Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->HSFB2a(2)                                     <---------HSFC1(1)                                          <---                               <------ZmHOX2a(2)     --------->AHL20(2)                     <--------         --------->REM1(1)    <---------ARR11(3)     <---------AHL20(2)         --------->ARR11(3) ---------MYB46(3)<------ZmHOX2a(2)  <---------HSFB2a(2)                       <---------CCA1(2) ---- -----------RAV1(1)      <----------DOF2          <--------HAHB4   --------->ARR11(3)      --------->ANAC58 -------DOF2  --------->At4g35610--------->KAN4(2)--------->YAB1   <---------ARR11(3)      --------->ANAC58 ->YAB1----------->RAV1(1)    --------->ARR11(3) <---------YAB1 --------->AHL20(2)        --------->WOX13(1)   ttttgttggcaacatcagcgatcaatactttagatcattctcgaaaaaactataattaaacacacataaaatctacttcttatatctattgacaatcaat  22650200                                                                                                    -                                                                                                    -                                                                                                    <                                                                                      --------->STY1(2) ------AHL20(2)                                              <----------DOF2          <---------STY1(2) -ATHB12 --------->AHL20(2)                         <-----------GT1              <-----------GT1    < ----->AHL20(2) <---------YAB1                   --------->YAB1         --------->ARR11(3)    -------   tttttaaaaaaaaaaatcactatagattccaatttgatcagatttagtcaatattcactataactttgatgaaacatattgattcactagctaacaaggt  22650300           <---------AHL20(1)           --------->ARR11(3)           <---------ARR11(3)                                 <---------AHL20(2)    <-----------GT1                                          <---------AHL20(2) --------->ATHB51                                            --------->YAB1 --------->YAB1                                              <---------AHL20(1) <--------ATHB1                                        ------->TEIL <--------HAHB4                                     <---------YAB1 <---------ICU4                                   --------->YAB1                   <---------YAB1 -------->AHL20(2)                                <---------ICU4                 --------->YAB1 -------->ICU4                   --------->YAB1  <---------ATHB51      --------->ARR14(2) ---------ATHB12                <<<<<<<<<ARR1    --------->ICU4        <---------ARR14(2) ---------ATHB51   <---------MYB46(3)    --------->AHL20(2)  --------->AHL20(2) <---------ATHB12 ---->GT1  --------->AHL20(1)   <<<<<<<<<ARR2    <---------ATHB12    --------->LBD16   caataattaccaatatatcgctgggtacttcacaatcgtagaataaaatcaataatgaatcaataaaattccagatttacaaatgataatcgacagcgag  22650400                     -------->P                  <---------ANAC58            --------->YAB1         ------>ZmHOX2a(2)            --------->ATHB12     <---------ARR11(3)      <---------ZAT18            <---------ICU4       --------->AGP1          --------->ZAT18           --------->ICU4        <---------AGP1          <---------ZAT14           <---------ATHB12      --------->ARR11(3)      --------->ZAT14           --------->HSFB2a(2)   ----------->GT1<---------ANAC58<------ZmHOX2a(2)--------->YAB1                  <---------HSFB2a(2)  <---------------AtSPL8        <---------CCA1(2) <---------ATHB12           <---------YAB1  --------->ZAT6 --------->At4g35610            --------->WOX13(1)        <---------YAB1         ----   ataaacagtacaaatcattagcttacctcttcttagatctaacaagtagccaatcagagtgtacaatcgaagaattatgttgattctagacgattaagct  22650500                                                                           <---------ANAC46                                                                    *TSS   <---------ANAC58                                                                   --------->ANAC58                                                                   --------->ANAC55(2)                                                                   --------->ANAC55(1)                                                                   <---------ANAC55(1)                                                                   <---------ANAC58                      <---------AHL20(2)                           --------->ANAC58       --------->ARR11(3)                     <---------AHL20(2)                            --------->ANAC46       <---------ARR11(3)                     --------->AHL20(2)                            <---------ANAC58       <---------ARR14(2)                  <--------ATHB1                                   <---------ANAC55(2)    --------->ARR14(2)                  --------->ATHB12                            ------>MYB46(1)           --------->LBD16                 <---------ATHB12   <----------DOF2           ------>MYB83 <---------ANAC58         -                 <---------YAB1    ------>ZmHOX2a(2)        --------->DEAR3(1)      <---------ARR14(2)          <---------WOX13(1)     --------->ARR11(3)         --------->DREB2C(2)     --------->ARR11(3) ----->At4g35610 --------->ICU4  <---------ARR11(3)        --------->DEAR3(2)       --------->ARR14(2)   tctgaatcgtcgattgacaatgatttattttgtctgatctttttttttttttgtttcagacaccgacttacgtaattcggtgtgaatatccagatattag  22650600                                                <---------ANAC46                                                <---------bZIP60(2)                                                <-----------RAV1(1)                                             --------->ALFIN1                                            <-------MYC3                                            ------->MYC3                                            <-------MYC2                                            ------->MYC2                                           <---------ANAC46                                           <---------ANAC55(2)                                           <---------ANAC58                        <----------DOF2    <---------ANAC55(1)                        =============================bZIP_DOF                     <---------ARR11(3)    <---------TGA1a                ------------>CBF           --------->TGA1a           --------->AHL20(2)              --------->O2           --------->AHL20(1)              <---------O2           <---------AHL20(2)              <---------ANAC58                    <---------AHL20(2)           <---------AHL20(1)              --------->ANAC55(2)                 <---------ATHB51     <          --------->AHL20(2)        <---------AHL20(2)                      --------->AHL20(2)      -        --------->TOE2(3)           --------->AHL20(2)          --------->AHL20(2)                --- -------->YAB1 <-----------GT1    <-----------TBP          ------------>CBF <---------AHL20(2)<------   aaacataaaacattaaattacaatgtctttaggcccatttatatcacgtgttgtggcccatttcaattatctacgttttaaattatggtccatgaactgg  22650700                              <-----------GT1                                          --------->AHL20(2)                          <---------AHL20(2)                                    --------->ANAC58       <---------DAG2     <---------AHL20(1)       --------->ANAC46             --------->ANAC58       <----------DOF2  <---------YAB1  <---------YAB1                          --------->ANAC46       ------>ZmHOX2a(1)<---------AHL20(2)         <---------RAP2.6(2)      <-----------GT1     <-----------------AGL1<---------YAB1          --------->ANAC55(2)  --------->AHL20(1) ---------At4g35610    <---------AHL20(1)         --------->RAP2.6(3)   <---------AHL20(1) -------->At4g35610 --------->YAB1   <---------YAB1<---------ANAC55(2)<---------AHL20(2)         <--- ------>ZAT18    --------->YAB1  <----------DOF2  <---------LBD16   <---------YAB1     --------->YAB1 -----RAV1(1)   <-------TEIL <<<<<<<<<<GT-3b      <---------At5g28300--------->AHL20(2)<---------AHL20(2)   tgggctgtcctttttcggttcataatattatttttctttattatgctactattacggcatatatatgtttattatatattacaagacaattatatgcaaa  22650800                                                         <---------ARR11(3)                                                         --------->AHL20(1)                                                         --------->ARR11(3)                                                        --------->AHL20(2)                                                    <---------AHL20(2)                ----------->GT1                                                    <---------AHL20(1)                <----------ID1                                                    --------->AHL20(1)            ---------->DOF2<---                                                    --------->AHL20(2)           --------->AHL20(2)                                            ----------->GT1                      <---------AHL20(2)                                            --------->ICU4                 --------->YAB1    -------- ------ATHB12                   <-----------GT1 <---------AHL20(2)      --------->WOX13(1) --------->AHL20(2)   tcatctgttttgaatttctatactattctctaattcactacatgtaatgtttaataaaatatatacaaactaaacaatcacatttaaagagaaaaaaata  22650900                                      --------->ARR11(3)        --------->TOE2(3)             <---------ARR11(3)        <----------DOF2             <---------YAB1     <-----------GT1              --------->YAB1   --------->YAB1               ------->TEIL --------GT1              --------->LBD16          --------->AHL20(2) ->AHL20(2)             <---------LBD16 ------>ZmHOX2a(2)                         <---------ATHB12   tacaatattactttaaaaatatgaaacccggacgtatcatgatctagttagaattaaaactgtaaccatatcaaattacatccaatgttttagtttagat  22651000                   --------->CCA1(2)                   <------ZmHOX2a(2)                  --------->ARR11(3)                                                              <--                  <---------ARR14(2)                                                              <--                  --------->ARR14(2)                                                          <------            --------->YAB1                                                                    <------           <---------YAB1                                                                     -------           --------->ICU4                                                                    <-------         <---------ICU4                                                                    --------->YAB1         <--------HAHB4                                                                   <---------AHL20(2)        <---------YAB1             <---------AHL20(2)                                  --------->AHL20(2)        --------->ICU4             --------->AHL20(2)        ---------->DOF2          <---------AHL20(2)      --------->YAB1  ----------->RAV1(1)                  <------ZmHOX2a(2)    --------->TOE2(3) ---     <-------TEIL <---------ARR11(3)                      <-----------ARR10    <----------ID1--------   --------->YAB1 --------->AGP1  --------->AHL20(2) --------->MYB52(1) <---------YAB1--------->AHL20(2)   accaatattcataattataagatccaacattcacaaattaattcacaaatgcagaaaacggatcaaagctatttatgaaaaaccacaaataaataatcat  22651100  Previous    Next  AGI:  At5g55896.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 22645243    to: 22650568    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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