Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->ARR14(2)                                  --------->KAN4(2)                            <---------LBD16------>ZmHOX2a(2)                           --------->TOE1(2)                           --------->TOE2(2) ------>ZmHOX2a(1)                         -------->P       <------ZmHOX2a(2)                         ------>MYB83    --------->ARR14(2)                         ------>ZmHOX2a(2)                  <---------At4g35610    --------->ARR11(3)                  --------->ARR14(2)                  --------->At4g35610    <---------ARR14(2)                  <---------ARR14(2)                 <---------ARR11(1)   <---------HSFB2a(2)                   ------>NtERF2                 ------->TEIL    <----------TaMYB80                        --------->DEAR3(1)                 <---------ARR14(2)  <---------LBD16                       ----------->HVH21                 --------->ARR14(2) <---------LBD16                        --------->WRKY12                <---------ARR14(1)<---------ARR14(2)                       --------->WRKY38(1)                <---------CCA1(2)<---------GLK1(1)                        --------->ANAC46 --------->LBD16               --------->LBD16   <---------KAN4(1)                       --------->LBD16 ============              <---------ANAC55(1)--------->GLK1(1)                       <---------LBD16 ------>ZmHOX2a(2)              <---------ANAC55(2)--------->HSFB2a(1)                   <---------LBD16  <------ZmHOX2a(2)              --------->ANAC55(2)--------->KAN4(1)                   <---------ARR14(2) =============              <---------ANAC58   <---------HSFB2a(1)                 --------->ARR14(2)<---------ARR14(2)           <---------ARR14(2)   --------->ARR14(2)           --------->TOE1(2)     <------ZmHOX2a(2)       <---------LBD16   ------>MYB46(1) <---------ARR11(3)--------->DAG2--------->At4g35610 ----MYB52(1) <---------ANAC58  ---------->TaMYB80         <---------------AtSPL3 <---------ARR14(2) -----HVH21--------->ARR14(2)--------->TOE2(1)             <---------------AtSPL8 --------->ARR14(2) ->ANAC55(2) ------>ZmHOX2a(2)  <---------ARR14(2)        ---------->DOF2<---------At4g35610<-------- --ANAC55(2)<------ZmHOX2a(2)--------->TOE1(1)      ----------->GT1  --------->GLK1(2) --------->ARR14(2)   atttcagtctctggatccgtatctgccaacctcggatattcgggatcctgaagtctgtgaaaaagtacgagtatccgcggaccggatccgatccggtttt  22598200                                                          --------->HSFC1(1)                                 <---------MYB59          <---------HSFB2a(2)                                --------->MYB46(3)        --------->HSFB2a(2)                               -------->P             <----------DOF2                              --------->MYB52(1)   --------->GLK1(2)                  ---------->DOF2                           --------->ANAC58 ------>NtERF2 <---------HSFC1(1)         ------->GAMYB                           --------->ANAC58--------->DREB2C(2)                      <---------MYB52(2)                   --------->LBD16         --------->ANAC46--------->LBD16          --------->ANAC58    --------->YAB1<---------HSFB2a(2)     --------->MYB46(3)                        --------->ANAC58  <-----------GT1 --------->HSFB2a(2)    <---------At5g28300                <---------ARR14(2) <-----------GT1------>ZmHOX2a(1)------->GAMYB    <---------GLK1(2)         --------->GLK1(2) ======================HOX2a_HOX2a ------>MYB83 ----------->ARR10           --------->ARR14(2) <----- ======================HOX2a_HOX2a ------>MYB46(1)<---------ARR11(3) --------->At4g35610  ----------- -MYB52(1) <----------DOF2 --------->ANAC46--------->DEAR3(1)        <---------At4g35610 --------->DAG2   tttttatcatcttctttcctcccgaacacaagcaaccgaacttcaccgccaagattctttccagaaaaaacagctccaaatctgcaacgaaagagtgaat  22598300                                                                                              <------NtERF2                                                 <-------GAMYB                            <---------ANAC58                                    <---------MYB46(3)                                    <---------ANAC58                                   <---------MYB52(1)                                     <------MYB46(1)                                   <--------P   <---------MYB46(3)   <---------ANAC46     <------MYB83                                  <-------GAMYB<---------AtMYB61     <------MYB46(1)  <---------ARR14(2)  ------->GAMYB                  <---------MYB46(3)    <------ZmHOX2a(1)       <------ZmHOX2a(1) --------->ANAC58              <------NtERF2--------->ALFIN1         <------MYB83   <---------YAB1 --------->ANAC58              --------->At4g35610   <---------TOE2(3)      <------ZmHOX2a(1)------>NtERF2 --------->ANAC46              <---------At4g35610--------->ALFIN1  --------->MYB111(1)  --------->MYB111(1) ----ARR14(2)          --------->CCA1(2)  <---------ANAC46          <---------AtMYB61 --------->ARR14(2) >GT1         >>>>>>>>>TBF1 xxxxxxxxxxxxxxxx>smallRNA(i)        --------->ATHB12 ----------->TGA1   <   ccaacgccaaggggaagaagaagagatagaggcagcggttgtttcggtggaggttgaggatgagggtgatttggtggaggaggatgacgatttggtgcca  22598400                            <------MYB83                  <------MYB83<---------ANAC46                  <---------ANAC46                  <------MYB46(1)                 --------->MYB111(2)                 <---------AtMYB61                 <---------MYB46(3)                 --------->MYB46(2)                               <------MYB46(1)                 --------->MYB111(1)                              <------MYB83            --------->CCA1(2)                 --------->MYB52(2)                              <---------TOE2(3)       --------->ARR11(3)                <---------MYB55(1)                     --------->CCA1(2)                 --------->ARR14(2)               <---------MYB52(1)--------->ETT(2)   ----------->GT1                      <---------ARR14(2)             <---------MYB46(3) <------NtERF2     <------ZmHOX2a(1)                      --------->ARR11(1)         <---------AtMYB61  <------MYB46(1)--------->ATHB12      --------->MYB59         <---------ARR11(3) <---------MYB46(3)    <---------RAP2.6(2)--------->ICU4     <------ZmHOX2a(1)         ----------->ARR10 ---------AtMYB61--------->MYB55(2)    <------ZmHOX2a(1) ---------->DOF2          <----------ID1  ---   tggtggtagagatggtcgtttggtggaggctggtgtcgagaggaatgagtgaggaagataaaaggattaggttttttggaaaatgggccaagatatgggc  22598500                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                              <---------GLK1(1)                                                                              --------->GLK1(1)                                                                              <----------TaMYB80                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                                                           --------->LBD16               <---------AHL20(2)                                        ------>ZmHOX2a(2)              --------->AHL20(2)                                         <---------LBD16              <---------AHL20(2)                                        <------ZmHOX2a(2)          <---------ICU4                                               <---------ARR14(2)         <---------YAB1                                                --------->ARR14(2)         --------->ICU4                                              --------->LBD16       --------->YAB1                                              <-----------------AGL1      <---------YAB1                            --------->YAB1     <---------LBD16 --------->LBD16     --------->ARR11(3)             --------->AHL20(2)             ----------------->AGL1     <---------ARR11(3)             ---------->DOF2           <---------ICU4 ---------->TaMYB80     <    --------->RVE1(1)              <---------ATHB12          xxxxxxxxxxxxxxxx>smallRNA(i)         ---    --------->CCA1(1)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->MYB52(1)<-----------HVH21 -------->GT1--------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------GT1 <---------LBD16 <---   tggaaaatatcataattttaatttttagtatggcccaataaaacccataaacataaaacattgaatattaccggatccggatatccggtcatatttttta  22598600                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                             <-------                                                                                           --------->LBD16                                                                                          <---------HSFB2a(2)                                                                                          --------->HSFB2a(2)                                                                                         ------------                                                                                         ------------                                                                                         <-----------                                                                                         <-----------                                         --------->ANAC46           <----------DOF2      ------------                        <---------AHL20(2)                         <----------DOF2       <xxxxxxxxxxx                        <---------AHL20(1)        <-----------HVH21--------->ARR14(2)   <xxxxxxxxxxxx                        --------->AHL20(1)  --------->ARR14(2)    <---------MYB52(1)   <---------ARR14(2)                  --------->CCA1(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxxxxxxxx                 <---------ARR14(2)      <---------HSFB2a(2) <---------ARR14(2)        --------->ARR14(2)                <------NtERF2         <---------ARR14(2)     --------->ARR14(2)      --------->LBD16               <---------MYB46(3)     --------->ARR14(2)    <----------TaMYB80      --------->LBD16          --------->ATERF1(1)        <---------CCA1(2)      <---------GLK1(1)      <---------LBD16          ------>ZmHOX2a(2)         --------->LBD16        ---------->TaMYB80     ------>ZmHOX2a(2) -          <---------LBD16<---------ICU4  --------->HSFB2a(2)--------->GLK1(1)     xxxxxxxxxxxxxxxx>smallRNA(i)         <------ZmHOX2a(2)        ===================================================================        --------->ARR14(2)        <-----------------AGL1   <---------ARR14(2)    <------ZmHOX2a(2)  <        <---------ARR14(2)        ----------------->AGL1--------->ANAC58    <------ZmHOX2a(2)--------      --------->LBD16   --------->AHL20(2)--------->LBD16  --------->ARR14(2)------>ZmHOX2a(2)-------    <---------LBD16  --------->AHL20(2) <---------LBD16 --------->ANAC55(1)<---------ARR14(2)--------  <-----------GT1--------->ARR14(2)--------->ANAC55(2)  --------->ANAC58   --------->ARR14(2)<------- ---------YAB1<---------ANAC46    ----------------->AG <---------LBD16 <---------LBD16xxxxxxxxxxxxxxx ------>YAB1 <---------LBD16      xxxxxxxxxxxxxxxx>smallRNA(s)   --------->LBD16--------->ARR14(2) -- ------YAB1 --------->LBD16 <-----------GT1 <---------ARR14(2) <---------LBD16  <---------ARR14(2) <-   tgattatccggatccggcggatataaaatattactatccgtatccggaaccgtttcacacggatatccggtttttcggatcggatcccggttccagatac  22598700         <---------ARR14(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->LBD16     <---------LBD16    --------->ANAC46   <---------LBD16 -----ANAC55(2) ----LBD16 --TEIL--------->LBD16 -->ARR14(1) --ARR14(2) ----->AGL2 ----->AGL1     <---------ARR14(2) ------AG--------->ARR14(2) ------AGL1     --------->ARR14(2) ----->AGL3   --------->LBD16 xxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(fl3)   --------->HSFB2a(2) -------->GLK1(1)         <---------HSFB2a(2) ======MADS_MADS<---------ARR11(3) ---------GLK1(1)<---------GLK1(1) ->ARR14(2)  --------->LBD16               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------AHL20(2) -->CCA1(2) <---------LBD16      <------------CBF                      <---------GLK1(1) ->ARR11(1)------>ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->GLK1(1) --GLK1(2)<------ZmHOX2a(2)--------->LBD16--------->ARR14(2)          --------->ARR11(3)  <---------ARR14(2) xxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ARR11(3)  --------->ARR14(2) ------->ARR14(2)--------->GLK1(1)       ----------->TBP    <------ZmHOX2a(1)   <---------AHL20(1) --------ARR14(2)<---------RVE1(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->AHL20(2)---   ggatacccgcggatcccggatatttgttccagggctattggctatatatgcaagagggagaaggagaagaaagatatcacaaaaaatttccaaatcccca  22598800                               ---------->DOF2                         <---------ARR14(2)           <---------------AGL15                  --------->ALFIN1                    --------------->AGL15                 --------->LBD16                     ----------------->AGL2                 <---------LBD16                     <-----------------AG                <---------ANAC58                     <-----------------AGL3                 <--------                <---------ANAC58                     ----------------->AGL3            --------->ANAC58                <---------ANAC55(1)      <------------CBF                              --------->ANAC58            <---------GLK1(1)<---------YAB1          <-----------------AGL2    --------->MYB52(1) --- ------>ATHB51  <---------ANAC46      <------ZmHOX2a(1)                    --------->ZAT6------->GAMYB   ttatcgaaaccatgagttccgtgggagtattttgaaaggaggaaattgatggaaaaccatttttggtatacacattaacacaaacagacaacccaaactc  22598900                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(2)     ----                                                                         --------->ANAC55(1)    <----                             <------NtERF2                               --------->ANAC58     -------                     --------->GLK1(2)                                   --------->ANAC58   ---------                    <---------ARR14(2)                            ------>ZmHOX2a(1) <---------YAB1                    --------->ARR14(2)                     <---------AtLEC2 ------->TEIL    <-------- -ALFIN1--------->ATHB12<-----------RAV1(1)              <-----------GT1 --------->ANAC46  --------->ANAC46 --->ZmHOX2a(1)     <---------GLK1(2)                <----------DOF2  <---------ZAT18--------->YAB1   ctccagtgaatcactggccatggattctggtggccataaactccctcttcaacctcttttttcatgtcctagttcacgtatcaattttcataagcgcaat  22599000                                                                                                   --                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                          --------->HSFB2a(1)                                                                                         --------->ARR14(2)                                                                                         --------->GLK1(2)   --------->YAB1                                        ----------->RAV1(1)             <---------ARR14(2) ----->YAB1                                              --------->ANAC58                <-----------ARR10 -----ATHB12                                             --------->ANAC58                <---------ARR11(1) -->WOX13(1)                                           --------->LBD16                   ------->TEIL >ZAT18                                         <---------ALFIN1          --------->ICU4<---------CCA1(2) -ZAT18                     <-----------GT1  --------->ANAC46---------->DOF2            <---------ARR14(1)   cacattgatggtcatgagactcaagagttttatccattcaattgttcccctcacttccccagcaaaagaaccagtactgatcaagaaggcgaatctttcc  22599100  Previous    Next  AGI:  At5g55790.1    Description:  unknown protein Range:  from: 22597896    to: 22598561    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g55800.1    Description:  DC1 domain-containing protein. similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55780.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10370.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G26550.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain C1-like (InterPro:IPR011424); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DC1 (InterPro:IPR004146); contains I Range:  from: 22598920    to: 22600656    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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