Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ----------->RAV1(2)                                                <---------ALFIN1                                               --------->ANAC46                                               --------->ANAC58                                               ----------->HVH21                                               --------->ANAC58                                          <-------MYC2                                          ------->MYC2                                          ------->MYC3                                          <-------MYC3                                          <-------PIF4                                          ------->PIF4                                          <-------PIF5                                          ------->MYC4                                          <-------MYC4                                          ------->PIF5                                         <---------ANAC46                                         <---------TGA1a                                         --------->TGA1a                                         --------->O2                                         <---------O2                                       <------------OsbHLH66   ------>ZmHOX2a(2)                                     <-----------------PIF3(1)<------ZmHOX2a(2)                                    XXXXXXXXXXXXXXXXXXXXX>MIR167D    --------->ICU4                                    --------->ANAC46 <-----------HVH21<---------ICU4                                    --------->ANAC58--------->ALFIN1 <---------YAB1                                <-----------------------TaNAC69(2) --------->YAB1                            ---------->DOF2 --------->ZAT18  <---------ARR11(3)                            =======================bZIP_DOF  --------->ARR11(3)  --------->REM1(1)                   ================================bZIP_DOF--------->ANAC58  --------->ZAT2 <--------                   ---------->DOF2  --------->ANAC58<-----------RAV1(1)      <---------At4g35610        <-----------RAV1(2)<---------ATHB12 <-------TEIL   --------->ANAC58  --------->At4g35610   tctctgagacacaggggtctgcaaagacaatgaagccgaagccacgtgcacgacctgtggcacgatctctcatgatcacagcttcaacaacatcaccata  22520800                                                                       ------>ZmHOX2a(2)                                                                      --------->ARR14(1)                                                                      <------ZmHOX2a(2)                                                                      --------->CCA1(2)                                                                     --------->ARR14(2)                                          --------->GLK1(1)          <---------ARR11(3)                                          <---------GLK1(1)      --------->LBD16                                       --------->ANAC58          <---------LBD16                                       --------->ANAC46    --------->At4g35610                                       --------->ANAC58   <-----------ARR10                                      --------->LBD16     --------->ARR11(3)                                    --------->TOE1(2)     <---------ARR11(3)      <----------DOF2    --------->DAG2               --------->ARR14(2)  <---------ATHB12<---------ARR14(2)       <------   ---------->DOF2               ------->TEIL     --------->AtMYB61  --------->AGP1           ------- -YAB1          <-----------GT1 <---------CCA1(2)--------->MYB46(3)----------->ARR10      <----------   gttgctaaagtagtctcttaacctttcttcgtctgtatcccacgaaatcccaccaatgaagagcttccccagatccgattccatcttttttttttctgct  22520900 ---At4g35610                         --------->At4g35610 ---------->DOF2          <---------ANAC58 -->At4g35610          --------->AHL20(2)     ----------->GT1                      <---------ANAC58 -GT1    --------->GLK1(1)          <------ZmHOX2a(1)   --------->YAB1         <----------DOF2   ----   ccaattcagagaaacccaaaaaaaaaaaaatcgagtaaggagatgaaattgaaaaaaatcaaaagacttagaaacaacatacttttcttgtctgaaaatc  22521000                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                  --------->GLK1(2)                                               <---------ANAC58          --------->At4g35610                  ----------------->AGL1------------------------>ANAC81  --------->ANAC58                             <---------ANAC58    <---------ARR14(2)  --------->ANAC58    <---------MYB46(3)--------->YAB1             --------->ARR14(2)  --------->ANAC46--------->DAG2       <---------ATHB12      --------->YAB1           ---------->DOF2 ------>DOF2     ---------->DOF2    ------>ZmHOX2a(1)       <---------YAB1  <----------ID1   aaagacggaatcagataaataaagttgttgttgttgtcctaatcaaattgcgaatttgggttatcatcaaatctgaaaaaaacaaaaaaaaagcatcatc  22521100                                     --------->AHL20(2)                                     <---------AHL20(2)             --------->At4g35610                                    --------->AHL20(2)              <---------At4g35610                                   <---------YAB1                 <-----------RAV1(2)                                 <---------ICU4                  ----------------->AGL1                                 <--------HAHB4                  ----------------->AGL2                                 --------->ATHB51            ----------->HVH21                                --------->ICU4   <---------------AGL15                                <---------YAB1   --------------->AGL15             ----------->GT1                       <---------ANAC55(2)      ----------------->AGL3      <---------GLK1(1)  ------                    --------->ARR14(2)     --------->DAG2  --------->At4g35610   ----------->GT1                    <---------ARR14(2)    ---------->DOF2  <---------At4g35610  --------->ALFIN1                  --------->LBD16-------->ATHB1 <-----------------AGL3    <------ZmHOX2a(1) <--------   aaatcacaaaaccaaaaacccagaaacgtgaagaattattaaaaaaaagcaccatttttggagatgacccagatgaggaaatgtggagaaaaatatgaaa  22521200                                      --------->ARR11(3)                                      <---------ARR11(3)            <---------DAG2                                     *TSS                    --------->AHL20(2)                               --------->YAB1               <---------YAB1     <---------TOE2(3) ---->DOF2                    <---------YAB1            <----------DOF2   <----------DOF2 -YAB1     <------ZmHOX2a(1)------>ZmHOX2a(1)     ---------->DOF2<-----------GT1            <--------   agagagaaacagaggatgtttttgttcatcctataataaacatcttctctctcaaaggctttattaaaaacctttccttttaatgttttttttatctgta  22521300                                                                                             --------                                                                                             --------                                                                                             --------                                                                                          --------->YAB1                                         ----------->GT1                               --------->YAB1                                    <---------AHL20(2)                                 <---------ICU4                                    --------->AHL20(2)                                <---------YAB1                                 <---------ICU4                                       --------->ICU4                                <---------YAB1                                      <---------ICU4                                --------->ICU4                                      --------->YAB1                       <----------DOF2   <----------ID1                            --------->ICU4             ---------->DOF2  --------->YAB1                                       <---------YAB1           <---------YAB1  <----------DOF2     ---------->DOF2                   --------->YAB1           <---------TOE2(3)<---------------------WRI1                          <---------AHL20(2) -- ---------AGL3      --------->GLK1(2)  ---------->DOF2                         --------->AHL20(2)  <-   aatggtttccattaagaaagagtttctttctttgataattaaaaagaaaaaaagagacagagaacaatagttagtctcacatataataataataatctta  22521400      <---------AHL20(2)      <---------YAB1     --------->AHL20(1)     --------->AHL20(2)                                                                  <---------YAB1     <---------AHL20(1)                                                               <---------AHL20(2)     <---------AHL20(2)                                                               <---------YAB1  --------->YAB1                  <----------DOF2                                     --------->AHL20(2)  --------->AHL20(2)             <---------ANAC58                                    <---------AHL20(1)  <---------AHL20(2)             <---------ANAC58                                    --------->AHL20(2) ->TOE2(3)        --------->AHL20(1)                                                 --------->AHL20(1) ->YAB1     ----------->GT1 --------->CCA1(2)                                       --------->YAB1 ->TOE1(3) <----------ID1<---------TOE2(3)                                       <---------AHL20(2) < ------->YAB1     <---------ARR11(3)                              <--------P    --------->AHL20(2)  < --------ICU4     <---------AHL20(1)  <----------DOF2 <----------DOF2       <---------TOE2(3)   <----   ataataatataatggggcaaaatatttgagatttggctttcttttggtttaagcatcttttttttttggtagatagttgagattaaatataatttttgat  22521500                          <---------YAB1               --------->AHL20(2)                         --------->ARR11(3)            <---------AHL20(2)                         <---------ARR11(3)       <---------ATHB12                        --------->YAB1            <---------YAB1 <---------MYB59                       <---------YAB1      <-----------GT1       --------->TOE2(3) ---------TOE2(3)      --------->ICU4      --------->ARR11(3)   <---------ANAC55(2) ---------TOE1(3)    --------->YAB1        <---------ARR11(3) <-----------GT1 ------DOF2         <---------YAB1      --------->YAB1--------->AHL20(2)      --------->AHL20(2)  <--   ttaaggctagactattactactatcatgatcatggagacccataatatccctatcatttatttgttacctaaattttcaaataaacaatagaaaactttt  22521600            <---------AHL20(1)            --------->AHL20(2)                                    <-----------GT1            <---------AHL20(2)                                 <---------ICU4       <---------AHL20(2)                                     --------->ICU4                <--------       --------->AHL20(2)                                <---------ANAC58                  <---------ARR11(3)       <---------AHL20(1)   <----------DOF2              <---------ANAC46                  --------->AHL20(1) ---------GT1    <---------AHL20(2)                      <---------ANAC58                  <---------AHL20(1)   aaactatattttattttattttataaaacactttgcaatttgcaattttgtttaaaatggtgtgatttttactcttggacgaactctttccaatattttt  22521700  Previous    Next  AGI:  At5g55550.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G26650.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G26650.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO38854.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 22518761    to: 22521237    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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