Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------At4g35610          <---------ANAC58          <---------ANAC58      ---------->DOF2    --------->LBD16 ---------ARR14(2) -------->ARR14(2) --------RAP2.6(3) ---->NtERF2 <-----------ARR10 ------>DEAR3(1) -------->HVH21         ------->TEIL ----->DEAR3(2)         --------->ARR14(2)                                                    <------ ---->At4g35610        <---------CCA1(2)                                        --------->GLK1(2) -----At4g35610    ------>ZmHOX2a(1)                                           <---------GLK1(2) ---GLK1(1)  ----------->ARR10                         <----------DOF2  <----------DOF2   <---------ZAT2   ccgacccgagaagcgtagctcctctgtatccaatactcgactctaagaacataacctctttcaaaaacctgtttcttttcagaatctctgagagctcgtt  22517400                                        <---------DAG2                                   <---------ZAT2                                   --------->ZAT2                                   --------->At4g35610                                   <---------At4g35610                                --------->ZAT2                                  --------->ANAC58                          <---------ARR11(3)                                  --------->ANAC58                         <---------ZAT2                              --------->ANAC58                     ------->GAMYB  ----------->RAV1(1)              ------->TEIL    --------->ANAC58       --------->ALFIN1      --------->ZAT2          ==          --------->ANAC46  ---------->DOF2<---------ARR11(3)     --------->MYB46(3)  --------->At4g35610       --------->ZAT18    --------->HSFB2a(2)    --------->HSFB2a(2)      --------->ANAC58         --       <---------ZAT14    <---------HSFB2a(2)    <---------HSFB2a(2)      --------->ANAC58  <-------- -GAMYB--------->ZAT14<----------DOF2   <----------DOF2           <---------MYB52(2)--------->MYB46(3)   gagacattgttcactgaacctgttctttctgaaagcaagctgctttatcttcgaggtgttgtctaacaacaaacccaagctctgcaacagctcgatttcc  22517500                                                                                 <---------ZAT14                                                                      <------ZmHOX2a(2)                                                                      --------->CCA1(2)                                                                     --------->ARR14(2)                                                                     --------->ARR14(3)                                                                     <---------ARR14(3)                                                                     --------->GLK1(2)                                                                     --------->ARR11(3)                                      <---------ANAC58               <---------ARR11(3)                                      <---------ANAC58    <---------STY1(2)      --------->ZAT14                                   <---------DEAR3(1)     --------->ZAT2     --------->DAG2                                <---------TGA1a           --------->STY1(2) =================bZIP_DOF                                <---------O2              <---------ZAT2    ---------->DOF2                                --------->TGA1a        <---------ANAC58  --------->LBD16                                --------->O2     --------->ARR11(3)  <---------ARR14(2)       --------->TOE1(2) ------>ZmHOX2a(1)      =============================HOX2a_HOX2a    --------->GLK1(2)    --------->LBD16        <------ZmHOX2a(1)    --------->AGP1<---------ANAC46   <---------GLK1(2)    --------->TOE1(2)       ==============================HOX2a_HOX2a =========================================bZIP_DOF     <---------ANAC58------>ZmHOX2a(2)            - -------->DOF2       --------->ARR14(2)       <---------TOE2(3)      <---------AGP1<---------TGA1a  - -GLK1(1)            <---------ARR14(2)       <---------TOE1(3)    ----------->ARR10   <---------TOE2(3)   caaaagattccttcgaattccaagttcctgagagacgtctgcgtctctaaggatgttgctagctcgatgaagatctgggaaagtgaagtgaggttgtctc  22517600                                                       --------->LBD16                                                      --------->HSFB2a(2)                                                      <---------HSFB2a(2)                                                   <---------ARR14(2)                                   ----------->HVH21 ----------------->AGL1                                 --------->At4g35610 <---------LBD16             <---------AtLEC2    --------->ZAT2    --------->ARR14(2)            <-------TEIL         <---------At4g35610 <-----------------AGL1   <---------bZIP60(2)     <---------MYB52(1)--------->ALFIN1                                       <   <---------ANAC46--------->At4g35610     <---------ANAC58                                     <---- ---------->TGA1   <---------At4g35610     <---------ANAC46           --------->CCA1(2)        <----- ---------->HVH21  <---------GLK1(1)       <---------ANAC58   <------ZmHOX2a(1) <---------YAB1 ------   tagtgacgttgatgttcatggagctctctgttattagctgacaatgcgtggtgtttccggaagaggagaaagatagggtttgaagattgaagaaagtttg  22517700                                                                                                   <-                                                                                                   --              <---------ANAC58                                                                     <-           <---------WOX13(1)                                                                   <----        <---------YAB1                                                                          <----      <----------DOF2                         <---------AtMYB61                           --------->DAG2 ---------ANAC46                            <----------DOF2                              ---------->DOF2 ---GAMYB--------->ATHB12           <----------DOF2                                   ----------->GT1 ----MYB46(3) <---------ANAC46   <---------ARR11(3)                <----------DOF2   --------->DAG2-- --->MYB52(2) <---------ANAC58   --------->ARR11(3)      ----------->HVH21         ---------->DOF2<--   ttgtgggtctttgattgcttgaagaaaccatgagaggtctttgaagctttggtctggctctgactccatctttagacagagagaagaaaggtaaagttga  22517800                                                          <---------ARR11(3)            --------->ATHB12                              --------->ARR14(2)          <----------DOF2                                 --------->ARR11(3)      ---------->ID1                                      <---------ARR14(2) --------ARR11(3)            <---------AHL20(1)     --------->GLK1(2)                    <----------DOF2 ------->ARR14(2)            --------->AHL20(2)  ------------>CBF                   <---------WOX13(1) --------ARR14(2)       <---------AHL20(2) <---------AHL20(2)                      <---------ANAC46 -----TOE2(3)     <---------ANAC46        --------->AHL20(2)                       <---------ANAC58 -----TOE1(3)<------------CBF<---------AHL20(2) --------->ANAC46                   <---------ANAC58 ------->ARR11(3) <---------ANAC58        <---------AHL20(2)           ----------->GT1  <---------ANAC46 ----ZmHOX2a(1)   <---------ANAC58        --------->AHL20(1)<------------CBF <---------TOE2(3)     <-   ggatttttgtttctttattggtgtgttttattttattttgaaaatttaatacacaatctggatattgatgagttggataaatgttgagtgacttttattt  22517900                                <------------CBF                               <---------ICU4                               --------->ATHB12                               -------->ATHB1                               --------->ATHB51    <---------YAB1                              --------->ICU4       --------->AHL20(2)                              --------->AHL20(2)   <---------AHL20(2)                              <---------AHL20(2)  --------->TOE2(3)     --------->GLK1(2)                    <------------CBF            --------->ICU4      --------->YAB1         >>>>>>>>>>>>>>>>>LFY <---------ATHB51--------->YAB1       <---------YAB1 <---------ANAC58   <---------ICU4           <---------ATHB12    --------->YAB1                  ---- <---------ANAC58  --------->ICU4            --------->AHL20(2) <---------YAB1          <----------DOF2 ----------GT1 --------->At5g28300       <---------YAB1   <------------CBF           <---------ARR11(3)   tttacttgttgagccactgtaatattgactaaattattgttttatcaataaatattaatacattgtattataagaatttgacaagtagttctttttgtaa  22518000               --------->ANAC55(2)               <---------ANAC55(2)             <-----------GT1         --------->AHL20(2)         <---------AHL20(1)         --------->AHL20(1)         <---------AHL20(2)       <---------YAB1      <---------ICU4            --------->YAB1                                       --------->YAB1     <---------YAB1            --------->ICU4                         <---------CCA1(1)            <-     --------->ICU4     --------->AHL20(2)      ---------->DOF2       <---------RVE1(1)            --   --------->YAB1    --------->WOX13(1)  --------->AHL20(2)          --------->ARR11(3)          ----  <---------YAB1   ------------>CBF  ------->TEIL       --------->AHL20(2)<---------AHL20(2)    <---- ----->ICU4  --------->AHL20(2)<---------YAB1--------->AHL20(2)      <---------ARR11(3)         -----   tgttttgataattaattacatatcaattacattatgatgaaacttaaataaaaagttttaaaatagctagagatatttttttgtcaaaaatagctagaga  22518100                               ----------->GT1                             ---------->DOF2                       <------MYB46(1)                          --------->YAB1                           <------MYB83                          --------->AHL20(2)        <---------HSFB2a(2)                         <---------YAB1             --------->HSFB2a(2)     <---------ANAC55(2) --------->ICU4  --------->GLK1(2)        --------->MYB59 --------AHL20(2)      <--------HAHB4 <---------AHL20(2)     <---------YAB1 ------->AHL20(2)      <---------ICU4--------->AHL20(1)     <---------AHL20(2) ----->CCA1(2)        <---------YAB1 --------->AHL20(2)     <---------AHL20(1)            --------->ANAC46 -----ARR11(3)        --------->ICU4 <---------AHL20(1)     --------->AHL20(2)  <---------ANAC46  <-- ---->ARR11(3)      --------->YAB1   <---------AHL20(2)    --------->YAB1     <---------ANAC46    ---   tataaatatgtaagttgttttgtcataattataaagaaataaaattctatatttctggacattataatttggtatagatagtgtgtgtatataagaaaca  22518200                                --------->ATHB12                                -------->ATHB1                                --------->ATHB51                               --------->AHL20(1)                               <---------ATHB51              --------->TOE2(3)                               <---------AHL20(2)           ----------->GT1                               <---------YAB1               --------->YAB1               --------->YAB1  --------->ICU4              <---------TOE2(3)              <---------YAB1 <---------ICU4          <---------YAB1          <---------DAG2    --------->ICU4          <---------AHL20(2)          <----------DOF2 --------->YAB1            --------->AHL20(2) -------ARR14(2)         --------->AHL20(2)        --------->AHL20(2)   ----------->GT1    --------->GLK1(2) ------>ARR14(2)     --------->MYB46(3)     ----------->GT1<---------YAB1           ----------->GT1   aatccacaagtgctttatcatcaacaaataaaaattattgaccatgaagaaaattaaaattatcgtaaatttgttagtaaaatttctcgtaaaattctgc  22518300  Previous    Next  AGI:  At5g55540.1    Description:  TRN1 (TORNADO 1). similar to EMB2004 (EMBRYO DEFECTIVE 2004), protein binding [Arabidopsis thaliana] (TAIR:AT1G10510.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87265.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38855.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75217.1); contains domain SSF52540 (SSF52540); contains domain SSF52047 (SSF52047); contains domain PTHR13824:SF1 (PTHR13824:SF1); contains domain PTHR13824 (PTHR13824); contains domain G3DSA:3.80.10.10 (G3DSA:3.80.10.10) Range:  from: 22513422    to: 22517769    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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