Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                             --------                                                                                             --------                                         <----------DOF2                                   --------->GLK1(2)                                      <---------ARR11(3)                                   --------->ARR11(3)                           <---------ZAT18                                                 <---------ARR11(3)                           --------->ZAT18     <-----------HVH21             <-----------GT1 --------                           <---------ZAT14    <---------bZIP60(1)    ----------->GT1       <---------                      <---------YAB1  --------->ARR11(3)         <---------AHL20(2)     <---------AHL20(2)                  --------->YAB1   <-----------GT1        --------->ZAT6  <----------DOF2 --------->RVE1(1)                ------->TEIL    --------->YAB1--------->bZIP60(1)--------->AHL20(2)    --------->YAB1   attcttcacatatatatgtatcatatgagtgcattaataacatctttgatgtcatgtataacactaaaaaaatgtgatttatcgacttataaaaatctta  22548200                                                           --------->ICU4                                                        --------->TGA2(2)                                                       <-----------TGA1                                                       <---------RAP2.6(3)                                                      --------->TGA2(1)                                                      <---------O2                                                      <---------TGA2(1)                                                      >>>>>>>>>>HY5                                                      <<<<<<<<<<HY5                                                      <---------ANAC55(2)                                                      --------->O2                <---------ANAC58                                                      --------->ANAC55(2)         <---------ANAC58                                                      --------->bZIP60(1)         <---------ANAC46                                                      <---------bZIP60(1)   --------->ATHB12                                                     ----------->STF1      <----------DOF2          -                                                     <-----------STF1     <---------ANAC58          <                                                     --------->RAP2.6(3)  <---------ANAC46       <--- ------->ARR11(3)                                   <---------TGA2(2)     <---------ANAC58   <------- ->TOE1(3)   --------->TOE2(3)                     ----------->TGA1      ---------->ID1      <------- ->TOE2(3)  --------->YAB1 <---------YAB1        <---------ICU4   <---------RVE1(1)          <------- ->YAB1    <---------YAB1 <---------GLK1(2)      --------->YAB1   <---------CCA1(1)          <------- --ARR10   <---------TOE2(3)                 --------->AHL20(2)  <---------ARR11(3)--------------->AtSPL8   acatattgacattaacataaaacatatagattattgtatgatatagattaaacatgacgtcatgctggatattttggcttattggcttgtacattacttg  22548300   <---------YAB1 <---------ICU4 -------->ICU4 ---------YAB1                   --------->CCA1(2) ------YAB1                     --------->ARR14(2) --ANAC46                       <---------ARR14(2) --ANAC58                       <---------GLK1(2)                <---------MYB52(2) --ANAC55(1)              <-----------GT1               <------ZmHOX2a(1) --ANAC58              <---------ICU4           --------->MYB52(1)     ----------->GT1     <-------TEIL   tgattatgagtgtataatataaaactaattactagatttgcacaaaaaaaaaacagaaggatagaaaactaactagaaaattaagacattacatacattc  22548400                                                  <---------ARR11(3)    --------->ANAC58                                                  --------->ARR11(3)    --------->ANAC58--------->YAB1                                                <---------TOE2(3)    <---------ATHB12  <------ZmHOX2a(2)                                                ----------->ARR10  ===========================HOX2a_HOX2a                  <---------AHL20(2)    <---------YAB1  <---------TOE2(3)             --------->ARR11(3)                  --------->AHL20(2)   --------->AHL20(2)          ------>ZmHOX2a(1)  <---------ARR11(3)   ttctatatgaaaaaaaacatttaaaaaacaaaacaaaacatttttatactaagatactaatgaaaaatcctatcaagaaaatgaagaagatcataaaaac  22548500                                                        --------->AHL20(1)                                                        <---------AHL20(2)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                                  --------->YAB1                     --------->AHL20(2)           <---------AHL20(2)                     <---------AHL20(1)           --------->AHL20(2)                               --                     <---------AHL20(2)       <---------YAB1                                      <--                    --------->AHL20(2)       --------->ARR11(3)                               <------        <---------ARR14(2)                   <---------ARR11(3)        <------------CBF       -------        --------->ARR14(2)            ---------->DOF2   --------->AHL20(2)     <---------ZAT2--------   --------->MYB52(1)--------->AHL20(1)    ----------->GT1  --------->AHL20(2)--------->MYB52(1)-----   aaaattatcggatttgaagagaataaattttgaccaaaaaaaaagaagataattaaaataaaataaaaacaagaattggccaactgtgagaacatcatca  22548600                  <---------ETT(1)                 ------>ZmHOX2a(2)                --------->CCA1(2)                <------ZmHOX2a(2)               <---------ARR14(2)                        <---------TOE1(2)               <---------ARR11(3)                       --------->LBD16       <------------CBF   *TSS                          ------>ZmHOX2a(1)    ------------>CBF    <---------ALFIN1               <---------LBD16 ------->YAB1  --------->AGP1                 =================HOX2a_HOX2a                <---------ANAC58 -------ATHB12 --------->ARR14(2)           <---------ARR11(3)                            <---------ANAC58 ---YAB1      <---------GLK1(1)             --------->ARR11(3)                     ------>ZmHOX2a(1) ----->CBF <---------ANAC58         <---------YAB1 <----------DOF2                 <-----------HVH21 ->TOE2(3) <---------ANAC58   <----------DOF2 ------>ZmHOX2a(2)                 ------>ZmHOX2a(1)<--- ---->WOX13(1)--------->GLK1(1)  <----------DOF2<-----------GT1           <<<<<<<<<TBF1   <---------ANAC46   atgaagaccaattgcgagatccgacaacaccgcttcttttgatttcgatcttactttcctgggtatgtctcaattcttcttcctccttcagttcgtgttc  22548700                                                                                       ----------->HVH21                                                                             ------->TEIL        --------->ATHB12                              <----------DOF2       <---------CCA1(2)      <---------WOX13(1)         <---------YAB1      <---------ICU4    <---------ARR11(3)    --------->ATHB12          <----------DOF2 --------->ARR11(3)       --------->GLK1(2)   <---------YAB1            <---------ICU4   <---------ARR11(3)       <---------ARR14(2)           < ------ANAC46      --------->ANAC46       ---------->DOF2              --------->ARR14(2)      ------   tgtgtctgattgattactctcacaaaactcatcttttcattgtctaaaggtctaatctttagctataactcaaaatctgtatctaagttctgacaagttt  22548800               <---------AHL20(2)               --------->AHL20(1)   --------->ANAC58                                                            --------->TOE2(3)<----   <---------ANAC55(2)                                                   --------->ANAC55(2)   >>>>>>   --------->ANAC58                                                      <---------ANAC58    <-------   --------->ANAC55(2)         <-------TEIL                              <---------ANAC58  --------->CCA1(2) ---------MYB52(1)     <-------TEIL            <------ZmHOX2a(1)   <---------MYB46(3)--------->TOE1(2) --->GLK1(2)   --------->AHL20(2)           <-----------RAV1(2)   <---------AtMYB61 --------->YAB1   ctgttacgaaattcaaattttttgatacatatgttcatttctcagaacaggagatgtcaattttggcgatggttttcgtaacataaacatgagatttgat  22548900           ------>ZmHOX2a(2)          <------ZmHOX2a(2)          --------->GLK1(1)         <---------AGP1         <---------ARR11(3)                                   --------->ANAC58         --------->ARR14(2)                                   --------->ANAC46         <---------ARR14(2)                                   --------->ANAC58         --------->ARR11(3)                                <---------SPL7         <---------ARR14(3)                              <---------------AtSPL3     <---------ZAT14                                   --------->At4g35610     --------->ZAT14                                   --------->ZAT2     <---------ZAT18                                   <---------ZAT2  <---------ANAC46                                 <---------REM1(1)        ------>MYB46(1) -----WOX13(1)                              <---------ANAC46 --------->SPL7 ------>MYB83 >>>ARR2<---------At4g35610        --------->HSFB2a(2) <---------At4g35610--------->MYB46(3) --YAB1 <---------CCA1(2)          <---------HSFB2a(2)------->TEIL     <-----------GT1   tgttctgtgcagatctcatagttaatctggtttgagtctagaaatgtcgagtgatgcagctcgtacgccattgttacccactgagaagatagataccatg  22549000                                                                                                  <--                                                                 --------->ALFIN1              <-----                                                           --------->HSFB2a(2)               <-------            --------->TOE2(3)<---------------AGL15         <---------HSFC1(1)                --------            --------->TOE1(3)--------------->AGL15         <---------HSFB2a(2)      <---------------AtSPL8           ----------->RAV1(2)<<<<<<<<<TBF1        <---------ANAC46           <---------MYB46(3)  ---    --------->ARR11(3) --------->ARR11(3)          <---------ANAC58          <---------YAB1 ---------    <---------ARR11(3) <---------ARR11(3)          <---------ANAC58    ------>ZmHOX2a(1)    <--------   gctcaagatttcaacctgaactcaagaacttcttcttcaagaaaacgaagattgcgtcgctctagaagtgctcctcgtggtgattgtatgtacaatgatg  22549100  Previous    Next  AGI:  At5g55620.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39940.1) Range:  from: 22547428    to: 22548165    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g55630.1    Description:  KCO1 (TWO PORE K CHANNEL); calcium-activated potassium channel/ outward rectifier potassium channel. Identical to Calcium-activated outward-rectifying potassium channel 1 (KCO1) [Arabidopsis Thaliana] (GB:Q8LBL1;GB:O04718;GB:Q9FM75); similar to KCO5 (Ca2+ activated outward rectifying K+ channel 5), outward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G01840.1); similar to Eucalyptus camaldulensis outward-rectifying potassium channel mRNA, complete cds (GB:AAF97727.1); contains InterPro domain Potassium channel, two pore-domain; (InterPro:IPR003280); contains InterPro domain Ion transport 2 (InterPro:IPR013099) Range:  from: 22548626    to: 22550344    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version