Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ICU4          --------->YAB1                                                 ---------->DOF2       --------->YAB1 --------->HSFB2a(2)<---------TOE1(2)              --------->LBD16  <---------ANAC58 --------->ETT(2)      <---------TOE2(2)             --------->ANAC46  <---------ANAC58 <---------ETT(2)  ----------->HVH21                 --------->LBD16  <---------REM1(1) ------>DOF2<---------YAB1          <-----------HVH21                 --------->HSFB2a(2) ->ANAC58<---------YAB1            --------->WOX13(1)                 <---------HSFB2a(2) ->ANAC58--------->ICU4            --------->ANAC46           <---------ZAT18      --------->TOE2(3)   aaaggcttgtcatcatcactgtctccagacccattatccatcacaggttttgaaactgtttcagtgcccattcccgaaagaacaacgttgatgaaggctc  22446300              --------->ANAC58                                  --------->ANAC58              --------->ANAC58                                  --------->ANAC58              --------->ANAC46  ---------->DOF2            --------->DAG2                        ----        ----------->HVH21    --------->TOE2(3)        --------->ANAC58                        -------   ------>MYB46(1)        --------->ANAC46            --------->ANAC58                        -------   ------>MYB83    --------->ANAC46     <-----------HVH21---------->DOF2                      -------   agaccaacttctgaccaagacacaaaacaaaccacaaagaaatgtcagagtttcccaaggaaaggcaaacaaacaccattacaagtttacaactacaagc  22446400                                                             <---------MYB52(2)              --------->ZAT14                              ---------->DOF2     -------->HAHB4                                   ---------->DOF2     --------->ATHB12                              --------->TOE1(3)     --------->YAB1                                --------->YAB1     <---------ICU4                              --------->ARR14(2)            --------->GLK1(2)    --------->ICU4                               <---------ARR14(2)            <---------ARR14(2)    <---------YAB1                               --------->GLK1(2)             --------->ARR14(2) ------->RAV1(1)                                 <---------ARR11(3) ------>MYB46(1) -->ANAC46    <---------ZAT14        --------->YAB1--------->TOE2(3)------>MYB83      <---------ZAT14 -->ANAC58  --------->ANAC46        <-------TEIL<---------GLK1(2)--------->MYB46(3)   <---------ZAT18 -->ANAC58--------->ZAT6<---------------AtSPL8  <---------ARR14(1) ----------->RAV1(1)--------->ZAT14   aacaaaatgattacactacagagaatgaagtactgagattcataaatagagaatcttaaagcaaagaaccaacatttgaagaatccagtgtagttgaaat  22446500                ------->TEIL             <---------ANAC58             --------->ANAC55(2)             <---------ANAC46                      -------->HAHB4          --------->AHL20(2)             <---------ANAC55(1)     <----------DOF2                       --------->YAB1             <---------ANAC55(2)     <---------------AGL15      --------->TOE2(3)             <---------ANAC58       <-----------------AGL3    <---------TOE1(3)      --------->LBD16               <-----------------AGL2    <---------TOE2(3)             <--------  --------->ARR14(2)     --------->TOE2(3)        --------->ICU4--------->TOE1(3)         -----------  <---------ARR14(2)     --------->TOE1(3)        <---------ATHB12        <<<<<<<<<ARR2 --------->CCA1(2)   atcaaatccccaattacgtatgtgaaaccctaatttgtgctataactgggtaatgatgcaaattaagcttaatacaatcaaatttcagagatttgacgtt  22446600                    <---------HSFB2a(2)                    --------->HSFB2a(2)        --------->At4g35610                                      <---------CCA1(2)        --------->HSFC1(2)                                   ------>ZmHOX2a(1)                   <--- -TOE2(3)  -------->P--------->LBD16                <---------CCA1(2)                 <---------At4g35610 >HVH21 <---------HSFC1(2)      --------->ARR11(3)<---------CCA1(2)     --------->ZAT14  <---------At4g35610   ggattgaagaagctaccttcttccagagattgaagaaattgtctagcgaagcctatctctctcctccgtctctctgttctctcttctcttctgcttcgat  22446700                     *TSS                     <------ZmHOX2a(1)                                                            <--                 <---------TOE2(1)                                                             <-----                 <---------TOE1(1)                                                          ---------              <----------ID1                                 --------->ZAT18                <--------             <---------TOE2(3)                               <---------ZAT14                ---------         <----------DOF2    <---------TOE2(3) <----------DOF2<---------ZAT18                <-------- ------MYB46(3)<------ZmHOX2a(1)     <------ZmHOX2a(1)       --------->ZAT14          <---------MYB52(1)   ggtttctatcgttttaaggacgaggagactaaggcataaggagactctctttagattagagagttcaccccttgagggttttgttttcgttacgacgtcg  22446800         >>>>>>>>>E2Fd         <------NtERF2                                   <---------At5g28300         >>>>>>>>>E2Fc                                  <-----------GT1        ------>NtERF2                               <---------YAB1 ----------CBF                           <---------AHL20(2) ----ANAC46                              <---------AHL20(1)                      <---------ARR14(2) >O2   --------->ANAC58      ------>NtERF2<---------AHL20(2)             <---------WOX13(1) -bZIP60(1)                 --------->ANAC46   <-----------GT1        <---------YAB1   <---------MYB52(1) >bZIP60(1)    ----------->GT1           --------->AHL20(2)--------->TOE2(3)     --------->ARR14(2) -O2   --------->ANAC58   <---------At5g28300<-----------GT1          <---------AHL20(2)   tattgagtcgcgccaaatcgtttaatcttaccgccatagacaatttttttcactcttattaccgtaaactttttaattgccaaaatccccttaatttttg  22446900                                              <---------------AGL15                  --------->AHL20(2)                                              --------------->AGL15      <---------AHL20(2)                                           <-----------GT1               --------->AHL20(1)                   --------->AHL20(2)     --------->AHL20(2)        --------->AHL20(2)    --------->YAB1                --------->ATHB12     <---------MYB52(1)           ----------->GT1----------->GT1           <---------AHL20(2)      <---------MYB46(3)           <---------AHL20(2)----------->GT1      ----------->GT1              ----------->GT1        --------->YAB1 --------->AHL20(2)        --   ggtttaagatgaaaaaattgattaaacattgactcatcggttaatttactaaattgtgaagcatatttaagtaaataaaataggggataaaatcagaaat  22447000                                                 <-----------GT1                                                 <---------DOF5.7(2)                                                <-----------GT1                                            --------->AHL20(2)                                            --------->AHL20(1)                                            <---------AHL20(2)                                 <-----                                           --------->AHL20(2)                             --------->ANAC55(2)                                           <---------ATHB51                   --------->YAB1   ------                                    --------->YAB1                    <---------RVE1(1)   <---------ANAC58            <---------AHL20(2)    ------->TEIL <---------AHL20(2)     <---------CCA1(1)   <---------ANAC46            --------->AHL20(2) <---------ANAC55(2)<---------TOE2(3)  --------->ARR11(3)   <---------ANAC55(2)    --------->GLK1(1)          --------->ANAC55(2)<---------TOE1(3)  <---------GLK1(2)    <---------ANAC58    <---------GLK1(1)    <---------AHL20(2)<---------ATHB12          <---------ARR11(3)   <---------ANAC55(1) -------->DOF2          --------->AHL20(2) <---------AHL20(2)      <---------TOE2(3)    <-----------GT1   aaaaagaaatccaattttttatccgataaaattatgtatcatcaaataatttaacgtttggatgctcttaagattttttatcagaaaaatttacgtgtcg  22447100                                                      ----------->GT1                                                ------->TEIL                                             --------->ANAC55(2)                                             <---------ANAC46                                             <---------ANAC55(1)                        --------->ANAC58                                             <---------ANAC58                           --------->ANAC46                             <---------YAB1  <---------ANAC58                       --------->CCA1(2)                   <---------ARR14(2)        <---------ANAC55(2)                    <---------GLK1(1)                   --------->ARR14(2)  <---------AHL20(2)                          --------->ARR11(3)       <-----------GT1   <---------GLK1(2) <-----------GT1    <-----------GT1      <---------ARR11(3) ----ETT(2)       --------->GLK1(1)   --------->AHL20(2)  <xxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58 --->ETT(2)       <---------GLK1(1)----------->GT1 --------->MYB52(1)             <<<<<<<<<RAP2.2   atagataatttagcatttggatatccacattcttatgggataaaattacgtatcaacggataatttagcatttagatactatttagatatacgaaacaat  22447200  Previous    Next  AGI:  At5g55300.1    Description:  TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I. Identical to DNA topoisomerase 1 (TOP1) [Arabidopsis Thaliana] (GB:P30181); similar to TOP1alpha (TOPOISOMERASE I) [Arabidopsis thaliana] (TAIR:AT5G55310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23979.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47952.1); similar to DNA topoisomerase I [Daucus carota] (GB:CAB46363.1); contains InterPro domain DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type; (InterPro:IPR013030); contains InterPro domain DNA topoisomerase I, C-terminal; (InterPro:IPR001631); contains InterPro domain Range:  from: 22441803    to: 22446721    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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