Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ZAT6                                     --------->ATHB12                             --------->AtMYB61                                    --------->ICU4     <---------ANAC58        <---------ALFIN1               <-----------GT1      <---------YAB1     <---------ANAC58       <---------ZAT18  --------->TOE1(2)                 <------ZmHOX2a(2) <-----------------------TaNAC69(2)   ---------- --->ANAC58 <---------AHL20(2)     <---------ARR11(3) <---------HSFC1(2)    --------->At4g35610 --->ANAC58 <---------YAB1         --------->ARR11(3) --------->HSFC1(2)    <---------At4g35610   agaccctgcgaaatattattccctctaggtgcctcgagatcattagcccgattagaagcttgccctagctcaactctcagcccacctccagtaccagtac  22563600                                                      --------->ARR14(2)                                               --------->At4g35610                                               --------->ZAT2                       <---------ALFIN1                                               <---------ZAT2                 <---------ICU4                 ------>ZmHOX2a(1)          ------>ZmHOX2a(1)              --------->bZIP60(2)                --------------------->WRI1  --------->LBD16              --------->AtMYB61            --------->HSFB2a(1)           ----------->RAV1(2) ---------->DOF2 --------------->AtSPL3            <---------HSFB2a(1)   --------->TOE2(3)   <---------ARR14(2) <---------ALFIN1           -          <---------GLK1(2)  <---------ANAC58  <---------At4g35610       ----------->RAV1(1)       <-         <------ZmHOX2a(1)   <---------ANAC58  --------->GLK1(1)     --------->MYB46(3)          ---- ----->AtSPL3  ----------->RAV1(2)--------->TOE1(3)  <---------CCA1(2)--------->AtMYB61   <---------ALFIN1   caattccaccaggaatctcctggctaacatcgcttaccttaacctcctgagctccatatccactagaagcgaccaccacatcagtaccacttccacttcc  22563700                                               ------>MYB83                                             --------->AtMYB61                                             ------->GAMYB                                             <---------MYB59                                            --------->MYB46(3)                                           ------>MYB46(1)                                           ------>MYB83                                           -------->P                                          --------->MYB55(1)             <---------At4g35610         --------->MYB46(3)                     --------->TOE2(3)      ------>ZmHOX2a(1)                  <---------MYB46(2)                  --------->REM1(1)      ----------->HVH21                  <---------MYB111(2)             <---------ZAT2    ----------->RAV1(2)                  --------->DEAR3(1)              <---------At4g35610   ------>ZmHOX2a(1)                     --------->AtMYB61               --------->At4g35610       --  <---------ALFIN1               ------->GAMYB ------>MYB46(1)           --------->ZAT2            <- ----->ZmHOX2a(1)       <----------DOF2  <---------MYB55(2)          --------->TOE1(3)            <-- --------ALFIN1    <---------At4g35610   <---------MYB111(1)         --------->TOE2(3)          ----- -->ZmHOX2a(1)  <---------At4g35610     --------->MYB46(3)        --------->ARR14(2)         <-------   tcctcctcctgactctgcttctgcttctttctcaacgctctcaccaaccaaaccaggtatcgaaatcgaaacctcagcttcacctaaaactggttcaacc  22563800                                                      ---------->ID1                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           <---------ARR14(2)                                           <---------ARR11(3)                                        <---------HSFB2a(2)                                         -                                        <---------HSFC1(1)                                      <----      ------>ZmHOX2a(1)                 --------->HSFB2a(2) <----------DOF2                    <----- ------->ARR14(2)                ===================HOX2a_HOX2a                             --------- --------ARR14(2)                ==================HOX2a_HOX2a                              --------- -------CCA1(2)            <---------DAG2  --------->ARR14(2)                            ----------->RAV1(1) -->GAMYB        <-----------GT1 ------>ZmHOX2a(1)<----------DOF2                     --------->HSFB2a(2) ----GT1 ------>ZmHOX2a(1) <----------DOF2 --------->ARR11(3)   <---------YAB1<-----------GT1--------   ctatcttcctcctccatattaaccttctccttttcctcgtttctagatcccgcttcgtcgttctttttcatagactgaagaaacccttctccaacattaa  22563900                       <---------YAB1                     --------->YAB1                    --------->ICU4                  --------->YAB1                                  <---------ARR14(2)                  <---------ICU4                             ------->GAMYB            ==============================HOX2a_HOX2a       --------->ANAC58            ========================HOX2a_HOX2a     <-----------TGA1           ===============================HOX2a_HOX2a       --------->MYB46(3)           <------ZmHOX2a(2)                       --------->TGA1a--------->ARR14(2)           =========================HOX2a_HOX2a    ==================MYC_MYB          <---------ARR11(3)                     <-----------HVH21<---------ARR11(3)          --------->ARR11(3)               ---------->DOF2  --------->ANAC58          <---------ARR14(2)               ==================bZIP_DOF          <---------ARR14(3)          ------>NtERF2<---------ETT(2)<---------GLK1(1)          <---------GLK1(2)           ----------->RAV1(1) --------->MYB52(1)        ----------->ARR10             --------->LBD16   --------->At4g35610      ---------->DOF2<---------ICU4  --------->DEAR3(1) <---------At4g35610 ---------->GT1  --------->ICU4      --------->ANAC58  --------->ANAC58 -----TOE2(3)  --------->YAB1        --------->ANAC58  --------->ANAC58 ----DOF5.7(2)------>ZmHOX2a(1)      --------->ANAC46--------->TGA2(2) >TOE1(3) --------->ARR14(3)        <---------LBD16--------->ETT(2)--------->GLK1(1)            ----- >TOE2(3) --------->ARR14(2)       ------>ZmHOX2a(1)<-----------HVH21                           <---- ->DOF5.7(2)------>ZmHOX2a(2)------>ZmHOX2a(1)  --------->ANAC46  --------->ARR11(3)         ------>ZmHOX2a(2)   cgtcgttataaagatcctcataatcatcatcctcttcctccgccataaacccgtcgtcagcaacggcagatatcgcctcgttttgatgaaattgatccat  