Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------At4g35610                        --------->YAB1                        <---------ICU4                        <--------ATHB1                       <---------ATHB12                                        <---------At4g35610                   ----------------->AGL3                               <---------ARR11(3)                   ----------------->AGL2                               --------->ARR11(3)          --------->REM1(1) --------->ZAT2                          ---------->DOF2    --------->ARR14(2) <---------ATHB51                         <---------HSFB2a(2) --->ANAC46  <-----------HVH21 ------>NtERF2                    --------->HSFC1(1) --->ANAC55(2)   --------->ANAC46           <---------ICU4      <---------HSFC1(1)              <---- --HVH21------>ZmHOX2a(1)   --------->At4g35610     ------->TEIL--------->HSFB2a(2)     ---------->DOF2   taacccaatcctacatttcacaccaataatagctgcccaagagaaaacattacgaaccctcaatttcgagaaaagaacttcagcaatctccaaagcatcg  22581300                                                                                                    <              <-----------GT1                                                                  ------            --------->ARR11(3)                                       <---------ARR14(2)      --------      <------NtERF2                                     <---------At5g28300           <---------ANAC58    <---------ANAC46                       ------>ZmHOX2a(1)<---------MYB52(1)        <---------ANAC58    <---------ANAC58                 <---------ICU4    <-----------GT1   --------->LBD16   ----------    <---------ANAC58              ------->TEIL<---------ANAC46 <----------DOF2   ------->TEIL<------- -----ZAT18 <---------ARR11(3)--------------->AtSPL8<---------GLK1(1)--------->ARR14(2)   <---------ANAC46   cacttggcgtagaatatcaccaatttagtctcgatgtactcattcctcgcgtagaaatcaccgttctttaaaatccgagcatgaatttgcttccctgtac  22581400                             <-----------ARR10          --------->ANAC55(2)                            <------ZmHOX2a(1)           <---------ANAC58               --------->ANAC46          --------->ARR11(3)               --------->ANAC58          <---------ARR11(3) ---------CCA1(2) ------->TEIL          <---------CCA1(2)      --------->GLK1(2) ->TEIL        --------->ANAC58   <---------At5g28300   <---------ANAC58 ->ZAT14    --------->ARR14(2)--------->GLK1(1)         <---------ANAC55(2) ----->AtSPL8<---------DOF5.7(2) <-----------GT1   --------->AtMYB61 --------->GLK1(1)              < --ZAT14    <---------ARR14(2)<---------GLK1(1) <------ZmHOX2a(1)    <---------GLK1(1)              -   ttaaatctctctcgtaaacgcatccttggaggatttcaccgtatatctcaggaccaatgcgtaagtttctgaaatccatctctgtaactaaactcagagc  22581500             <---------MYB52(1) --------->ANAC58         <---------At5g28300    --------->ANAC58        <-----------GT1       ---------->DOF2       ----------->HVH21   --------->ANAC58      ------>ZmHOX2a(2)  --------->CCA1(2)                     <---------KAN4(2)     <---------At4g35610<----------ID1            --------->ALFIN1                            ------- ----------DOF2     ---------->DOF2    ---------->DOF2     <------ZmHOX2a(1)                  <------ -------------------->WRI1 --------->ANAC58    --------->ARR11(3)                 <---------ANAC46   ttctttgatctcaccgttcttacaaagagacgaaacgcgatgaaagtaagatgtggaagaaggagaatgagcttgttcatcgtggtgtttagaagaaggt  22581600                          <---------LBD16        <---------------AGL15        --------------->AGL15       <-----------------AGL3       <-----------------AGL2       <-----------------AGL1                            --------->YAB1                            <-   --------->YAB1        <---------LBD16          --------->ANAC58                              <---- -->HSFB2a(1)       <----------DOF2    ---------->DOF2  <---------ATHB12  --------->ANAC46      ----- ---HSFB2a(1)       <---------DAG2<---------ZAT6  --------->ANAC58  --------->YAB1             ------   ttcgatgatactgaaaatggaactttattcgggatagtgttgaaaggaagagaagccattcatgcctctctgataaacgtctctgaagataaaacagagt  22581700                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                                 ----                         <---------AHL20(2)                                                      ----                      --------->AHL20(1)                                                         ----                     --------->AHL20(2)                                                          <---                     <---------AHL20(2)                                                         -----                    --------->AHL20(2)                                                          <----          --------->TOE2(1)   <---------AHL20(2)                                                <----          --------->TOE1(1)  --------->AHL20(2)                                                 -----         ------>ZmHOX2a(1)   <---------AHL20(2)                                                 <----     <---------ARR14(2)  --------->AHL20(2)                                  <---------ANAC58   <----     --------->ARR14(2)  <---------AHL20(1)                                  <---------ANAC58   ----- ---------DOF2      <---------AHL20(2)              ----------->GT1    <---------MYB52(1)       <---- -----ARR11(3)      <---------AHL20(1)          <----------DOF2       =============================== ---->ARR11(3)  --------->AHL20(2)      ------>ZmHOX2a(1)         <---------ALFIN1     <---------ARR14(2) --->GLK1(1)    <---------AHL20(2)<-----------GT1   <---------ANAC46  <-------GAMYB    --------->ARR14(2)   tctttcgaatcctcgtatttaaattattttatttattatctcctcgacttcttttcgtaaaatgttctccaccgttgattcttgtggcaaatacagacac  22581800 ------->REM1(2) ----MYC3 ----MYC4                                                   -------->P --->MYC3                                                   ------>MYB83 --->MYC2                                                   ------>MYB46(1) --->MYC4                                                   --------->MYB52(1) ----MYC2                                                  --------->MYB55(1) ---->O2                                                  --------->AtMYB61 -----O2                                                  --------->MYB46(3) -----TGA1a                                               <---------MYB111(2) ---->TGA1a                             ------>ZmHOX2a(2) <---------MYB46(2) ----ABF1  <---------At4g35610<---------------AtSPL3  --------->ZAT18 -----ANAC46             <---------ANAC55(2)   <---------ANAC46 <---------MYB52(1)                  - ---->ANAC55(2)          --------->ANAC55(2)  <-------TEIL<---------MYB55(2)                  <------ -----ANAC55(2)         <-------TEIL   <------ZmHOX2a(2)  <---------MYB111(1) ------>ZmHOX2a(2)   <-- =====MYC_MYB  <---------MYB52(1)<-----------GT1  <---------TOE1(2)         --------->ARR11(3)-------   gtgtacggttttcatctgttactcgatacatatttgtaccgatcgcgattcgtatgtgtaccaaccggttttcgatttgatctcggtttagttgaattat  22581900                         --------->YAB1                      <---------AHL20(2)                     --------->AHL20(2)             <---------AHL20(2)             --------->AHL20(2)                                                                  ----          <---------AHL20(1)                                                              <---------TOE2(3) -------->TOE2(3)    <---------AHL20(2)                                            <---------AHL20(1) ---ICU4  --------->AHL20(1)                  <----------ID1                       --------->AHL20(2) -------TOE2(3)  <---------AHL20(2)         --------->MYB52(1)     ---------->DOF2 <---------AHL20(2) -->YAB1 --------->AHL20(2)            ---------->DOF2  --------->AHL20(2) <---------AHL20(2) -------   aacgttgaaaaatatataattcatttattagaatatacttcaaaagtaacgacaaaaaaaaaatacttcaaaagtatataaacaaaaaatttgagataat  22582000                                                                                             --------                                                                                           --------->ANAC46                                                                                           --------->ANAC58            ----------->HVH21                                            ---------->DOF2   --------->ANAC58     >>>>>>>>>TBF1             --------->AHL20(2)              ---------->DOF2    --------->At4g35610 ----->MYB52(1)      <---------YAB1 <---------ICU4          <---------MYB59       <---------At4g35610 -->YAB1  ----------->GT1    <----------DOF2     --------->TOE2(2)      --------->YAB1 --------->ZAT6   aacagaagaagaaggtgacattttttataggcttttaatatttatctgaaacctatgtatgacctaaaagacaataaaagcattagctaacacaagcatc  22582100                                                                                           <---------ALFIN1                                                                                           ------->GAMYB                                                                                           --------->DREB2C(2)                                                                                          --------->MYB46(3)                                                                                          <------NtERF2                                                                                          --------->DEAR4(2)                                                                                          --------->ORA47(2)                                                                                          --------->ATERF1(1)                                                                                         ------>NtERF2                                                                                         <---------ATERF1(1)                                                                                        <---------ALFIN1                                                                                        --------->DEAR3(1)                                                                                       <---------ABI4(2)                                                                                       <------NtERF2                                                                                       --------->ERF1                                                                                       --------->ATERF1(1)                                                                                       --------->MYB46(3)                                                                                      <---------ATERF1(1)                                                                                      <---------RAP2.6(3)                                                                             ------>ZmHOX2a(1)    ---                                                                          ------>ZmHOX2a(1)--------->DEAR3(1)                                                                    ------>ZmHOX2a(1) <------NtERF2                                                              <---------ATERF1(1)    --------->ANAC58                                                             <---------ARR14(2)      --------->ANAC46                                                             --------->ARR14(2)      <---------ATERF1(2)                                                    --------->DEAR3(1)   <---------ALFIN1--------->ABI4(1)                                                   --------->DEAR3(2)  ------>ZmHOX2a(1)--------->AtMYB61                                                  <---------At5g28300 <---------ALFIN1------>NtERF2                                                  --------->SPL7   <---------ALFIN1  --------->DEAR3(1)                                                 <-----------GT1 ------>ZmHOX2a(1)   --------->ATERF1(2)        --------->LBD16                  ------->TEIL------>NtERF2 <xxxxxxxxxxxxxxxxsmallRNA(se3) ---      <---------LBD16<------ZmHOX2a(1)----------->HVH21     <---------At4g35610      --------->ANAC58    <---------ARR14(2)       --------->ANAC58   <---------SPL7------>NtERF2 <---------ALFIN1------>NtERF2    --------->ARR14(2)       --------->ANAC58<---------MYB52(1) <---------ALFIN1     --------->RAP2.6(2) ->YAB1--------->ANAC46  --------->YAB1 <---------ARR14(2) <---------ATERF1(1)      <---------RAP2.6(2)   aaaacatatacgggaatggaagaggaatagtaagccatcgctgaaccggttgtaccgccttcggctcctcctcctcctcctccttggccgccaccgcctt  22582200  Previous    Next  AGI:  At5g55740.1    Description:  CRR21 (CHLORORESPIRATORY REDUCTION 21). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65596.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 22579167    to: 22581659    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g55750.1    Description:  hydroxyproline-rich glycoprotein family protein. contains domain PTHR12802:SF3 (PTHR12802:SF3); contains domain PTHR12802 (PTHR12802) Range:  from: 22582027    to: 22583247    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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