Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ARR11(3)                          --------->ANAC58                          --------->ANAC58                     --------->ANAC58                     --------->ANAC58                 ------>MYB83                 ------>MYB46(1)                                                        --------->HSFB2a(2)               <---------------AGL15                                            --------->AHL20(2)               --------->MYB46(3)                                               <---------AHL20(2)               <---------MYB59                                                --------->ANAC55(2)              ----------------->AGL1                                          <---------ANAC55(2)              <-----------------AG                                         --------->ARR11(3)              --------->ANAC58         --------->YAB1                      <---------ARR11(3) ------>ANAC58--------->ANAC58       --------->ANAC58                      <---------GLK1(2)     ---- ------>ANAC58<-----------------AGL1 --------->ANAC46                    ----------->ARR10      <---- ------>ANAC46--------->ANAC46       --------->ANAC58                  ---------->DOF2  <---------HSFB2a(2) ---->GAMYB<---------SPL7 ----------->GT1                         ---------->DOF2    --------->ARR11(3)   acgcctcagtggccatacccaacaaggcaagttattcacaagcaaaactgttgatcaacaaaaatcaaaaaaggaaagatacttaattatctagaattgc  22451900                                                                     <---------ARR11(3)                                                          --------->CCA1(2)                           <----------DOF2                --------->GLK1(1)                           --------->TOE2(3)   XXXXXXXXXXXXXXXXXXXX>MIR420               <---------AHL20(2)   <---------AHL20(2)   <---------ARR14(2)               <---------ICU4       --------->AHL20(2)   --------->ARR11(3)              --------->AHL20(2)    <---------AHL20(1)   --------->ARR11(1)           <---------AHL20(2)      --------->AHL20(2)    --------->ARR14(2)      XXXXXXXXXXXXXXXXXXXX           --------->AHL20(2)    --------->TOE2(3)     ----------->ARR10         XXXXXXXXXXXXXXXXXXXX ------->RAV1(1)     <-------TEIL--------->TOE1(3)------>MYB46(1)  --------->ANAC58                -- ------ID1--------->AHL20(2)   <---------TOE2(3)  ------>MYB83     --------->ANAC58 ----------->HVH21   aacaaaactaaaattaataaatatacatactttaacattaaatttgcaaaccaaacacagatatgcatcaagacatttcaattggtctgaagggaacttc  22452000          <---------YAB1        --------->YAB1          --------->YAB1       <---------ATHB51        --------->AHL20(2)                             --------->ICU4 >MIR319A/B                  --------->TOE2(3)        --------->YAB1      --------->AHL20(2) >MIR319C--------->AHL20(2)<-------TEIL              <-------TEIL        <---------ATHB12 ------->MYB46(3)   --------->AHL20(2) --------->ATHB12                --------->WOX13(1)---------->DOF2   aacaactcaattataatcccaataacatatacattaaaaatcgattgagtcaaaattcataaatctgatatgtcaatgaaatgaatacgaacaaagctct  22452100                                 ---------->DOF2                        ----------------->AGL1                        ----------------->AG                        --------------->AGL15                                                       -                        <---------------AGL15                                                       <                       <-----------------AGL1                                                      <-                       ----------------->AG                                                      ----                       <-----------------AG--------->TOE1(3)                                     <---                       ----------------->AGL1                                                    ----                       <-----------------AGL2                                                   <----                       ----------------->AGL2                                                --------                    <---------GLK1(1)      --------->TOE2(3)         ----------->GT1         --------                    --------->ARR14(2)  --------->GLK1(1)         ------->TEIL               --------   caattgtacaattgaaaactcgaattcccaaatgggaaagagaaaccctaattttgaaatcaaaaatgaatttgtgaaattgagttcaaattcaaacgaa  22452200                                                                                         <---------GLK1(1)                                                                                         --------->GLK1(1)                                                                                     --------->ANAC58                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC55(2)                                                                              --------->ANAC58  -----                                                                              --------->ANAC46  <---- -------->HSFB2a(2)               ------>NtERF2                               --------->ANAC58  <---- ---------HSFB2a(2)         ----------->RAV1(2)                            <---------ARR14(2)  ------ --------LBD16             --------->MYB52(1)                      ------->TEIL      --------->ANAC58 ----->ARR14(2)            -------->P --------->O2            --------->CCA1(2)     <---------LBD16 ------ARR14(2)           ------->GAMYB                      <---------ARR14(2)    --------->MYB52(1) ----->GLK1(2)           <---------MYB46(2)                  --------->ARR14(2)   ----------->HVH21-- -----GLK1(1)            <---------MYB111(2)             <---------At4g35610  --------->O2  <-------- ->ANAC46                <---------MYB52(2)           ---------->DOF2      --------->ARR14(2) <------ ->ANAC58                <---------MYB111(1)      <---------DEAR3(1)      <------ZmHOX2a(1) <-------- ->ANAC58--------->YAB1  --------->MYB46(3)  --------->ARR14(2) <---------YAB1--------->ANAC55(1)  --   