22564000                                                                                                 ----                                                                                            ---------                                                                  --------->HSFC1(1)       --------->ANAC55(2)                                                      ---------->DOF2            <-----------GT1 <---  ------>ZmHOX2a(2)                    <---------ANAC58           <---------HSFB2a(2)--------->ANAC58 --------->GLK1(1)                     <---------ANAC46           --------->HSFB2a(2)--------->ANAC58 ------>RAV1(2)                        <---------ANAC58--------->DAG2   --------->YAB1     <---------ANAC55(2) -----At4g35610             ---------->DOF2<---------YAB1     <----------DOF2    --------->YAB1 <----   ctgatctctcccatctccctcatccatcttaaaagactcttccttgtgataaaaaaaaaagctcctttctcgaatcagatttatcacaagcttacgttat  22564100                                                                                             --------                                                                                            <--------P                                                                                           <---------MYB52(1)                                   --------->ARR11(3)                                     --------->LBD16                                   <---------ARR11(3)            <------ZmHOX2a(1)----------------->AGL1                          ---------->DOF2                  ----------->HVH21      --------->TOE2(3)                         --------->AHL20(2)              --------->LBD16          ----------------->AG ----->ZAT6         ------------>CBF                   <---------At4g35610        --------->TOE1(3) >TOE2(3)          --------->YAB1  <---------GLK1(2)   <---------LBD16     --------->HSFB2a(2)    --- --------GT1       --------->TOE2(3)                   --------->At4g35610 <---------HSFB2a(2) <----- -----YAB1    ------------>CBF    <---------RVE1(1)<-----------HVH21 <-----------RAV1(1)<---------LBD16   cactcgctcgaacatgaacaatctcaataaaagaagagattttgcagaaattttgtcaccggagacaggacctgttgctagaaaccctaatccggtagat  22564200                                                                                                  <--                                                                                             <-------                                             --------->AHL20(2)                              --------                                             <---------AHL20(2)                              <-------                                         <---------YAB1                                      --------                   <----------DOF2      --------->AHL20(2)                                 <---------SPL7        <---------ANAC46                <---------AHL20(2)                                 --------->ZAT14        <---------ANAC58               --------->YAB1                                     --------->DEAR3(1)        <---------ANAC58               --------->AHL20(2)                               ------->TEIL      --------->ARR11(3)           <---------YAB1<---------AHL20(2)                    -------------- --->ARR10  <------------------------ANAC81 <---------AHL20(2)                       --------->ANAC58 -------->GT1   <-----------GT1   ------------>CBF      ------>ZmHOX2a(1)            --------->ANAC58 ----ARR14(2)<---------GLK1(2) <----------DOF2 <---------YAB1                        --------->AtLEC2   ttgtgaaatttcttggattttcttttttgatttctttacaattaaaattatttttttcctcgatggaatccaactaatttcactaacatgcaccgtacac  22564300                                       <-------MYC2                                       ------->MYC4                                       <-------MYC4                                       ------->MYC2                                       <-------MYC3                                      --------->ANAC55(2)                                      <---------ANAC55(2)     <------------CBF                 <---------TGA1a  --------->ANAC58                    <---------O2  --------->ANAC58                    --------->O2  <---------ANAC46                    --------->TGA1a <---------LBD16                      <--------ABF1                                       ----------- ---------HVH21                  ----------->HVH21                            <---------ANAC55(2) --REM1(2)                --------->ZAT14                    <---------MYB52(2)  ------->MYC3 ->SPL7                   <---------ZAT14       --------->LBD16--------->MYB52(1)<-------MYC3   ----- --ZAT14                 <---------ZAT6------->MYC3     <---------HSFB2a(2)<---------ARR14(2)  ------ ->ZAT14        ================================bZIP_DOF--------->HSFB2a(2)--------->ARR14(2)  <----- ---->SPL14     <----------DOF2<---------At4g35610   <-----------GT1--------->MYB46(3)  --------->YAB1   agtcgcgcattgtagagcctttttctagtgtagagatgacacgtgttttccgaatttacgagaactaacaacaatccaatacgcgtggtttcatgaccca  22564400             <---------------AGL15             <----------DOF2             --------------->AGL15            <-----------------AGL2            <---------ANAC58            <-----------------AGL3           <---------ANAC58            <---------ANAC46                 <---------ANAC58        <---------ANAC58                   <-----------HVH21 >HVH21 <---------ANAC58                ----------->RAV1(2)                             <---------ICU4 ---->LBD16 <---------ANAC58           --------->MYB52(1)                         <---------At4g35610 --->HSFB2a(2)                         -------->P                             <-----------HVH21 ----HSFB2a(2)                    --------->ZAT18                     <-----------GT1  <---------YAB1   gaacaaatgggcttgcttttaatgggctcacttatgtgaactacctgtcgttcaaactttcgaaaacttattaaacgactcgtcgtctgatcatttctga  22564500  Previous    Next  AGI:  At5g55670.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G13190.1); similar to Os08g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062111.1); similar to hypothetical protein OsI_030714 [Oryza sativa (indica cultivar-group)] (GB:EAZ09482.1); similar to Os09g0476100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063463.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 22561166    to: 22564027    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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