Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------At4g35610                                     --------->At4g35610                                     <---------At4g35610                                    <---------DEAR3(2)                                 <-----------HVH21                                --------->bZIP60(2)                              <---------ANAC46                                --------->ANAC58                                 <---------ANAC58                                --------->ANAC58                       --------->At4g35610                              <---------ANAC58                         --------->ZAT2                              <---------ANAC58                  <---------YAB1<----------DOF2                         ----------->RAV1(2)      --------->WOX13(1)   <---------At4g35610                        --------->GLK1(2)  ----------->RAV1(2) <-----------TGA1  <---------ANAC58                        ------->TEIL--------->MYB52(2)     --------->GLK1(1)<---------At4g35610  ====                   ---------->DOF2<---------MYB52(1) --------->YAB1    <---------ZAT2      <--------- -YAB1  ----------->GT1--------->ARR11(3)  --------->At4g35610--------->YAB1--------->At4g35610  ----   agaagagaaattgagaaaatgaaaagaacctggctcgtcagttccatctgaacaatcacagaaatcgtcattaagctgagctttcgtgaatttctttgat  22844900                                                                                                   --                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----        --------->ANAC46                                                                         <---   ------>ZmHOX2a(1)        ----------->GT1                                                      <---  --------->TOE2(3)       <---------ANAC58                                                       ---- <---------ICU4           <---------ANAC46                                                     ------ =========HOX2a_HOX2a     <---------ANAC58--------->At4g35610                         <---------YAB1 -DOF2  --------->ANAC55(1)<XXXXXXXXXXXXXXXXXXXXMIR400                                --------->ICU4 -->ZmHOX2a(2)       <---------At4g35610  <---------At4g35610  ---------->DOF2     --------->ICU4<---   ccatccttacacttaatctctgaagatgacttgtaatacttctcatctaacacacataaacgagaaaaagaaatatcaaatcggagtgattatggtgaag  22845000                                                                             --------->ALFIN1                                                                           <---------ANAC46                              <---------At4g35610                          <------MYB83                              --------->At4g35610                          <------MYB46(1)                            --------->YAB1                                <---------DEAR3(1)                           <---------ATHB12                               --------->MYB46(2)                     <----------DOF2                                      <---------MYB46(3)                    ====================================HOX2a_HOX2a       --------->MYB52(2)                    ------>ZmHOX2a(2)                                    --------->SPL7   --------->ANAC58=====================================HOX2a_HOX2a    <---------SPL7   --------->ANAC58<------ZmHOX2a(2)                                  <---------HSFC1(2) ---->ZmHOX2a(2)  <---------ARR14(3)                                  <---------HSFB2a(1) ----ZmHOX2a(2)   <---------ARR11(3)                                  --------->HSFB2a(1) ----->ARR14(3)   --------->ARR11(3)                                  ------>ZmHOX2a(2) ------ARR14(3)   <---------AGP1                                     <------ZmHOX2a(2) --------ARR10    --------->ARR14(3)                                <---------ARR14(2) ----->ARR11(3)   --------->ARR14(2)                           --------->MYB52(1) ------ARR14(2)   --------->AGP1                           ------>NtERF2<---------MYB52(1) ------AGP1       <---------ARR14(2)                       --------->LBD16--------->MYB55(2) ----->ARR14(2)  <---------ARR14(1)              <------ZmHOX2a(1)  --------->ARR14(2)       ======== ----->ARR10  <---------At4g35610                ===========================HOX2a_HOX2a      ------>ZmHOX2a(2) ------ARR11(3)  <---------CCA1(2)               ============================HOX2a_HOX2a   <---------ARR11(3)   atcttaagcaaaacgaagcagatctttcaatgagcagaaaacaaaccttgaggagaaatgccgagaaacggatcgttcggtggagacgagcttgatctaa  22845100                                                                                                 <---                                                                                            ---------                                                                                          <---------LBD16                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                >>>>>>>>>TBF1        --------->CCA1(2)    <-----------GT1            ------>ZmHOX2a(2)    --------->ANAC58            ---------->DOF2       --------->ARR11(3)            <------ZmHOX2a(2)    --------->ANAC58      --------->MYB52(2)          <---------ARR11(3)           <---------ARR14(2)  --------->At4g35610     <---------MYB46(3)          <---------ARR14(2)           --------->ARR14(2)  <---------At4g35610  <------ZmHOX2a(1)            ----------->ARR10           --------->HSFB2a(2) =============================HOX2a_HOX2a     ---------->DOF2    --------->ZAT14<---------HSFB2a(2) -   tggcagaagcaaggagaagaagaaaggatagttgcaaagagacggagacaaaggaagatattactactactctcatcttcttcgagatcggaaccggaga  22845200                                 <---------ARR11(3)                 --------->CCA1(2)                <---------ARR14(2)                                                        <------MYB46(1)                --------->ARR14(2)        <---------ANAC46                                <------MYB83          --------->YAB1         --------->ARR11(3)                            <----------ID1   ----------->GT1           ---------->DOF2                                   --------->ANAC58 ------->TEIL   --------->ARR11(3)      --------->ZAT18                        --------->ANAC46 ------KAN4(2)  --------->ARR11(1)<------ZmHOX2a(2)*TSS             <---------ARR14(2)   --------->MYB59 >LBD16 --------->GLK1(2)--------->O2   --------->ZAT14             --------->ARR14(2) <---------MYB52(1) -------->MYB52(1)       <---------O2   <---------ZAT14 ---------->DOF2        --------->ANAC58   ---   atgaacggagaatcaaaagatttggccacgagaaagatcaagtgcagtgtctgtgagacaaagtttggcagatttgataaaacgacacagtttggttatg  22845300                                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       <-------GAMYB                                                                      <---------MYB46(3)                                                              <---------At4g35610<---------ANAC46                                                              --------->At4g35610<---------ANAC58                                                           <---------MYB52(1)    <---------ANAC58                                                          xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                         *TSSxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            <---------ANAC46             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------ANAC58             xxxxxxxxxxxxxxxx>smallRNA(i)                            <---------ANAC58             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <------MYB46(1)                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <------MYB83                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------TOE2(3)                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->MYB111(1)                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->MYB59                    xxxxxxxxxxxxxxx>smallRNA(se3)                 <---------YAB1                          xxxxxxxxxxxxxxxx>smallRNA(s)                <---------AHL20(2)                       xxxxxxxxxxxxxxx>smallRNA(fl3)                --------->AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------AHL20(2)              <---------AHL20(2)     <------MYB83               --------->YAB1                  <---------AHL20(1)     <------MYB46(1)              <-               --------->AHL20(2)              --------->AHL20(1)   <---------MYB52(1)            xxx           <---------AHL20(2)                  --------->AHL20(2)<-----------RAV1(2)              xxx  ------>ZmHOX2a(1)   --------->MYB46(2)    --------->YAB1xxxxxxxxxxxxxxxx>smallRNA(s)            xxx ---->TEIL <---------YAB1<--------P      ----------->GT1 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---   catcctattttgtataattaaaattaggtagcttgattcaacttagtaataaaataggcccattagctcagttggttagagcgtcgtgctaataacgcga  22845400              xxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxx>smallRNA(s)           xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        <-------TEIL        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------HSFB2a(1)                                                                --------->ANAC58     --------->HSFB2a(1)                                                                --------->ANAC58    <---------TOE1(2)                                                                  --------->WOX13(1)    <---------TOE2(2)                                                 <----------DOF2<------NtERF2   <-----------RAV1(2)                         ------>ZmHOX2a(1)  <----------DOF2    <---------MYB52(1) ----------HVH21  <---------AtLEC2             <----------DOF2<------NtERF2         <---------RAP2.6(3) xxxxxxxxxxxx>smallRNA(si3)          <-----------GT1        <---------DEAR3(1)      <-----------HVH21 xxxxxxxxxxxx>smallRNA(le3)     --------->AHL20(2)      --------->HSFC1(2)         --------->RAP2.6(2) xxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(2)      <---------HSFC1(2)         --------->ANAC46<- ------AtMYB61xxxxxxxxxxxxxxx>smallRNA(le3)   --------------------->WRI1  <----------DOF2         ---   aggtcgcaggttcgaaacctgcatgggccatcaattttttaactctgtcctttgtcgaaacgtcgtcgctttctttctttattagccgtcactcaaacta  22845500                                                                                                    <                                                                                                    -                                                                                                    -                                                           --------->ANAC58                        --                                                           --------->ANAC58                        <-             --------->MYB52(1)                        <-----------TGA1                         <----    <------MYB46(1)                                    <-----------HVH21                   <---------ALFIN1    <------MYB83                                      <---------ANAC58                     --------->AtMYB61    ----------->GT1                                <----------DOF2                     --------->ZAT18   --------->MYB59                        --------->AHL20(2)        --------->ARR11(3) <---------ZAT18 --------AHL20(2)                         <---------AHL20(2)  <----------DOF2     ---------->DOF2---- ------>AHL20(2)                  --------->MYB52(1)  <---------ANAC58   <---------TOE2(3)--------->MYB46(3)   taaatttggttaaactaatgggcctataactagcccaaaccgaataaaatggcctttcgtcacgctttaagaactagggttttcgaaagtccaccactat  22845600                                                                     <----------DOF2          -------                                                                   <---------At4g35610        <------                                                                   ------>NtERF2             <-------                                                                  --------->DEAR3(1)         <-------                                                                  --------->RAP2.3(2)        --------                                                                 --------->RAP2.3(1)         --------                                     <----------DOF2            --------->LBD16              <------- ---------ICU4             <---------At4g35610                  <---------ATERF1(1)          -------- -------->ATHB51           <---------ZAT2                       ------>NtERF2               --------- -------->ATHB12           --------->ZAT14                     --------->ANAC46             <-------- ------->ICU4              --------->ZAT2            <---------AHL20(2)                    <<<<<<<<<RAP2.2 --------YAB1              --------->At4g35610       --------->AHL20(2)             <---------TOE2(3) -----YAB1                 <---------ZAT14    <------ZmHOX2a(2)--------->DEAR3(1)   <---------TOE1(3) ----->YAB1<---------AHL20(2)    <---------MYB52(1) --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   cataattgcatatataaactcatcttctctgctcagttactttgtccgatcaaattttattctctccgccgcttatttgatgtgctatggtttagatatc  22845700   <---------YAB1 -->ARR11(3) ---ARR11(3) --GLK1(1) --CCA1(1)                                                 --------->AHL20(2) ->GLK1(1)                                                 <---------AHL20(2) ->CCA1(1)                                                --------->AHL20(2)             --------->MYB46(2) --RVE1(1)                                                --------->AHL20(1)           <---------MYB52(1) ->RVE1(1)                                                <---------AHL20(2)   --------->GLK1(2) >ARR11(3)             ---------->DOF2                    <---------AHL20(1) <------ZmHOX2a(1)     -- -ARR11(3)         ---------->DOF2         --------->TOE2(3)               <---------TOE2(3)  -------   ttatgttgattcgatttttttcaaagaaagcctaatttgcaaatttcttaatctatacaatttatttgtaatggattgaggaatctatcgttaggcgaaa  22845800  Previous    Next  AGI:  At5g56360.1    Description:  calmodulin-binding protein. similar to protein kinase C substrate, heavy chain-related [Arabidopsis thaliana] (TAIR:AT2G42390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22122.1); contains InterPro domain Low density lipoprotein-receptor, class A, cysteine-rich (InterPro:IPR002172); contains InterPro domain Glucosidase II beta subunit-like; (InterPro:IPR012913); contains InterPro domain Mannose-6-phosphate receptor, binding; (InterPro:IPR009011) Range:  from: 22840528    to: 22845251    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g56365.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 22845357    to: 22845430    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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