Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------->GT1 <---------TGA1a                                                                                    < --------->TGA1a                                                                            --------- <---------O2                                                                               <-------- --------->O2                                      --------->ANAC46               ------->GAMYB     < ----WOX13(1)                                --------->AHL20(2)   <---------AHL20(2) --------->HSFC1(2) -YAB1  <---------ANAC46                 --------->AHL20(2)   <----------DOF2  --------->MYB52(1)   < -TOE2(3)                 --------->REM1(1)  <---------AHL20(2)   --------->AHL20(2) <---------HSFC1(2)   gacacgagtcgagtatatagataggcttacaccaagaggcccattatatatatacaaaacaggcctttttaatttttggcccaacgacgtttccagcttg  22615200                                                                  ----------->GT1                                                                 >>>>>>>GRF7                                                                <-----------RAV1(2) ---------ANAC58                                              <-----------HVH21 >ZAT2       <---------ALFIN1                              --------->CCA1(2) -ZAT2     ----------->RAV1(1)                            --------->ARR14(2) ---------ANAC58             <---------MYB52(2)           <---------ARR11(3)          <---------YAB1 ---------ANAC46       <------ZmHOX2a(1)                  <---------ARR14(2)    ----------->ARR10   tggcgagagagagcaacacagcgaaggagaaacaaacattttgaattgactgaagaagcagatatgtcaggtttatcgagcttagtttctcatagaaatg  22615300                                                                         <<<<<<<<<WRKY18                                                                     <------NtERF2                                                                    --------->ABI4(2)                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                    ------>NtERF2                                                     <---------AtMYB61 <-----------HVH21                                                   --------->ALFIN1<---------DEAR3(1)             <--                                       <---------HSFC1(2)        ------>NtERF2             --------->ICU4                                       --------->HSFC1(2)        <---------RAP2.3(1)       ----------                                     <---------TOE2(2)           --------->LBD16           <---------YAB1              --------->REM1(1)      <---------TOE1(2)         <---------LBD16      --------->MYB52(1)   gagcaatctctctgttacaactcagtttttcgaaattcggatgtttctctcgagtgtggttttcttccggcgctgtcaaaacttcgaaacgggatgattc  22615400                <---------ANAC58                             --------->HSFB2a(2)                <------MYB46(1)                              <---------HSFB2a(2)                <------MYB83                              --------->ARR14(2)                <---------ANAC58                          <---------ARR14(2)          <---------ATHB12                             <---------ANAC58         ------>MYB83                                  <---------ANAC46         --------->ANAC58                              <---------ANAC58<---------AHL20(2)         ------>MYB46(1)                           <------------CBF<---------AHL20(2) -------At4g35610                                <---------YAB1   --------->AHL20(2)    <----------DOF2 ->ARR10 --------->ANAC58                    <---------GLK1(2)--------->LBD16------------>CBF      --   tgcttctcaccaagcatttggtgtctctggtgagtttgttttcttcatattcttattgcgtttccagatttattttaaaatcaattcaagcttttcatgt  22615500                          ----------->GT1                 --------->ATHB12                --------->ICU4                ------>ZmHOX2a(1)                <---------YAB1             <------ZmHOX2a(2)            <---------ARR14(3)            --------->ARR14(3)            <---------ARR14(2)                          ----------->GT1            --------->ARR14(2)                        <---------ANAC46            <---------ARR11(3)       <---------------AGL15                                       <---            --------->ARR11(3)       --------------->AGL15                                       ----           <------ZmHOX2a(1)       ------------>CBF   <---------ZAT6---------->ID1             ------         <---------TOE1(2)<---------ZAT6              ----------->GT1    <------------CBF     <------ --------->GT1------>ZmHOX2a(2)--------->ICU4  <------------CBF   <-----------RAV1(1)       ------>ZmHOX2a(1)   atagtatatagcaggatcctgattagaagtgtaaaaattcaatttttagaattgtagagtgaaaaattttgtggctattgctgaattttgaatcctatca  22615600        ------>ZmHOX2a(1)       --------->TOE2(3) ------YAB1                                      <---------LBD16   <---------ARR14(2) ----->ICU4                          --------->CCA1(2)             --------->ARR14(2) --->YAB1        --------->HSFB2a(2)<---------ARR11(3)            <------ZmHOX2a(1)        --------->ANAC46 ---ATHB12       <---------HSFB2a(2)--------->ARR11(1)    <---------YAB1                <---------ARR14(2)   tgtttatttcctaaatattctagatgtgtttgactaaagatttgaacttgttggggagttatgaaacaggatttgatatggagaagagcatatacaacat  22615700                    ------>ZmHOX2a(2)                   --------->GLK1(1)                   <---------GLK1(1)                   <------ZmHOX2a(2)                  <---------ARR14(2)                  --------->ARR11(3)                                                     <-----------                  --------->ARR14(2)                                                     ------------            <---------MYB52(1)                                                <----------DOF2           <-------GAMYB                                                     <---------ANAC58          <---------MYB46(3)                                                 <---------ANAC46        <---------At5g28300                                             --------->ZAT2  <------------       <---------WRKY18(1)                                              --------->At4g35610      --------->WRKY38(1)                                               <---------ZAT2  -------------      ----------->HVH21                                                 <---------At4g35610      --------->WRKY12      --------->YAB1                             --------->GLK1(2)=============  <---------YAB1  <---------ARR11(3)            <-------TEIL   <-------TEIL  <---------ANAC58   tcttacaattgaccgttggggatctctaaatcatatggattataggcaggctcgtcttagactggttcatgggaagctggctttgaagtttcttaaatgg  22615800                                                                                             --------     --------->At4g35610                          <-----------GT1                            --------     <---------At4g35610                 <------MYB46(1)                                     -------- ----AGL15                               <------MYB83                                     <---------ZAT2 --->AGL15                             <---------MYB52(1)                                 --------->ZAT2 -----AGL1                            <---------At4g35610                          ----------->HVH21 ---->AG      <---------ANAC46        <-------GAMYB             --------------->AGL15    --------->ANAC58 ===============================================================================MADS_MADS--------->ANAC58   gtagtgaagcagcctggtttggagactgaccatattgttcagttggtctgtattactacacatatactagttagagctagaatgtatgacccagcaagac  22615900                                                                  --------->SPL7                                                                <---------SPL7                                                               <---------ANAC55(2)                                                               --------->ANAC46                           --------->At5g28300                 --------->ANAC55(2)                          ----------->GT1                      --------->TOE1(1)                         <---------ZAT6                        --------->ANAC58     ---------->DOF2  --------->ATHB12        <-----------RAV1(1) ------->TEIL ->ANAC58            <---------YAB1   <----------DOF2  --------->YAB1   <----------DOF2 ->ANAC58       <----------DOF2 <---------ATHB12    <----------DOF2--------->DEAR3(2)            ---- ->ANAC46     <---------YAB1  --------->WOX13(1)---------->ID1 --------->ANAC58                <-----   acatcttaaaagagttatctttgatgagtggtaaatcaagctttgtttttggtgctttgatgaccacgtaccgtctttgcaattcaaacccttctgttta  22616000                                          --------->ARR14(1)                 ------->TEIL             --------->GLK1(2)               --------->ZAT14           --------->ARR14(2)               <---------ZAT18           <---------ARR14(2)      --------->ATHB12                   <---------GLK1(2)     <---------YAB1                      <---------ARR11(3)    --------->ATHB12 <---------ARR11(3)        --------->ANAC58    <---------HSFB2a(2)         <---------TOE2(3) --------->ARR11(3)        --------->ANAC58    --------->HSFB2a(2)     <----------DOF2 ----->ANAC46  <---------ZAT14   --------->ATHB12             ----------->HVH21                 <---- ------GT1     --------->ZAT18  --------->ICU4<---------LBD16<----------DOF2      <-----------GT1   cgacatcttgattagagtgtacttgagggaaggaatgattcaagattctctggaaatatttcgcttgatgggtctttatggattcaacccttctgtatat  22616100  Previous    Next  AGI:  At5g55840.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49916.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75473.1); contains InterPro domain Ankyrin (InterPro:IPR002110); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 22615624    to: 22619725    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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