Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------LBD16            --------->WRKY38(1)     <-------TEIL--------->ZAT18    --------->CCA1(2)    --------->ARR14(1)                                                                              <   --------->ARR14(2)                        --------->ANAC58         --------->At4g35610           <   <---------ARR14(2)               ----------->TGA1                  <---------At4g35610           <   <---------ARR11(3)             <---------ICU4                      <---------ZAT2            -----   --------->ARR11(1)      --------->At4g35610                        --------->ZAT2        --------- ----------->ARR10  --------->At5g28300      --------->ANAC58     <-----------GT1           <-------- --->MYB46(3)    <---------ZAT14  --------->YAB1        --------->At4g35610                <---------GLK1(2) ---ALFIN1<----------DOF2  <---------At4g35610          <---------At4g35610           <-----------GT1   accaagatacgactttgactgcggtaatcagcttaagcatgacgaagacgaaatgggcatctcaaaattttcagcttagaatagatttataccgattcct  22542600                                            <---------ZAT18    <---------------AtSPL8    <------ZmHOX2a(1) ---------TOE2(3)            --------->LBD16--------->ZAT18          <---------ANAC46 ---------TOE1(2)          <-----------RAV1(2)  <----------DOF2     <------NtERF2 ---------TOE1(3)      --------->ATHB12     <---------ZAT14        <---------RAP2.3(1) ->ZmHOX2a(1)          -------->HAHB4       --------->ZAT14     --------->MYB52(1)              <---- >ARR14(2)            <---------ATHB12  --------->DAG2 <---------HSFC1(2)                      <----- -ARR14(2)    --------->MYB46(3)       ---------->DOF2 --------->HSFC1(2) <----------ID1 <------ZmHOX2a(2)   ctaaggtttgtacagaacaaacaaatgattcaggagaaaaaaaaagtgaactttagaagcttagaatagcggcgagaagacaaaatcgacgatcgatttc  22542700                                 <---------TOE1(3)                                 <---------TOE2(3)                           --------------->AGL15                           <---------YAB1                                  ------>ZmHOX2a(2)                           <---------------AGL15                         --------->ARR11(3)                          <-----------------AGL1       --------->ARR11(3)<---------ARR11(3) -----ANAC46 >>>>>>>>>TBF1<-----------------AG       --------->MYB59 --------->YAB1 ----LBD16>>>>>>>>>TBF1   <-----------------AGL2     <---------TOE2(3) <---------YAB1   ggagatggagaagaagaagaaaatgagttctgattaaggtaaacttggagaaaataaggtattcccatggatgatgatctctcttctctctctctctctc  22542800                                  <---------AtMYB61                             --------->ANAC58                           <---------ZAT2                                       --------->ANAC46                           --------->ZAT2                              *TSS<---------ICU4           <              --------->ALFIN1  <----------DOF2                       <---------ZAT18----------->TGA1        <-----------RAV1(2)--------->At4g35610                 --------->ARR11(3)    ----------->HVH21    <-----------HVH21      <---------At4g35610------------------------>ANAC81   --------->ANAC58 <--- ---------->DOF2     ---------->DOF2 <---------REM1(1)      >>>>>>>>>TBF1 --------->ICU4       ------   tctcaaagtcacaggggtttggcaaaagcagctgctttggtgaaggaagaagagagagagaagaagaaattgtgcaattactacgaaatgacgagaatat  22542900                                                                                       <<<<<<<<<GATA-2                                                                                       <---------GLK1(1)                                                                            ----------->GT1      <---                                                                           --------->DAG2      <-----                                                                          ---------->DOF2      ======                                                                        ------->GAMYB  <<<<<<<<<GATA-1                                                                     <---------DOF5.7(2)------>ZmHOX2a(2)      <------------CBF                              ------>NtERF2   <---------WRKY38(1)<------ZmHOX2a(2)     --------->ATHB12                             --------->ATERF1(1)--------->MYB52(1)<<<<<<<<<GATA-4    --------->ARR11(3)                           <---------ATERF1(1)<---------WRKY12   <<<<<<<<<GATA-3 ------ZmHOX2a(1)          <---------AHL20(2)  --------->ALFIN1     <---------WRKY45  --------->ARR11(3) ------LBD16<-----------------AGL3         <---------At5g28300  --------->DAG2        <---------ARR11(3) --->ARR11(3)            <----------DOF2 ----------->HVH21     ---------->DOF2        <---------AGP1   caggaagttattgggccttatatgggtctttaatgggccttaaatgaccgtggccgactaaaaaaaaaagtcaacgaaaagtcaaatagatctctgtctt  22543000                                                              <----------DOF2                                                              <---------DAG2                                                             <---------ANAC58                                                             <---------ANAC58        <---------YAB1                                                        <---------ICU4               <---------AHL20(2)                                                        --------->ATHB12        --------->AHL20(1)                                                        -------->ATHB1          <---------AHL20(1)                                                        --------->YAB1       --------->AHL20(2)                                                       <---------YAB1        --------->YAB1                  <---------CCA1(2)                   --------->GLK1(2)    --------->AHL20(2)  <---------AHL20(2)                                 --------->YAB1  --------->HSFB2a(2) ------AHL20(2) --------->O2                       <---------TOE2(3) <---------HSFB2a(2) -----DOF2      --------->TGA1a  *TSS          --------->TOE1(3)   --------->HSFB2a(2)         <----- =========================bZIP_DOF             --------->TOE2(3)   <---------HSFB2a(2)  <---------WOX13(1)   ttatttttttgttctctctcgtctctctggctaccgagaaaacagagaacgttaagaatcattgcttttctcgagaaaataatatttttaattgaatcga  22543100                                                      --------->ANAC58                         ------                                                      --------->ANAC46 <---------ICU4          <-----                                           --------->CCA1(2)           --------->ATHB12    <------MYB46(1)                                        <---------TOE2(3)         <---------WOX13(1)       <------MYB83                                --------->TOE1(3)     <---------ANAC55(2)          <---------ATHB12       ---------->DOF2          --------->TOE2(3)     --------->ANAC58<---------YAB1   --------->ZAT2 ----HSFB2a(2)               <-----------GT1      --------->CCA1(2)   --------->ICU4   <---------ZAT2   gaaactcttcaaagttgaattaagaagaatattacctcaattgagatttgagagacacgcatagagagattgattattgcatcgaatcaagcttggtttg  22543200                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           --------->ATERF1(1)                                                                                           --------->ORA47(2)                                                                                           --------->RAP2.6(1)                                                                                           --------->ERF1                                                                                           --------->DEAR4(2)                                                                                           --------->RAP2.3(1)                                                                                           --------->RRTF1(1)                                                                                          --------->At4g35610                                                                                          --------->ABI4(1)                                                                                          <---------At4g35610                                                                                          --------->LBD16                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                         --------->ANAC46                                                                                         --------->DEAR3(1)                                                                                       <---------ATERF1(1)                                                                                       ------>NtERF2         <------NtERF2                  <---------GLK1(1)                             --------->DEAR3(1)        --------->LBD16       ------>ZmHOX2a(2)                                       <---------ALFIN1       <---------ANAC58      <------ZmHOX2a(2)                       --------->At4g35610 <---------ALFIN1       <---------ANAC58     --------->ARR14(2)                       <---------At4g35610--------->ATERF1(1)       <---------ANAC46     <---------ARR11(3)                    <---------ATHB12   --------->ATERF1(1)      <---------LBD16       --------->AGP1                       --------->ANAC46   <---------ATERF1(1)  <---------ICU4            <---------AGP1 --------->TOE2(3)   <---------ALFIN1     ------>NtERF2 --->MYB52(2)               --------->ARR11(3)         --------->ZAT14              --------->LBD16 ----MYB46(3)    <----------DOF2        --------->GLK1(1)     --------->ZAT14     <---------LBD16 <--   ttagtaatggcgggaatagctttagttttagatctactgaagaaatctcaatctaagaacactctccactcatcttccttctattccgcctccgccgccg  22543300         --------->RAP2.3(1)         --------->ATERF1(1)        <---------At4g35610        <---------ATERF1(1)     ----------->RAV1(2)     <---------ZAT2     --------->ZAT2     <---------At4g35610     --------->At4g35610    <-----------RAV1(1) ->NtERF2--------->ORA47(2) ---->At4g35610 -----At4g35610 --->RAP2.3(2) --->DEAR3(1) -->DEAR4(2) -->RAP2.3(1) -->ATERF1(1) --ATERF1(1) --RAP2.3(1) ->ABI4(1)--------->DEAR3(1) >RAP2.3(3) >ANAC46------>NtERF2 -ALFIN1--------->At4g35610<---------ANAC58 >RRTF1(2)<---------ATERF1(2) >RRTF1(3)--------->ATERF1(2) >RAP2.6(2)           <----------DOF2 >DEAR3(1)--------->RAP2.3(2) >RAP2.3(2)      --------->At4g35610                                    <---------ARR14(2) -ATERF1(2) <------NtERF2  <---------ANAC46    <--------P               --------->ARR14(2) >ATERF1(2)------>NtERF2   <---------ANAC58   <---------MYB52(1)   <---------ANAC46                <- -DEAR3(1)--------->RAP2.6(2)              <---------ANAC46      --------->ZAT14                   -- --------DOF2    <---------At4g35610      <---------LBD16        <---------ZAT14          <----------DOF2   ctgtttctgctgccgcctctgctccttttgcgtctaggtttctcttcgggtatgtattctctctctctgtagtggatttggatttgttttgactttcact  22543400                --------->ATHB12         >>>>>>>>>GATA-3         >>>>>>>>>GATA-1         >>>>>>>>>GATA-4         >>>>>>>>>GATA-2      <---------ANAC46   --------->ALFIN1             <---------TOE1(2)        <---------TOE1(3) ------>ZmHOX2a(2)       --------->ATHB12          <---------YAB1 --------ARR14(2)       --------->ICU4 <---------YAB1    <---------TOE2(3) ------->ARR14(2)      <---------WOX13(1)         <-----------------AGL2                          ---   ggatcgtggtggattgagttattggattgattactaggtttctgattttgtttctgattagggtttagaaattcagaattgatcatcttctattgctcaa  22543500  Previous    Next  AGI:  At5g55600.1    Description:  agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein. similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G68580.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45102.1); contains InterPro domain Tudor-like, plant (InterPro:IPR014002); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) Range:  from: 22539075    to: 22542871    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g55610.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK94457.1) Range:  from: 22543033    to: 22545336    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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