLK1(1)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->HSFB2a(1)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <------ZmHOX2a(1)     <---------HSFB2a(1)                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ---------->DOF2                                       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <--------P  <---------ANAC58 --------->LBD16                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->HSFB2a(2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->LBD16                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <xxx ---------HSFB2a(2)                            --------->PCF5 <------ZmHOX2a(1)                  <--- --------LBD16                                 <---------PCF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->MYB83          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <------MYB46(1)                         ---- ------>MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------MYB83 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->MYB46(1)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---- xxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxx>smallRNA(i)                       ----- ---->AtMYB61  <--------P              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->GT1     <---- xxxxxxxxxx>smallRNA(s)               --------->YAB1<---------ZAT6 <---------ANAC46            <----- xxxxxxx>smallRNA(fl3)               <---------ATHB12<---------MYB46(3)<----------CDC5     --------->YAB1 -->HVH21    <-----------RAV1(1) --------->MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ICU4 --HVH21  ------>ZmHOX2a(1)    <-----------GT1----------->TCP11(1) <---------ANAC58       <---------ATHB12 xxxxxx>smallRNA(se3)     <----------DOF2   --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  x   tcccggaaagtcctcgtgttggctccctctttttaaccactcataggtgggccagtggtaggaaggatttcgggctgagggtgaaattcccaataatccc  22858400                         --------->TOE2(3)                      <---------ALFIN1                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->At4g35610   <---------At4g35610                 <------NtERF2         --------->ZAT14                 <---------At4g35610   --------->At4g35610               <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->At4g35610      --------->LBD16                                             <-            --------->ANAC58          --------->DEAR3(1)                                 --------->ATERF1(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             --------->ARR14(2)     <--         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <-----------ARR10  <------       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <------ZmHOX2a(1)   -------     --------->ARR14(2)  --------->TOE1(3)      --------->AHL20(2)      --------->LBD16  <------NtERF2     <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            --------->HSFB2a(2) xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>NtERF2<---------AHL20(2)--------->ATERF1(1)  ------>NtERF2 ------TOE1(2)<---------At4g35610   <---------ATERF1(1)           ------>NtERF2         <---------RAP2.6(3) ----->LBD16--------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------HSFB2a(2)<----------DOF2 -----ANAC46--------->TGA1a        <---------ALFIN1             <---------RAP2.6(2)    --------->DEAR3(1) ---->LBD16 --------->ANAC46      --------->ATERF1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----LBD16 --------->O2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------LBD16         --------->RAP2.6(2) ----LBD16<---------ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ATERF1(1) <-------------- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2         --------->ARR14(2)         <--------------   gggttcgaatccccacggctgcaaacaccttaagtggccaccgcagacaatttaaaatcgggttatgcggcctccaggaactactcttgccgccttcggg  22858500                                        <---------LBD16                                        --------->TOE2(2)                                     <---------GLK1(1)                                     --------->GLK1(1)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxx>smallRNA(i)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------ANAC58                              <---------ANAC58                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                            xxxxxxxxxxxxxxxx>smallRNA(i)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <-------TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------TCP16(1) ----------->RAV1(2)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ZAT18  <---------MYB52(1)             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->TOE1(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------SPL7  <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->GLK1(1) -------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------------------------>ANAC81 xxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <- ---AG --------->ALFIN1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  ----- ---AGL1<---------ZAT18  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          ---------->DOF2   >>>>>>>>>TBF1   acgtatgcagtgggctagtctgggtccattgggcttgggatacctgggttatccaaaaaaaaaaaaaaaaaaaaaaagaattagaggggaagaagaaatg  22858600                                                                                    ------>MYB83                                                                                    ------>MYB46(1)                                                                                   --------->WOX13(1)                                                                                  --------->MYB46(3)                                                                                ------->TEIL                                                                              --------->ZAT18      <-                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      --------->ZAT18   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->ICU4                                --------->ZAT14  ---------->DOF2       <-------     <---------YAB1     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->At4g35610 --------->YAB1 ------TEIL            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------At4g35610<---------ATHB12 ------>GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gttcattgtaattcttcaagtttttgaggggcaatttagtcatttgcatttttgactgaactaatttcatctgaaaagaatgcaccaatcaaactctttt  22858700  Previous    Next  AGI:  At5g56380.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G26340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 22855898    to: 22858241    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version