Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                            <--------                                                                                            ---------                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                             --------->ANAC46                           --------->ANAC46            ----------->GT1                  --------->ANAC58                         <---------ALFIN1          <---------ANAC46       ---------->DOF2                                     <---------REM1(2)      <---------WOX13(1)       <---------HSFB2a(2)                                   -------->P <----    --------->ATHB12           --------->HSFB2a(2)                                <---------ANAC58  --------->At5g28300    <-----------ARR10   --------->ANAC58                     <---------ANAC58   aaacagtaattggtttgtaaatttgaaattcttcccaaagcttacacaagcgaccatagtagtcaataacaggctgtccatcttgcctacacgcagcaag  22634800   --------->TOE1(3)   --------->TOE2(3) ---->ZAT2 -----ZAT2            ------->TEIL                                                       ----------->HVH21 ---->At4g35610    --------->ANAC58                       --------->ANAC58       --------->CCA1(2) ------>RAV1(2)    --------->ANAC58                       --------->ANAC58       --------->GLK1(1) -ZAT2     <------MYB46(1)       ----------->RAV1(1)      --------->ANAC46      <---------ARR14(2)<-- >ZAT2     <------MYB83 <----------DOF2                 <-----------GT1         --------->ARR14(2)--- -----At4g35610    --------->ANAC46                <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ctgagccttaatttggtgaacacgaactttgtttcccacagagaaacgttgttttaattcactccatagttgatgagcatcggatatgaaggtgaccgtg  22634900                                         --------->ATHB12                                        <------ZmHOX2a(2)                                        <---------YAB1                                  --------->TOE2(2)                                  --------->TOE1(2)                                  ------->GAMYB                                 --------->DEAR3(2)                                 <---------MYB55(2)                                 --------->MYB46(3)    ----------->RAV1(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                -------->P--------------------->WRI1         <---------GLK1(2)                                ------>MYB83          ------>NtERF2        --------->LBD16                                --------->ANAC46  <-----------GT1        <---------LBD16     <----------DOF2            ------>MYB46(1)  <---------ZAT14   --------->YAB1 -------ARR14(2)       xxxxxxxxxxxxxxxx>smallRNA(i)<---------At5g28300 --------->GLK1(2)         <--- ------>ARR14(2)      <-----------ARR10<---------ARR11(3)         <---------YAB1          <---------MYB46(3)   gatttgacttttggttctatggaggctctaatccaacccacgatcattgagtttaccgcctgccaattctcataatccggattatctaatggtggttttg  22635000                                         --------->ZAT14                                         --------->ZAT18                                         <-------TEIL         <---------ALFIN1                                  <----------DOF2          <---------WRKY18(1)                                 <---------ANAC58         --------->WRKY45                                 <---------ANAC58         <---------ETT(2)                            <---------MYB52(1)            --------->WRKY38(1)                          <---------ANAC58                --------->WRKY12                          -          --------->YAB1  <---------ANAC58              <-------GAMYB                      --------->MYB52(1)      --------->ATHB12   <---------TOE2(3)             <-----------RAV1(1)    <-----------GT1       <     --------->MYB46(3) <-----------GT1  <---------ZAT18<---------At4g35610 <-----------HVH21     <-- ------TOE2(3) <-----------GT1   <---------ANAC46<---------ICU4        <---------YAB1   --------->YAB1   agattgaaccattgataaaaccagttttacgtttggcttgaagtgcattcaacatttctgttgaccactcgttgtaattgtcaccggttaacataacaga  22635100                         --------->ATERF1(1)                        <---------At4g35610                        --------->At4g35610                        --------->ZAT2               <-------GAMYB                                                <---------ANAC58               <---------ANAC58                                             <---------ANAC46             xxxxxxxxxxxxxxxx>smallRNA(i)                               <------MYB83            --------->LBD16                                            <---------------AtSPL8           <---------LBD16                                          <---------MYB46(3)          <------NtERF2 <---------ZAT2<---------LBD16               --------->ATHB12          ----------->RAV1(2)     <---------------AtSPL3         <-------GAMYB      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->MYB55(2)   --------->YAB1      <---------ARR14(2)       <----------DOF2 <---------MYB46(3)   <---------ICU4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->MYB111(2) --------->ALFIN1  --------->ICU4      <------NtERF2 --------->ZAT14            <--------P   <---------ANAC58  <---------ATHB12  --------->ETT(1)<---------ZAT14     --------->REM1(1)  <-------TEIL <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->SPL7   ----------->ARR10<------MYB46(1) -------->GLK1(1) <-----------HVH21 --------->ZAT18<---------MYB46(3) <---------WOX13(1)   <---------At4g35610 ---------GLK1(1)<---------MYB46(3) <---------SPL7 ----------->GT1 <---------YAB1   <-----------RAV1(1) ----ZmHOX2a(1)<---------ANAC58  <------------------SPL14xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <------ZmHOX2a(1)   ggaaatcatggcccctgggttgtcggagctggccagagtgtacggagacactttggttacatctggttgttgattggtacgtggatgtgttgcagaggag  22635200                             --------->ANAC46                             --------->ANAC58                             --------->ANAC55(1)                             --------->ANAC58                             --------->ANAC55(2)                                          --------->ANAC58                             <---------ANAC55(2)                             --------->MYB52(1)                      <---------ANAC58                             --------->ARR14(2)     -----------                      <---------ANAC58                       --------->ARR14(2)           --------->ANAC58                    *TSS----------->HVH21      ---------->DOF2     <---------ARR14(2)   --------->MYB52(1)                 --------->ATHB12       <---------TOE2(3)    <---------ARR14(2)     --------->YAB1 <-                --------->ICU4   --------->ANAC58      --------->DAG2      <---------MYB52(2)     <--                <---------YAB1   --------->ANAC58     ---------->DOF2<---------------------WRI1   ---   acttcttctgcaatagacatgatttcttgacacgcaagaaccaaggttttaaagagaaaagcggaaacgaattcgaaactatcgaataagaaacgaaaat  22635300                                                --------->ZAT18                     xxxxxxxxxxxxxxxx>smallRNA(i)            <------ZmHOX2a(2)                   --------->ZAT14           <---------AGP1                       <---------ZAT18           <---------ARR11(3)                   <---------ZAT14                             xxxxxxxxx           --------->ARR11(3)             --------->ANAC55(2)                              <xxxxxxxxx           --------->AGP1                 <------MYB46(1)                                 <xxxxxxxxxx          <---------CCA1(2)               <---------ANAC55(2)                          <---------AHL20(2) >GT1    ----------->ARR10                <------MYB83                             --------->ICU4 --------YAB1 <----------DOF2            --------->MYB59                      ----------->GT1 ---------TBP------>ZmHOX2a(2)   --------->REM1(2)                        ---------->DOF2 xxxxxxxxxxx ------>AHL20(2)    <---------GLK1(1)    <---------TOE2(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttttataggtttagatctttagagctctgataccatgtagaattaggtattgcactaacttgagtttattgattcacaaagtgtgatatttatacaagag  22635400                                                                      --------->GLK1(2)                                                                      <-----------ARR10                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <---------GLK1(2)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <---------ARR11(3)                                                         <---------AHL20(1)                                                         --------->ARR11(3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               <-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->ARR14(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(le3)          <---------MYB59   --------->AHL20(1)        --------->LBD16 xxxxxxxxxxxsmallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ANAC46 xxxxxxxxxxxsmallRNA(se3)           <------ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------ xxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   agtcatcgtataaaataaactcgaatccctaaattataggacataactctgtcacaaaatatatcacaagagattctactctatccccaatagatttaga  22635500                                                                                           <---------MYB52(1)                                                                                         --------->MYB52(2)                                                                                     <---------MYB46(3)          --------->ICU4                                                            <---------AtMYB61         ----------->GT1                                                 --------->HSFB2a(2)       ---------->DOF2                                      <---------ARR14(2)    <----------DOF2     <---------YAB1                 --------->AHL20(2)      --------->ARR14(2)   <---------ANAC58     <---------TOE2(3)          <---------YAB1          --------->At4g35610      <---------ANAC58 ---TOE2(3)            --------->TOE2(3)            <-----------HVH21   <-----------GT1 <-------TEIL   tttgattaagaaagtattaaacaaaccctagttgatgaataaataagtttatgcggtcagtagaaccgaaattttctcgatttgctttggttcgttctgt  22635600                                                      --------->ATHB12                                              ------->GAMYB                                             --------->ANAC46                                             --------->ANAC58                                             --------->ANAC58                  --------->YAB1                                        <------ZmHOX2a(2)                <-----------GT1                                        --------->CCA1(2)                --------->YAB1                                       --------->ARR11(3)            <---------YAB1                                       <---------ARR11(3)            <---------AHL20(2)                                       <---------ARR14(2)    --------->GLK1(1)<<<<<<<<<ARR2                                       --------->AGP1<---------YAB1  --------->AHL20(2)                              --------->AHL20(2)   --------->YAB1   --------->AHL20(2)      <---------YAB1     --------->ZAT6--------->ARR14(2)    <---------GLK1(1)<---------ATHB12    ----------->GT1--------->ZAT6  ---------->DOF2 --------->TOE2(3)<---------AHL20(2)              <   tcaaagttgtgatttgattcaacactatctctataaataaagatccaacgcaatcttaattggatttcattttaattacaatcaaacccttcagtaattg  22635700  Previous    Next  AGI:  At5g55875.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.4e-191 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata) Range:  from: 22630745    to: 22635220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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