atctggaagaattatcaaattgatgcaactacctgaggccacgacgaaatcggcgatgaagcagatatgaatctcaggacacgcctcacggatttcttac  22452300  *TSS  <----------DOF2 ------>RAV1(2) -----ANAC58 -----ANAC58                                                              <---------WRKY18(1) -->P  <---------GLK1(1)                  <---------DOF5.7(2)            ----------->HVH21          - ---->MYB83                               --------->MYB52(1)     <---------At4g35610   <---------DAG2 -ANAC58                   <---------REM1(1)  ---------->DOF2    <------NtERF2         <----------DOF2 -----GT1                  <---------ANAC46<---------TOE1(3)   <---------WRKY12 <----------DOF2<----- -ANAC58                <-----------RAV1(1)<---------TOE2(3)   <---------WRKY38(1)  <-----------GT1 - ---->MYB46(1)   <---------MYB52(1)     --------->DOF5.7(2)  <-----------HVH21 <---------DAG2 <------   ctgcctttgatttctgtccgttttttgtgttgtagaggctaagttaacgaaagactctccatgggtcagcgagtcttgaccccttttgactttatcgctt  22452400      <---------ANAC46   <---------TGA2(1)   <---------bZIP60(2)   --------->bZIP60(1)                                                                  ------->TEIL   >>>>>>>>>>HY5                                                                  <-------TEIL   <---------bZIP60(1)                                                           <------ZmHOX2a(2)   <---------ANAC46                                                             <---------ARR14(2)   --------->O2                                                                 --------->ARR11(3)   --------->TGA2(1)                                                            <---------ARR11(3)   <---------O2                                                                 --------->ARR14(2)  ----------->STF1                                                              --------->AGP1 <---------TGA2(2)                                                             <---------GLK1(1) ---------->TGA1                                                               --------->GLK1(1) -----DOF2                             --------->TOE2(3)            ----------------->AGL3   <------- ---------->HVH21                    -------->P    <----------DOF2  <-----------------AGL3   -------- ---ANAC46                       --------->HSFB2a(2) ----------->GT1<-----------------AGL2<----------DOF2   atatgacgtcgtttagggaatgggattgttttcttcggcaacctctacttgggctttgttaatatgaaggcccatttttggagatccatggacttttgga  22452500                                                            <---------ARR11(3)                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                   --------->ANAC58                                                   ----------->GT1                                                   <---------ANAC55(2)        --------->LBD16                            --------->ANAC58      <---------LBD16                          <---------ANAC55(2)    --------->ARR14(2)                         --------->ANAC58    <---------ARR14(2)        <----------DOF2  --------->ANAC58   <---------TOE2(3)            ------    --------->GLK1(2)  <-----------GT1   <--------P--------->ANAC55(2)                    <---------YAB1 --HSFB2a(2)      --------->YAB1         <---------WOX13(1) --------->ARR11(3)    ----------------->AGL3 ->HSFB2a(2)     <---------YAB1       <---------YAB1      ----------->ARR10     --------->GLK1(2)   aaatagaatccggactattttgataataccagctttaattctggttgataagtaagtaataagatactgagattacaactagaatccatattttgatcaa  22452600                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                -----                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                          <-------GAMYB                                                      <---------ANAC58    <---------TOE2(3)   <------                                                      <---------ANAC58  ------>ZmHOX2a(2)--------->ALFIN1                                                      <---------ANAC46--------->ARR11(3) <-----------RAV1(1)                                           <---------YAB1       <---------ATHB12       <---------ANAC46                              <----------DOF2 ------->TEIL    --------->WOX13(1)       <---------ANAC58 --->WOX13(1)   ------>ZmHOX2a(1) <----------DOF2    ---------->ID1   --------->AGP1   <---------ANAC58   tctcttgagttgttcttcctccatgtctcagactttctttttgttatgaatttttggcgtttttcaatcactgatctaggttataacttgggtgttgcgt  22452700         --------->ICU4    <---------bZIP60(1)    --------->bZIP60(1)   <---------AtMYB61 --------ANAC46 -------AtMYB61 ------>ALFIN1 ---->ALFIN1                                        --------->YAB1 ---ANAC46                                 --------->GLK1(2) ---ANAC58                                --------->ARR11(3)            <-------TEIL ---ANAC58                                <---------ARR11(3)           --------->CCA1(2) -->ANAC55(2)                 --------->AtLEC2----------->GT1--------->HSFB2a(2) ---ANAC55(2)  <---------TOE1(3)        <---------TOE2(3)  --------->MYB52(1) ---ANAC55(1)  <---------TOE2(3)   <---------ARR14(2)  <---------AHL20(2)                   <--------   gtggtgaggtcatagttaagtttagtcttgtaatgcaaatttgagattttgtaatattaacttacagaatgagatacatagcaacttaatttttaagtta  22452800  Previous    Next  AGI:  At5g55310.1    Description:  TOP1alpha (TOPOISOMERASE I). similar to TOP1BETA (DNA TOPOISOMERASE 1 BETA), DNA topoisomerase type I [Arabidopsis thaliana] (TAIR:AT5G55300.1); similar to hypothetical protein OsI_026860 [Oryza sativa (indica cultivar-group)] (GB:EAZ05628.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23979.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47952.1); contains InterPro domain DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type; (InterPro:IPR013030); contains InterPro domain DNA topoisomerase I, C-terminal; (InterPro:IPR001631); contains InterPro domain DNA topoisomerase I, DNA binding, eukaryo Range:  from: 22447402    to: 22452302    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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