Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                        ---------->DOF2                       <------                                                     <---------HSFB2a(2)                     --------                                                     --------->HSFB2a(2)                  <---------RVE1(1)                                                <---------ALFIN1                          <---------CCA1(1)                 <-----------GT1             --------->TOE2(3)   --------->ARR14(2)      --------->ARR11(3)              <---------ARR11(3)          <-----------GT1        <---------ARR14(2)      <---------ARR11(3) ----------GT1--------->ARR11(3)    --------->TOE2(3)------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   ttttcaatataccaaagatttaccaattctttctatattcttaataacctccatcctcgaaagtccaaatccaagcttatggtatttttgggatatttaa  22720800                                                                                             <-------                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                    <---------LBD16                                           --------->HSFB2a(2)               <---------ARR11(3)        --------->ARR11(3)              <---------AHL20(2)                   --------->AHL20(1)        <---------ARR11(3)        --------->YAB1                             --------->ARR11(3)     < >>>>>>>>>GT-1                 --------->YAB1               <-----------GT1 --------->AHL20(2)    <xx -------->GT1                --------->AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  -------- ---AHL20(2)                --------->YAB1 <---------HSFB2a(2)       --------->ANAC46--------->ANAC46 ->AHL20(2)               --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    --------->AHL20(2)   tggttaatagtatcttagattgtttttttaaaataatagtattttttagaaaactcatatagtaaccatacactgcaaatatataccacggattatatat  22720900                           ---------->DOF2                          <---------AHL20(2)                         --------->AHL20(2)                         <---------AHL20(2)                   <<<<<<<<<<WRKY26            --------->ARR11(3)            <---------ARR11(3)           <---------RVE1(1)           --------->RVE1(1)           --------->CCA1(1)           --------->GLK1(1)          --------->ARR11(3)                                                <---------AHL20(2)          <---------ARR11(3)                                     <------------CBF     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->DAG2        --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ANAC46   --------->ATHB12                   <- ----------->GT1   <<<<<<<<<<WRKY38          --------->ANAC58   -------->ATHB1                  <---- --AHL20(1)<---------CCA1(1)          <---------AHL20(1)        --------->ATHB51          --------->MYB52(1) ---------ZAT6     <<<<<<<<<<WRKY43   --------->ARR11(3)       <---------YAB1      --------->At5g28300 xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <-----------TBP  ---------->DOF2   ------------>CBF  <---------AHL20(2) ->AHL20(1)<---------GLK1(1)  ----------->GT1--------->ANAC58  --------->ICU4     ----------->GT1  --   tagtggtaactagatatcttggtcaaattaaaaggttttatatattcaagccaaaaaagcagagaattattgatcaatttaaaatggtaaataaacgggt  22721000                          <---------ANAC58                          <---------AtLEC2                      <---------WOX13(1)                     <------------CBF                    --------->ATHB12                                                             ----               --------->ZAT14                                                                  <----              ----------->RAV1(1)                                                              <-----              <---------ALFIN1                                                                 <-----              --------->AtMYB61                                                                <-----             --------->ANAC46           ------->TEIL                                          <------           --------->ZAT6 <---------ANAC58                                                <----------           --------->ANAC46    <---------ANAC46<---------MYB52(1)                      --------->ICU4 --------At4g35610xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2)          --------->YAB1 ----P   <-----------GT1----------------------->TaNAC69(2)                ---------->ID1<---------ICU4 ------->At4g35610--------->At5g28300--------->ANAC55(2) --------->AHL20(2)   <----------DOF2<-------   aagcagacatttaacaccacagtaattggcatggtgtttatgtaactcagttagcgaatttaaatgtaagaagtttggctcttttcttcataatggtgcg  22721100        --------->ANAC46        --------->ANAC58     <---------ARR14(2)     --------->ARR14(2)                                                                           --- ----->DOF5.7(2)                   --------->YAB1                                         ---------->DOF2 ---GAMYB              --------------->AtSPL8                                            <---------AHL20(2) ----ANAC58            <---------------AtSPL8                                        --------->CCA1(2) ----ANAC58           ---------->DOF2<---------YAB1                                 --------->ARR11(3) ----ANAC46      <---------------AGL15--------->YAB1                               <<<<<<<<<RAP2.2--- -TEIL  --------->ANAC58   <-------TEIL    <---------GLK1(2)                   ------>ZmHOX2a(1)  --- -RAV1(1)    --------->ARR14(2)   <---------AHL20(2)                           <----------DOF2<------ZmHOX2a(1) --ANAC46    <---------ARR14(2) --------->YAB1                             ------->TEIL----------->TBP   ttaacagaatacgaaaatactcttcaaagtacataaataatcatagattcccaagagaaattttgttctgactcatgcatcctttagatatataaaggac  22721200                <---------ICU4         ----------->GT1       <------------CBF   --------->ALFIN1   <------NtERF2--------->YAB1                                           --------->ANAC58 <---------ANAC58          --------->AHL20(2)                            --------->ANAC58 <---------ANAC46    <---------ANAC55(2)                                 --------->ANAC46     <------NtERF2 <---------ANAC58    --------->ANAC55(2)                               --------->MYB46(3)   <-------- ------>ANAC58  --------->ATHB12         --------------->AtSPL8     <----------ID1          --------- ------>ANAC58 --------->ICU4            <---------------AtSPL8 ---------->DOF2         <---------AtMYB61 ------>ANAC46 <---------ATHB12   <---------ANAC46        ----------->RAV1(1)        <----------DOF2<   acggcgtggtattgaaaatcattacatgataaaatggagtttatgggtactataaacttgcaacaatatagcaacaagcaaaaaatacttttggtcggag  22721300                                                    <---------ICU4     <----------DOF2                                --------->YAB1     <---------DAG2                             <---------MYB52(2) -DEAR3(1)      <----------DOF2               ----------->RAV1(1) >ETT(1)---------->ID1                  --------->ARR14(2) ------ZmHOX2a(1)                       <---------ARR14(2)               --------->ZAT6          ----   aaggagacttttcgttttctttgtctctagccagagtttttggttctgccacaaacatcactgcgacctctcttgacactcgaggtagaaatatttctaa  22721400                                                                         <---------YAB1                                                                       --------->CCA1(2)                                                                      <---------ARR11(3)                               <-----------GT1                        --------->ARR11(3)                          <---------YAB1                              --------->ARR11(1)         <---                     <------MYB46(1)                             --------->TOE1(2)             ------                     ----------->GT1                            --------->YAB1                <------                     <------MYB83                             ------>MYB83                 <---------YAB1                 <---------ARR14(2)                           ------>MYB46(1)         <------MYB83              --------->ANAC55(2)        --------->YAB1     --------->DEAR3(1)        <------MYB46(1)              <---------------AGL15     <---------YAB1     --------->ANAC58           ----------->GT1         <---------At4g35610  <-----------GT1              --------->ANAC58  ----------->GT1<--------         --------->At4g35610<---------AHL20(2)             --------->ANAC55(1)  <---------AHL20(2) ----->ZAT6  <-----------------AG--------->YAB1            --------->ANAC46---------->DOF2 --------->ICU4   caccacaattcatcttacatatttggttatttttatcatcttctgataatacatctaaaacaccgaacataagatatgaaagttaatttggtgattattg  22721500                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                            ---------                                                                                      <-------TEIL<--                  <---------REM1(1)                                                   <---------ZAT18               <-----------RAV1(1)                                                    --------->ZAT18         --------->YAB1                               --------->ANAC58                <---------ZAT14         -------->HAHB4                               --------->ANAC58             <---------ANAC46         <---------ICU4                  --------->ZAT18                           <---------ANAC58        <---------ATHB12                 --------->ZAT14                           <---------ANAC58-- ------YAB1   ------->TEIL               <---------ZAT14                       <---------ANAC46------ ----->GT1 <---------YAB1            <---------------AtSPL8             <------MYB46(1) <---------ZAT14 ---YAB1--------->ICU4     --------->ZAT2<-------TEIL--------->DAG2     <------MYB83  --------->ZAT14 -ICU4 <---------TOE2(3) <------ZmHOX2a(1)          ---------->DOF2   <--------P  <---------MYB46(3)   ttataagctaatgatgaatgttgtagaggagctagggattaagtacactgatggaaaagcaaatgtggaagggttggagttgtttgggtgcacagtggtc  22721600      <---------DOF5.7(2)    --------->DOF5.7(2)                                               --------------->AGL15 ------ALFIN1 --------->ANAC58                              <----------DOF2             ------------- -----WRKY45  --------->ANAC58                 <---------YAB1      <-----------GT1  <------MYB83 -----WRKY12<---------ALFIN1                <---------ARR14(2)<---------AHL20(2)   --------->MYB59 -----WRKY38(1)                       <---------AtMYB61     --------->TOE2(3)  <------ZmHOX2a(1)  <-- >ALFIN1   --------->ZAT18            --------->MYB59     <---------YAB1    --------->YAB1        <-- -------LBD16 --------->ANAC46      <---------MYB52(1)  --------->YAB1<-----------------AGL1      --- ------->ANAC46         ------>ZmHOX2a(1)   --------->ARR14(2)--------->AHL20(2)   <---------TOE2(3) --->PCF5  <---------ZAT18     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------GT1<------MYB46(1)   cacggtgttaacgtccactccatgtcctcagactatcgcttaggtcgatacgatagaatcatctttaattttccccattcaggattaggttttggttcag  22721700  Previous    Next  AGI:  At5g56060.1    Description:  ATP binding / nucleotide binding / phenylalanine-tRNA ligase. similar to ATP binding / nucleotide binding / phenylalanine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G25030.1); similar to hypothetical protein OsJ_028611 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45128.1); similar to Os09g0479400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063479.1); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc; (InterPro:IPR002319) Range:  from: 22721234    to: 22722118    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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