Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------ALFIN1                             --------->ANAC46                             --------->ANAC58                             --------->ANAC58                       --------->TOE2(3)                  <---------AHL20(2)                     <---------ARR11(3)              ------->TEIL                             -------                     --------->ARR11(3)           --------->ICU4            --------->ALFIN1  <------                   <---------AHL20(2)        --------->ANAC58             --------->ALFIN1  ---------     <---------TOE2(3) --------->TOE1(3)     --------->ANAC46             <---------ANAC46  --------- <----------DOF2  <---------AHL20(2)         --------->ANAC58           xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >DOF2            --------->AHL20(2)       --------->MYB52(1)   <---------YAB1     --------->ANAC46   actctttaatgaaacaaaaattaaatcttaaacgacactctttgcaaacggaatgaatatttcattacgattagaggtgtgttacacaaaacacaagcat  22624800                                             --------->LBD16     --------->ZAT14       <----------DOF2 <---------LBD16     <---------ZAT14--------->ATHB12      --------->MYB52(1) -->YAB1       --------->ARR11(3)       --------->KAN4(2)                                ----------->GT1 ---ICU4       <---------ARR11(3)      <---------HSFB2a(1)                         ---------->DOF2 >ANAC58      --------->GLK1(1)        --------->HSFB2a(1)                       <------ZmHOX2a(2)  - >ANAC58      <---------GLK1(1)     <------ZmHOX2a(1)                      <----------DOF2       ----   gactcactgaagttggaaatcttgatgggcttttactaggaacataccggattatagctaaacccccttaatcgcttctttcgatcaaagtgagaaaaat  22624900          --------->YAB1                         <---------AHL20(2)         <---------ATHB12                       <---------AHL20(2)                        <---------YAB1       --------->WOX13(1)                       --------->AHL20(2)                <---------AHL20(2)      <---------WRKY12                     <------ZmHOX2a(1)           ----------->GT1   <---------TOE1(2)      <---------WRKY38(1)          ----------->RAV1(1)                --------->DAG2     <---------TOE2(2)     ------------>CBF --------->ICU4      ----------->GT1           ---------->DOF2<-----------GT1     --------->WRKY18(1)          ----------------->AGL1         <----------ID1  --------->AHL20(2) --------->DOF2       <---------YAB1 <-----------RAV1(2) --------->At4g35610 <---------TOE2(3) ----->YAB1---------->DOF2--------->YAB1<------ZmHOX2a(1)<---------At4g35610<-----------GT1   cagaaaggtcaatgaaagtttgtgatgatcaaaattcccacaggaggaaaataaatgggaactgaaaacgaaaaggtttaacatttaatcgtatgattca  22625000                                                                              <---------AHL20(2)                                                                              ----------->TBP                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                                                                          ----------->TBP                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                                        ----------->TBP                                                                      <---------AHL20(2)       <-----                                                                    <---------AHL20(2)<---------AHL20(2)                                                                  --------->AHL20(2)<---------AHL20(2)                                                                  <---------AHL20(2)----------->TBP                                                                  ----------->TBP <---------AHL20(2)                                                                ----------->TBP <---------AHL20(2)                                                                --------->AHL20(2)--------->AHL20(2)                                                 --------->At4g35610--------->AHL20(2)--------->AHL20(2)                                                 <---------At4g35610----------->TBP --------->AHL20(2)                                              <-------TEIL      <---------AHL20(2)----------->TBP   <                                          <---------YAB1      --------->AHL20(2)--------->AHL20(2)---            --------->TOE2(3)         --------->YAB1          ----------->TBP --------->AHL20(2)  <--         ----------->RAV1(1)      <---------AHL20(2)          <---------AHL20(2)----------->TBP------    <---------At4g35610          --------->AHL20(2)   <---------ZAT14 --------->AHL20(2)       ------    --------->At4g35610  <-----------GT1--------->CCA1(2)   ----------->TBP ----------->TBP--------->ARR11(3) <-------TEIL       <---------ANAC46<---------TOE2(3) --------->ZAT14 ----------->TBP ----------->TBP   aaattcatctccaacattaatgtcgtttatcgatatttaatgatatgattcatctgtatactatatatatatatatatatatatatatatatatatcatg  22625100                                <---------YAB1                                --------->ICU4                                                      -                              --------->YAB1                                                  <------                          <------------AtMYB77                                          <---------ANAC55(2)                          --------->DEAR3(2)                                            --------->ANAC55(2)                          --------->MYB46(3)                              <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ATHB12     ------>MYB46(1)                         --------->ANAC58   <-----------HVH21 ----ANAC55(2)           ------>MYB83                            --------->ANAC58  --------->O2    <- ---------MYB52(2)       -------->P                              --------->ANAC46  --------->bZIP60(1) ---->TEIL        <---------KAN4(1)                         ----------->HVH21      <---------bZIP60(1) ---------GT1     --------->KAN4(1)                       <---------At4g35610   <---------ANAC58 <--- --->ANAC55(2)   ------------>CBF     ---------->DOF2     --------->At4g35610   <---------ANAC58----- ----->GT1   --------->YAB1------->GAMYB               <------NtERF2     <---------MYB52(1)  <-------   taactaatcagtttataagaacaatccaaccgtcataatagaaagcgaagcgatgtcgtcgtctgacaagaaaccgttgattccgtcgtcacatatcacc  22625200                                       <---------ANAC58                         <---------AHL20(2)  ----------->GT1        <---------AHL20(1) --------->DOF2          --------->AHL20(2) ---At5g28300            --------->AHL20(1)                                  <---------------AGL15 --------WRKY12         --------->AHL20(2) <---------YAB1      <---------ANAC46                  <--- --------HVH21   <-------TEIL          <---------ANAC58 --------->ARR11(3)   --------------->AGL15 ---->DEAR3(1) <---------MYB52(1)      <---------ANAC55(2)     <---------REM1(1)       ---------->DOF2 ----GT1     --------->MYB59        <---------MYB52(1)  <---------ARR11(3)<-----------GT1        <---   gtcaaagttaaaaatcaggtacttgaataaatttcgccattacttatgctaaaaacaagataatggtgtagttttgtaactcaattttgaaaagaatcac  22625300                                                                               <---------ICU4                                            <---------AHL20(1)                 --------->ATHB12                                            <---------AHL20(2)                 --------->ATHB51                                            --------->AHL20(1)                 --------->YAB1                                           <---------AHL20(2)                  -------->ATHB1                                           --------->YAB1                      <--------ATHB1                                           --------->AHL20(2)                 <---------YAB1                                          <---------YAB1             --------->At4g35610                       ----------->GT1  <---------ICU4           <------ZmHOX2a(1) --------->ATHB12       <---------YAB1  --------->ANAC58<---------YAB1         <---------AtLEC2<---------ATHB12  ----- ------DAG2            --------->ANAC58--------->ICU4  --------->ARR11(3)     --------->ICU4--------- -------DOF2 ----------->GT1         --------->YAB1    <---------ARR11(3)   --------->WOX13(1) <-----   ttttttgttatgctattgtgaaaacaagaaaaatttcaaacataattatattttggagatttttgcaggacagcaaaacaatcattgatttgtaatgttc  22625400                                                                                              <------                                       <---------AHL20(2)                  <----------DOF2   --------                                      <---------AHL20(1)                <---------ARR11(3)  <--------                                      --------->AHL20(1)           ----------->GT1         <---------AHL20(2)                                  <---------AHL20(2)           ---------->DOF2             --------->AHL20(1)  <---------ZAT6                 <---------AHL20(2)          --------->MYB46(3)        --------->YAB1 ---->ATHB12                     --------->AHL20(2)  --------->GLK1(1)  --------->ARR11(3) --------->AHL20(2) >ICU4                       <---------AHL20(2)      <---------GLK1(1) <---------CCA1(2)  --------->YAB1 --TEIL <------ZmHOX2a(1)<------------------------ANAC81   ----------->RAV1(1)        --------->ICU4<   attagtgttaggattttagtttttttttgttttaattttatatattttgcaatagatttcccaacaaaagtgtatatcttttatagcaaaaattataata  22625500                              ----------->GT1                     <---------ANAC46                     <---------ANAC55(1)                     <---------ANAC55(2)                   --------->ARR14(1)                   --------->CCA1(2)                  <---------ARR14(2)                                          --------->ZAT14   ------->GAMYB  --------->ARR14(2)                                          <---------ZAT18      <-   --------->DEAR3(1)--------->ANAC55(2)                                      <---------ZAT14      <-  --------->MYB46(3)<-------TEIL                                  --------->ANAC58   <---------HSFB2a(2)  --------->DEAR3(2)<-----------------------TaNAC69(2)            --------->ANAC58   --------->HSFB2a(2) ---AHL20(2)      --------->ARR11(1)                 <---------YAB1----------->RAV1(1)--------->LBD16 ->YAB1         ----------->ARR10               <---------ICU4   --------->SPL7 ------->TEIL       == -YAB1  ------>ZmHOX2a(1) <-----------GT1      --------->ICU4   <------ZmHOX2a(1)   <---------LBD16-- -----------GT1 <---------TOE2(3)         ----------->GT1  <-----------GT1    --------->ZAT18      <-   ttcaaccgtcctaaaactaagatacgtataacatgttaaaagttttgtaacaattactatttaacaggacgacatatgtgtgtacttccggattaagagg  22625600        <-------TEIL     --------->ZAT2     <---------ZAT2             ----------->HVH21 --------TGA1a         --------->AtLEC2                                                            -- --------bZIP60(2)   <---------ANAC58                                                             <-- ==============================================bZIP_DOF        <---------TOE1(3)                ----- ------->TGA1a<---------At4g35610   ---------->DOF2            <---------TOE1(2)        <------ZmHOX2a(2) --------ANAC46      <---------ANAC58       <---------ANAC46   <---------TOE2(3)      <------ZmHOX2a(1)   gacgtcgagcttcgtaagatgatgcatgcatactctgacaaagttggagtagaaatgtctactctaaggtttctcttcgatggaaataggatcaaactca  22625700  Previous    Next  AGI:  At5g55856.1    Description:  similar to SUM1 (SMALL UBIQUITIN-LIKE MODIFIER 1) [Arabidopsis thaliana] (TAIR:AT4G26840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71030.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 22625153    to: 22625866    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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