Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ANAC46                 ---------->DOF2               <---------AHL20(2)      <-----------GT1               --------->YAB1          <---------ICU4               --------->AHL20(2)      --------->ZAT6              <---------ATHB12      <---------ICU4            --------->WOX13(1)      --------->YAB1          -------->P        --------->ANAC46           --------->ICU4      --------->ANAC58        --------->ANAC58--------->ANAC58               --------->ANAC58        --------->ANAC58--------->ANAC58     --------->TOE2(3)                   --------->MYB52(1)   cttcaaatttaagccaattaaaagtcacgcttacacaataatcactacctcatagacaagctaaccagaatagaaattgggaataacgcagacaaactca  22401800                                              --------->YAB1                                            --------->ANAC58                                        --------->YAB1                                       <---------ATHB12                                     <---------ICU4                                    ------>ZmHOX2a(1)                                <---------ARR11(3)                                --------->ARR11(3)     <-----------GT1                  --------->YAB1--------->ARR14(2)   --------->DOF5.7(2)                 <---------ATHB12 ------>ZmHOX2a(2) <----------DOF2               --------->WOX13(1)<------ZmHOX2a(2)  --------->TOE2(3)            --------->ANAC58---------->DOF2 --------->ANAC58        ------->TEIL    --------->ANAC58            --------->ANAC58--------->YAB1  --------->ANAC46   --------->MYB52(1)   --------->ANAC58  <XXXXXXXXXXXXXXXXXXXXMIR869.1 <---------ARR14(2)  --------->TOE1(3) ----------->GT1   aaaccctagaattgaagcaatcagaagctataaagatcctaatcacactcaaaactttaaccagacaacgaatcgttacacaatgcaagaaatagaagtc  22401900                                                                                             --------                                   <----------DOF2                                           <-------                                <---------WRKY18(1)                                    <---------At4g35610                                >>>>>>>>>WRKY18    <---------ZAT2                --------->LBD16                               --------->WRKY12    --------->At4g35610          <---------HSFB2a(2) <                         <-----------HVH21         <---------At4g35610  ---------->ID1 --------->At4g35610                      ----------->RAV1(2) <---------WOX13(1)--------->WRKY18(1) --------->HSFB2a(2) <                     --------->GLK1(2) <---------TOE2(3)   <-----------HVH21   <---------LBD16   <---   gagagagtgagtgagaaatagaaaacctgtcccttgactttgagattgatgtgagctccttggtcaggcttcttgtcttcttccggagtagcagacatct  22402000                                                                                           --------->ARR14(2)                                                                                 --------->LBD16                                                                                 <---------TOE1(2)                                                                                <---------LBD16                                                                               <---------LBD16                                                                             <-------TEIL  --------->ARR11(3)        --------->YAB1    <-------GAMYB                                     --------->ARR14(1)     --------->YAB1      <---------MYB46(3)          --------->CCA1(2)      --------->GLK1(2)    <---------YAB1     <---------------------WRI1<---------------------WRI1 --------->CCA1(2) ->ARR11(3)            <------NtERF2           ------>ZmHOX2a(2)           --------->ARR11(1) --ARR11(3)<---------GLK1(2) ----------->GT1 <---------ARR14(2)            <---------GLK1(2) ---------DAG2       <---------DEAR3(1)      --------->ARR14(2)            --------->ARR14(2) ----------DOF2     <---------ORA47(1)<---------ARR11(3)                   <---------ARR14(2) --------GT1       <-----------HVH21  --------->ARR11(3)                 ----------->ARR10 <---------ARR14(2)   tactttattatcagattatacggtcggcgattggaaacaagaacttcgatctgcgatataagcgaagccctaagagagattcgcgggattgcagaacttg  22402100                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                    ---------->DOF2                  --------->ARR14(2)      --------                                 --------->AHL20(2)      <---------AtMYB61                   <-------                           <------NtERF2             <---------YAB1  <---------ARR14(2)   --------->YAB1                        <---------At4g35610         <---------ARR11(3)             --------->MYB52(1)                        --------->At4g35610        *TSS--------------------->WRI1 ----------->HVH21                        <------NtERF2          --------->MYB46(3)    <---------GLK1(2)   <-------TEIL   agggtttgagggagagagagagactcggcagagaataaaaaagactgaaaccactatctttggtcgcatcggattcttgtttatctaacggttcataatc  22402200        <---------YAB1   ------>ZmHOX2a(2) ---------CBF -----ICU4          <---------MYB46(3)                              <---------YAB1 ---->YAB1         <---------DEAR3(1)                              --------->TOE2(3) --->ATHB1        <---------At4g35610                              --------->YAB1 ---->ATHB12      --------->At4g35610                  <---------ANAC58 ----ATHB12      ------>NtERF2                         <---------ANAC58 --->ICU4       <---------DEAR3(1)                     <---------ANAC46                 <------MYB46(1) ----YAB1    ----------->HVH21            --------->TOE2(3) <-----------GT1             ----------->GT1 ->YAB1<---------ARR11(3)      <---------KAN4(2)    <---------bZIP60(1)                 <------MYB83 --ICU4<<<<<<<<<<GT-1       ----------->GT1         --------->bZIP60(1)                 <---------MYB46(3)   attgatctatatcattcgacggctgtgagtgagtataatctctaacttaaaatgatgtcgttttagcattcttaatgggctcaaatgggctggttacttc  22402300                                            ----------->ARR10                                        <---------HSFB2a(2)                                        --------->HSFB2a(2)                                  --------->At4g35610                                  --------->ZAT2                                  <---------At4g35610                                    <---------MYB52(1)                                  <---------ZAT2                                     ------->TEIL                            <-----------ARR10                                      --------->ZAT14                            <---------ARR11(3)                                     <---------ZAT14                            --------->GLK1(2)                           <---------ARR11(3)                            --------->ARR11(3)<---------ARR14(2)        --------->ARR11(3)                 <---------AHL20(2)    <---------ANAC46         --------->DAG2     --------->ZAT18     --------->ANAC46----------->GT1<----------DOF2            ---------->DOF2---------->DOF2    <---   tgtgtctacccaagaattttaaaatgtgaaaatctcagctttcgagtagatttgtttgagttgggaaaagtgaagatgttcaaagtgaaccgtttgattt  22402400                                                      <---------YAB1                                                 <----------DOF2                                            ----------->HVH21              <---------ARR11(3)          <---------ANAC46                                          <              --------->ARR11(3)          <---------ANAC58                                          <          ---------->DOF2                 <---------ANAC58                                 ---------- ------YAB1 --------->ICU4           <-----------RAV1(1)                     <---------TOE2(3)     <-   tgatcaaaccagtaaagatttcaattgtttaatatggttttgttgtgtgaccttttacaattagccaacttgagttttagaggttttgatgagttgttta  22402500                                                                            <------ZmHOX2a(2)                                                     --------------->AGL15 --------->ARR14(2)                                           --------->ARR14(2)    <---------ICU4                                           <---------ARR14(2)   --------->ICU4                                         --------->LBD16        <---------YAB1        --------->YAB1                                        --------->ANAC55(2)   --------->YAB1--------->CCA1(2)                                        --------->ANAC46     <---------YAB1--------->ARR11(3)     ----------->GT1                 --------->GLK1(2)      --------->ARR11(3)   <---------ATHB12   <-------GAMYB                     <---------ARR14(2)  --------->AHL20(2)--------->AGP1 ---------At5g28300         <---------GLK1(2)    --------->ARR14(2)        <---------ARR14(2) ---------LBD16   <---------------AtSPL8<---------ANAC55(2) <---------ARR11(3) --------->WOX13(1) ->GT1           ---------->DOF2     --------->ARR14(2)  --------->YAB1    <---------ARR11(3) ----------GT1<-----------GT1--------->GLK1(2)   <---------ARR14(2)  --------->YAB1  <---------ATHB12   ttcacggttgtaaaattaacaaagtacaaagattctaaaaatccgtaaccagataccattaatatcataattcataagatccaatcactcatgagtcatt  22402600                  --------->ICU4              ------>MYB83              ------>MYB46(1)             --------->ORA47(1)            ------->GAMYB            --------->DEAR3(1)            <---------ANAC58                                  ---------           <------------AtMYB77           <---------AtLEC2                       <---------ICU4           --------->DEAR3(2)             <---------ANAC46                      <---------ATHB51           --------->MYB46(3)     --------->AHL20(2)                            --------->AHL20(2)  -         --------->MYB52(1)     --------->ANAC58                         --------->ANAC58  <---------AHL20(2)     --------->ANAC58           --------->ANAC55(2)                      --------->ANAC58  --------->AHL20(2)     --------->ANAC46           --------->ANAC58        <---------------------WRI1     ==============     --------->ANAC58  <---------AHL20(2) <---------ANAC58           --------->ANAC58  ------>ZmHOX2a(1)   --------->ANAC46--------->ATHB12     <---------YAB1----------->GT1--------->ANAC58  <------------- --------->ANAC46 <---------YAB1--------->ANAC46 ---------->DOF2   ---------->DOF2    <---------MYB59   tacacacacgataaccgaccatgatttaaacttcaagtaattttgcttgaagaaagtagtcaaatatcacaaagccagccaaattattcctaattaaagc  22402700  Previous    Next  AGI:  At5g55160.1    Description:  SUM2 (SMALL UBIQUITIN-LIKE MODIFIER 2). similar to SUM1 (SMALL UBIQUITIN-LIKE MODIFIER 1) [Arabidopsis thaliana] (TAIR:AT4G26840.1); similar to ubiquitin-like protein SMT3 [Phaseolus vulgaris] (GB:AAM21576.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 22400786    to: 22402151    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g55170.1    Description:  SUM3 (SMALL UBIQUITIN-LIKE MODIFIER 3). similar to SUM2 (SMALL UBIQUITIN-LIKE MODIFIER 2) [Arabidopsis thaliana] (TAIR:AT5G55160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71030.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 22402533    to: 22403340    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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