Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                            --------->LBD16                     <----                         --------->MYB52(1)                ------->GAMYB  <------MYB46(1)      <-----                    <------ZmHOX2a(1)                     <------------MYB.PH3(1)       --------->MYB46(3)                 <---------At4g35610                    <-----------GT1 <--------P     ------>MYB83>>                 <------NtERF2                          --------->ARR14(2)<------MYB83 ------>MYB46(1) ----GAMYB       --------->At4g35610       <---------ICU4<---------At5g28300         --------->AtMYB61   gttgtaatccatagtaggcagaggaaacaactgatactgctcaaaacattgccgattgtaaccgcataaaccaagttggtcattagaccaacaactagtg  22566400                                             <---------At4g35610                                   ------>ZmHOX2a(2)                                 <---------ARR11(3)                                 <---------ARR14(2) <------ZmHOX2a(1)               <---------AGP1                                 --------->ZAT14 ---------RAV1(2)                --------->ARR14(2)                             <---------ZAT14     < -------HVH21                   <---------CCA1(2)                          ---------->DOF2         -- ----ZAT6       ==========================HOX2a_HOX2a                     <---------AHL20(2) <------- >>>>>GRF7      ------>ZmHOX2a(1)--------->ARR11(3) --------->AtLEC2      --------->AHL20(2) <-------   tcaggaaatgtctgattcctattcgtagcctcttggatcttgttttctactgccatgaaaaccgcatagaggtcatttaaagaacactggtcgagctttt  22566500                                                                                                 ----                                                                                                <----                                                                                               <-----                               --------->ARR14(2)                                          <---------ZAT2                             <---------MYB46(3)                                            <---------At4g35610                   --------->ETT(1)  <---------ALFIN1                                      --------->At4g35610                  ---------->ID1  <-----------GT1                         --------->At5g28300  <-----          --------->ARR14(2)<---------TOE1(2)<---------ZAT6  <---------ATHB12     <---------ANAC46 -----------------AGL1  <---------ATHB12--------->TOE2(3)   --------->ANAC46      <---------ANAC58 -------->ID1 <----------DOF2<---------DEAR3(2)             --------->ANAC58      <---------ANAC58  - --DAG2   <---------ARR14(2)<---------DEAR3(1)              --------->ANAC58  ------->TEIL --------->ZAT2 ---DOF2 <------ZmHOX2a(1)  <---------TOE2(2)<-----------RAV1(1)      <---------AtLEC2   <-----------RAV1(2)   tgtcccatgtaggatactttgtcgcaatcgtcggtttctccaccttagtgttgtttttctccaagcattcttgcacggtgtatgtcttggtgcagctgct  22566600                                    <----------DOF2                               --------->ANAC55(2)                               --------->ANAC46                               --------->ANAC58                                              <-------                               --------->ANAC58                                         --------->ZAT2                         --------->ARR11(3)                                             <---------ZAT14                         <---------ARR11(3)                                             --------->ZAT14                       <---------TOE2(3)                                             ----------->RAV1(2) ------->HVH21         <---------TOE1(3)                                        <---------ANAC58    - -----WOX13(1)------->TEIL<---------GLK1(1)                             <---------WRKY18(1)  -------- ----ANAC58 <---------ZAT14   <---------LBD16                   <---------ATERF1(1)  <---------At4g35610 ----ANAC58 --------->ZAT14  <-----------GT1                  <---------LBD16   <---------ANAC58  --- -------->ANAC46       <---------YAB1            ------>ZmHOX2a(1)     ----------->HVH21<---------ZAT2   tgacgcagtgtctctgtacttggttaagatttcacggactttgctcccatcctttggccataactcgggctccatgaccatttcgtcccctgctctgctc  22566700                                    <---------ZAT14     --------->ANAC58              --------->ALFIN1     --------->ANAC58        --------->LBD16    --------->SPL7           --------->ZAT14    --------->ZAT14          <---------ZAT14    <---------ZAT14         --------->DEAR3(1)                              ------>ZmHOX2a(1)  <---------SPL7           --------->ANAC46                                --------------->AGL15 <---------ANAC46        --------->ANAC46                                 ----------------->AGL1 --ZAT2                  <---------ALFIN1                                 <-----------------AGL1 -------------->AtSPL3 <---------ALFIN1              <----------DOF2   <----------DOF2           ---- ->ZAT2               --------->ZAT18               <---------ANAC58  <---------ANAC58     <---------MYB52(1) --------------->SPL14<---------ZAT18               <---------ANAC58  <---------ANAC58     --------->DOF5.7(2)   gggccgtacacaatgacacaagtgtccacaccgcagagtgttgagaactcactggctttcttatacaaacatgctttcctcttcttgtaagtcgttatcc  22566800                         <---------ICU4                    <-----------HVH21                    <-----------TGA1                   --------->bZIP60(2)                   --------->ANAC46            <---------MYB52(1)                                    >>>>>>>>>RAP2.2           <-------GAMYB--------->ICU4                            --------->TOE2(3)          --------->MYB52(2)                           <----------DOF2             ----------->GT1          <---------MYB46(3)                       --------->GLK1(1)    --------->ANAC58         <---------TOE1(2)  <-----------GT1       <---------ARR14(2)    --------->ANAC58     --------        <---------MYB52(1)<----------DOF2         --------->ARR14(2)  ---------->DOF2     --------->ANAC46 -->ZmHOX2a(1)    ------>ZmHOX2a(1)       --------->MYB46(3) ------------>CBF  ---------->DOF2-------   tcgttttctcgttcgttatcctcgtcatctttaccatctttcgacccatccagatacctttgcttcaatctaaaaagccataaaagagtaaaacacaaca  22566900                                   --------->ATHB12                                   <---------ICU4       --------->GLK1(2)          <---------YAB1           --------->AtMYB61                       --   --------->YAB1              <---------YAB1            -------->P                                <-  <------ZmHOX2a(2)           --------->ARR11(3)      --------->ZAT2                        --------- --------->ARR11(3)           <---------ARR11(3)      --------->At4g35610                  --------->AtMYB61 <---------ARR11(3)     ----------->GT1               <---------At4g35610                  ------->GAMYB --->RAV1(1)            --------->YAB1             <------ZmHOX2a(2)      --------->ZAT6  --------->MYB46(3) ----->CBF      <------------CBF--------->YAB1   ------->GAMYB     <-------TEIL      <-----------GT1-   atagatcataatcttgaaaattgaaatagtaatatcatcatttggatgtaacgatcagctaccaaaacatacagaaacactacaaatttacaaccaaagc  22567000                              --------->AHL20(2)                    <---------TOE2(3)  --------->ZAT6              <---------AHL20(1)                   <-----------GT1 ------------->AGL15          <---------AHL20(2)                  <-----------GT1 --------------AGL15       --------->AHL20(2)         <---------TOE1(3)               --------->ANAC58 ->DOF2                    --------->YAB1             <---------TOE2(3)       ------------>CBF -------->YAB1        ------------>CBF            <----------DOF2--------->AHL20(2)   --------->ANAC58   actaatactagtaaacattttgttgtcaataaaaaatttgtaactcatatagcttttaggtttacattttaacatttcatagcaatgtaagccttacaaa  22567100                                    --------->AHL20(2)                         <---------AHL20(2)               --------->TOE1(3)                         --------->AHL20(2)               --------->TOE2(3)            <---------ICU4                      <---------AHL20(2)     --------->YAB1------>ZmHOX2a(1)    ------>ZmHOX2a(1)                    <---------AHL20(2)   --------->ZAT6  <---------ICU4  --------->ANAC58      ------                --------->YAB1 ------------>CBF    --------->YAB1        --------->ANAC58      <-----               <-------TEIL   --------->TOE2(3) --------->YAB1   <---------MYB52(1) --------->YAB1   tgtatagggaagaaagattcatattattttattctcaattttttcactaataagcataatccttatcgttttgtcaagcttcctatgcataattccaaat  22567200                  --------->YAB1               --------->AHL20(2)                  ----------->GT1            ----------->GT1           --------->ZAT6                   --------->DAG2                                 --------->ARR11(3) <---------ARR14(2)                        ---------->DOF2       --------->HSFB2a(2)   <---------AHL20(2) --------->ARR14(2)                     --------->YAB1           <---------HSFB2a(2)------->TEIL --->ARR14(2)--------->ANAC58          <---------TOE2(3)     --------->ICU4      ----------->GT1 <--- ----ARR14(2)--------->ANAC58          <---------YAB1      --------->ATHB12---------->DOF2<----------   ccatatacgattaacacgaatagtaaaacagatgggatattaacataaagtaaatgcagagtgattactagaagaaaaaaagaatgtatataataccttc  22567300  Previous    Next  AGI:  At5g55690.1    Description:  MADS-box protein (AGL47). similar to AGL82, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G58890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81313.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 22566016    to: 22566849    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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